10/14/2022

1.  Wu, Q., da Silva Ferreira, M. V., & Kamruzzaman, M. (2026). Fully portable smartphone-integrated device coupled with nanozyme-based assay for sensitive detection of TBHQ in edible oils. Food Chemistry, 518, Article 149610. https://doi.org/10.1016/j.foodchem.2026.149610


2. Hu, Y., Kamruzzaman, M. (2026). Nanozyme-Based Biosensing Strategies for Aflatoxin Detection: Recent Advances and Perspectives. Food Chemistry (Just accepted).


3. McLamore, E., Vanegas, D. (2026). Zoospore microfluidic chemotaxis assay. protocols.io https://dx.doi.org/10.17504/protocols.io.5jyl84297g2w/v1


4. Clark, G., Vanegas, D., Cannon, A., Jankovik, M., Huang, R., Brown, K. A., … J. Roux, S. (2025). Levels of extracellular ATP in growth zones of Arabidopsis primary roots are changed by altered expression of apyrase enzymes. Plant Signaling & Behavior, 20(1). https://doi.org/10.1080/15592324.2025.2555965


5. Moreira,G., Shaw, A.B., Amin, N., Gao, W., Sahoo, D., McLamore, E.S. (2026). A dip-and-read capacitive electrochemical sensor for orthophosphate monitoring. Sustain. Sci. Technol. 3 014004. https://doi.org/10.1088/2977-3504/ae3d3b


6. Gustafson, B.; Kosari, N.; Brothersen, E.; Mosher, M.; Zhou, A. Probe Cytotoxic and Oxidative Stress Effects of Nanoplastics on Caco-2 Cells: Insights from Raman Spectroscopy and Machine Learning. Sensors, 2026, 26, 5375. https://doi.org/10.3390/s26175375


7. Kousheh, S., Mustapha, A., Lin, M. 2026. In situ synthesis of gold-core silver-shell nanoparticles on bacterial cellulose for SERS detection of micro- and nanoplastic particles in vegetables. Analyst, 151, 1357-1370. https://doi.org/10.1039/d5an01043h


8. Hegde, A., Hajikhani, M., Snyder, J., Cheng, J., Lin, M. 2025. Leveraging SERS and transformer models for simultaneous detection of multiple pesticides in fresh produce. ACS Appl. Mater. Interfaces. 17, 2018-2031. https://doi.org/10.1021/acsami.4c17777


9. Kousheh, S., Lin, M. 2025. Recent advancements in SERS-based detection of micro- and nanoplastics in food and beverages: techniques, instruments, and machine learning integration. Trends Food Sci. Technol. 159, 104940. https://doi.org/10.1016/j.tifs.2025.104940


10. Morales-Muralles, M., Serrano, S. J., Makhatadze, G., & Reyes-De-Corcuera, J. I (2026). Effect of high hydrostatic pressure on D-amino acid oxidase activity and stability. J. Biol. Eng. 20, 40. https://doi.org/10.1186/s13036-025-00604-x


11. Liang W, Ma X, Wang Y, Zhang W and Yu C. 2026. Biochar modulates microbial carbon metabolism to mitigate global warming potential during composting, Environmental Pollution, 407, 128768. https://doi.org/10.1016/j.envpol.2026.128768


12. Ouyang Y, Ma X, Yang J, Tong T, Liang W, Wang Y, Zhang W and Yu C. 2026. Changes in antibiotic resistance gens and metal resistance genes of sheep manure through biochar assisted composting, Journal of Environmental Chemical Engineering, 14(5), 123729. https://doi.org/10.1016/j.jece.2026.123729


13. Fan X, Wang Y, Liang W, Ma X, Zhang W and Yu C. 2026. Organic fertilizers reduce N2O and NH3 emissions by regulation soil nitrogen pool and microbiome, Journal of Environmental Management, 404, 129432, https://doi.org/10.1016/j.jenvman.2026.129432


14. Wang, Y, Fan, X, Liang W, Ma X, Zhang W, Yu C. 2026. Biochar mitigates N2O and NH3 emissions in sheep manure composting by regulating microbial genes associated with nitrogen cycle, Environmental Technology & Innovation, 41, 104828. https://doi.org/10.1016/j.eti.2026.104828


15. Tong, T, Yang, J, Zhu B, Frese AJ, Greenlee MHW, Greenlee JJ, Yu C. 2026. Machine learning-assisted characterization of cervid skin tissues with chronic wasting disease by nano-enabled Raman spectroscopic biosensing, Nanoscale Advances, 8(2), 512-523.https://doi.org/10.1039/D5NA00252D


16. Gustavo L Miliao, Francesco G Winandar, Ethan H Leung, Cicero C Pola, Jonathan C Claussen, Carmen L Gomes. 2026. Ion sensing in agricultural and food applications: a critical review of solid-contact ion-selective sensors, Analytical and Bioanalytical Chemistry 418 (7), 1891-1911


17. Sommer Osman, Sanduni U. Devasinghe, E. Strait, Madison, C. Pola, Cicero, Delphine Dean, C. L. Gomes, Robbyn K. Anand. 2026. Label-free, non-optical detection of intact SARS-CoV-2 virions in native human saliva via microscale surface ion conduction, Biosensors and Bioelectronics, 304, 118643


18. Gustavo L. Milião; Janan Hui; Raquel R A Soares; Haoyang You; Kayla Vittore; Cicero C. Pola; Ethan H. Leung; DoKyoung Lee; Stuart J. Rowan; Carmen L. Gomes; Mark C. Hersam ; Jonathan C. Claussen. 2026. Screen-Printed Biochar-Derived Graphene Solid-Contact Ion-Selective Electrodes for Nutrient Monitoring in Hydroponic Solutions, ACS Appl. Mater. Interfaces, 18 (29): 39865–39878


19. Nathan M Jared, Griffin Ellis, Mahmoud Gshash, Ethan H Leung, Gustavo L Milião, Michelle Soupir, Nathan M Neihart, Jonathan C Claussen. 2026. Lab-on-a-Drone: Real-Time Electrochemical Sensing of Nitrate in Agricultural Watersheds, ACS sensors 11 (1), 136-147


20. Eric A Riddell, Rachel M Sorensen, Elizabeth McNeill, Boris Jovanović. 2025. Metabolic effects of dietary exposure to polystyrene microplastic and nanoplastic in fruit flies, Journal of Experimental Biology, 228,19, jeb250522. https://doi.org/10.1242/jeb.250522


21. H Dey, N Alimoradi, A Farshad, P Shrotriya, M Nilsen-Hamilton. 2026. Abstract 2042 DNA aptamers recognizing cysteine protease 1 from maize roots for early plant stress biomarker detection, Journal of Biological Chemistry 302 (5)


22. Aishat Abubakar, Samuel Shobade, Nima Alimoradi, Ali Farshad, Holly Loper, Pranav Shrotriya, Larry Halverson, Marit Nilsen-Hamilton. 2026. Abstract 3625 DNA aptamers for early detection of plant and bacterial-derived rhizosphere-associated chitinases using an aptasensor, Journal of Biological Chemistry 302 (5)


23. Michelle Thayer, Marit Nilsen-Hamilton. 2026. Reduced PAI-1 Activity Promotes Longevity and Stress Resilience: Insights from a Drosophila Spn42Dd Model, AMERICAN JOURNAL OF PATHOLOGY 196 (5)


24. S Anisuzzaman, M Nilsen-Hamilton. 2026. Metastable multimeric G-quadruplex 2′ FY-RNA aptamers that selectively bind pyoverdines, Sci Rep. https://doi.org/10.1038/s41598-026-60460-7


25. Tang,, Choi, S.-J., Thomas, C., Miller, A. M., Dresbach-Hill, G. R., Khanthaphixay, B., Reynolds, K. A., Yoon, J.-Y. (2026). Dip and Taste PFAS to Detect and Classify from Environmental Water Samples. Journal of Hazardous Materials, 503: 141051.https://doi.org/10.1016/j.jhazmat.2026.141051


26. Reynolds,, Sosnowski, K., Carlson, C., McGuire, T. D., Roman, W., Yoon, J.-Y. (2026). Smartphone-Based Multispectral Autofluorescence Analysis of Bacteria Mixtures of Staphylococci Using Convolutional Neural Network. Journal of Biological Engineering, 20: 15.https://doi.org/10.1186/s13036-025-00616-7


27. Mathews, K., Eby, A. J., Reynolds, J., Wong, R. K., Yoon, J.-Y. (2026). Rapid Antithrombin Assay from Human Blood Plasma Utilizing Smartphone-Based Flow Observation on Paper Chips. PLOS Digital Health, 5(2): e0001209. https://doi.org/10.1371/journal.pdig.0001209


28. Williams M, Faraj R, Nyarku R, Simon S, Bentum KE, Ghazy A, Woube Y, Samuel T, Alocilja E, Abebe W3. 2025. Potential use of Biosensors for the rapid and specific isolation of Listeria monocytogenes from Ready-to-eat (RTE) foods, Pathogens 2025, 14(12), 1280; https://doi.org/10.3390/pathogens14121280


29. Boodoo C1 and Alocilja EC3. 2025. Proof-of-Concept Nanoparticle-Based Biosensor for Detecting the African Swine Fever Virus Across Multiple Genotypes Using In Silico and In Vitro Approaches, ACS Omega 2025, 10, 51028−51038, https://doi/10.1021/acsomega.5c05375


30. Boodoo C1 and Alocilja EC3. 2025. Biosensor Strategies for Rapid African Swine Fever Virus Detection, ACS Omega 2025, 10 (36), 40716-40725, https://doi.org/10.1021/acsomega.5c03168


31. Al Hafi L1 and Alocilja EC3. 2025. Morphometric Characterization of Bacteria Associated with Bacteremia, Encyclopedia, 2025, 5(3), 130; https://doi.org/10.3390/encyclopedia5030130


32. Kao K1 and Alocilja EC3. 2025. Integrated Sample to Detection of Carbapenem-Resistant Bacteria Extracted from Water Samples using a Portable Gold Nanoparticle-based Biosensor, Sensors, 2025, 25, 5293, https://doi.org/10.3390/s25175293


33. Kao K1 and Alocilja EC3. 2025. A Review of the Diagnostic Approaches for the Detection of Antimicrobial Resistance, including the Role of Biosensors in Detecting Carbapenem Resistance Genes, Genes 2025, 16(7), 794; https://doi.org/10.3390/genes16070794


34. Zapater JE, Elegado FB, Suministrado MKC, Merca FE, Aguila MJB, Fernando-Corpuz LM, and Alocilja EC. 2025. Hyperinvasive locus A gene-based electrochemical nanobiosensor for rapid detection of Salmonella enterica in chicken eggshell matrices, Food Research, 9(3):303-311 (June 2025), DOI: https://doi.org/10.26656/fr.2017.9(3).368


35. Al Hafi L1, Franco AJ1, Kao K1, Alocilja EC3. 2025. Field Guide: Morphometric Visualization and Characterization of Selected Foodborne Pathogens Using Advanced Imaging Techniques, Encyclopedia 2025, 5(2), 47; https://doi.org/10.3390/encyclopedia5020047


36. Mayaka R1 and Alocilja EC3. 2025. Genomic nano-biosensor for rapid detection of carbapenem-resistant gene blaNDM-1 in carbapenemase-producing bacteria, Nanoscale Advances, DOI: 10.1039/D4NA00798K, https://pubs.rsc.org/en/content/articlepdf/2025/NA/D4NA00798K?page=search


37. Kao K1 and Alocilja EC3. 2025. Parallel Detection of the Unamplified Carbapenem Resistance Genes blaNDM-1 and blaOXA-1 Using a Plasmonic Nano-Biosensor with a Field-Portable DNA Extraction Method, Biosensors 2025, 15, 112. https://doi.org/10.3390/bios15020112 Paper was selected as the edition cover.


38. Franco JA1 and Alocilja EC3. 2025. Adsorption studies of Salmonella Enteritidis and Escherichia coli on chitosan-coated magnetic nanoparticles, Cells 2025, 14, 225. https://doi.org/10.3390/cells14030225


39. Sharief S1, Caliskan-Aydogan O1, Alocilja EC3. 2025. Magnetic extraction for rapid assessment of low-level E. coli and Salmonella contamination in complex food matrices, Food Quality and Safety, Vol. 9, 2025, fyaf007, https://doi.org/10.1093/fqsafe/fyaf007


40. Flores MS, Alocilja EC, Amalin DM, Aguila MJB, Purificacion MV, Merca FE, Manuel MCC, Dimamay MPS, Bautista MAB, Fernando LM. 2025. DNA-based Nanobiosensor for the Colorimetric Detection of Dengue Virus Serotype 2 Synthetic Target Oligonucleotide, Biosensors, 2025, 15(2), 71; https://doi.org/10.3390/bios15020071


41. Sharma B., H. Kohay, S. Sharma, M. Youngblood, J. Cochran, J. Unrine, O. Tsyusko, G. Lowry, J. P. Giraldo. 2025. Controlled Nitrogen Release by Hydroxyapatite Nanomaterials in Leaves Enhances Plant Growth and Nitrogen Uptake, ACS Nano. 19, 3, 3906–3919. https://doi.org/10.1021/acsnano.4c16362


42. Azme A., I. Escobar, O. Tsyusko and N. Aich. 2025.Effects of two wet exfoliation strategies on the yield and colloidal behavior of 2D hexagonal boron nitride nanosheets, Nano Express 6. 015011. https://doi.org/10.1088/2632-959X/adad05


43. Yousaf, M.U.; Madeo Cortarelli, L.; Jebet, N.I.; Unrine, J.M.; Aich, N.; Tsyusko, O.V.; Escobar, I.C. Characterization, Performance, and Toxicological Assessment of Polysulfone-Sulfonated Polyether Ether Ketone Membranes for Water Separation Applications, Membranes 15, 87. https://doi.org/10.3390/membranes15030087

 

10/05/2023

1. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Rapid Isolation of Low-level Carbapenem-Resistant E. coli from Water and Foods Using Glycan-Coated Magnetic Nanoparticles, Biosensors 2023, 13(10), 902; https://doi.org/10.3390/bios13100902


2. Caliskan-Aydogan O1 and Alocilja EC3. 2023. A Review of Carbapenem Resistance in Enterobacterales and Its Detection Techniques. Microorganisms, 2023, 11(6), 1491; https://doi.org/10.3390/microorganisms11061491


3. Sharief, S. A., Caliskan-Aydogan, O., & Alocilja, E. C. 2023. Carbohydrate-coated nanoparticles for PCR-less genomic detection of Salmonella from fresh produce. Food Control, 150 (2023) 109770


4. Boodoo C1, Dester E1, David J1, Patel V1, Rabin KC, and Alocilja EC3. 2023. Multi-Probe Nano-Genomic Biosensor to Detect S. aureus from Magnetically-Extracted Food Samples, Biosensors, accepted, in press. Biosensors 2023, 13(6), 608


5. Sharief S1, Caliskan-Aydogan O1, Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for PCR-less genomic detection of Salmonella from fresh produce, Food Control, Vol. 150, 109770.


6. Boodoo C1, Dester E1, Sharief S1, and Alocilja EC3. 2023. Influence of Biological and Environmental Factors in the Extraction and Concentration of Foodborne Pathogens using Glycan-Coated Magnetic Nanoparticles,  Journal of Food Protection, 86(4):100066.


7. Sharief SA1, Caliskan-Aydogan O1, and Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for point-of-use food contamination testing, Biosensors and Bioelectronics: X, 13 (2023), 100322, 9 pp.


8. Bhattarai RK1,3, Basnet HB, Dhakal IP, Alocilja E. 2023. Virulence genes of avian pathogenic Escherichia coli isolated from commercial chicken in Nepal, Comparative Immunology, Microbiology and Infectious Diseases, 95 (2023) 101961,


9. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Nanoparticle-Based Plasmonic Biosensor for the Unamplified Genomic Detection of Carbapenem-Resistant Bacteria, Diagnostics, Diagnostics 2023, 13(4), 656


10. Yuanzhi Bian, Debra L. Walter, Chenming Zhang. Efficiency of interferon-γ in activating dendritic cells and its potential synergy with toll-like receptor agonists. Viruses (MDPI). 2023, 15, 1198.doi.org/10.3390/v15051198.


11. Hajikhani, M., Zhang, Y., Gao, X., Lin, M. 2023. Advances in CRISPR-based SERS detection of food contaminants: A review. Trends Food Sci. Technol. 138, 615-627.


12. Wang, W., Yu, Z., Lin, M., Mustapha, A. 2023. Toxicity of silver nanoparticle incorporated-bacterial nanocellulose to human cells and intestinal bacteria. Int. J. Biol. Macromol. 241, 124705.


13. Weng, Z., You, Z., Li, H., Wu, G., Song, Y., Sun, H., Fradlin, A., Neal-Harris, C., Lin, M., Gao, X., Zhang, Y. 2023. CRISPR-Cas12a biosensor array for ultrasensitive detection of unamplified DNA with single-nucleotide polymorphic discrimination. ACS Sensors. 8(4), 1489-1499.


14. Asgari, S., Dhital, R., Mustapha, A., Lin, M. 2022. Duplex detection of foodborne pathogens using a SERS optofluidic sensor coupled with immunoassay. Int. J. Food Microbiol. 383, 109947.


15. Hajikhani, M., Lin, M. 2022. A review on designing nanofibers with high porous and rough surface via electrospinning technology for rapid detection of food quality and safety attributes. Trends Food Sci. Technol. 128, 118-128.


16. Asgari, S., Dhital, R., Ali Aghvami, S., Mustapha, A., Zhang, Y., Lin, M. 2022. Separation and detection of E. coli O157:H7 using a SERS-based microfluidic immunosensor. Microchimica Acta. 189, 111.


17. Diehl, M., Kang, M.J., Reyes-De-Corcuera, J.I.* (2023) Effect of high-pressure technologies on enzymes used in nonfood processing applications in Effect of High-Pressure Technologies on Enzymes, Leite Júnior, B. and Tribst, A., Editors. Academic Press, 405-424.


18. Tong T,* Qi Y, Bussiere L, Dhar D, Miller C, Yu C, Wang Q, Rational Design of Oral Vaccines by Gut Organoid Mucosal Models, Bioactive Materials, 2023, 30, 116-128, https://doi.org/10.1016/j.bioactmat.2023.07.014


19. Zhao M, Cao X, Wu Y, Zou S, Li Z, Lin X, Ji C, Dong L, Zhang S, Yu C, Liang H, Effects of prebiotics on the fermentation of traditional suancai of Northeast China, Food Science and Human Wellness, 2023, https://doi.org/10.26599/FSHW.2022.9250114


20. Zhou Y, Zheng J, Zhao J, Li S, Xing J, Ai C, Yu C, Yang S, Yang J, Oxygenated storage alleviates autolysis of the sea cucumber Apostichopus japonicus during transport. Aquaculture International, 2023. https://doi.org/10.1007/s10499-023-01108-5


21. Zhang W, Yu C, Yin S, Chang K, Chen K, Xing Y, Yang Y, Transmission and retention of antibiotic resistance genes (ARGs) in chicken and sheep manure composting, Bioresource Technology, 382, 129190, 2023. https://doi.org/10.1016/j.biortech.2023.129190


22. Wang Z, Yu X*, Zhao W, Wang Y, Li S, Yu C, Dong X, 3D printability of sturgeon paste as affected by colloid milling. Journal of Food Engineering, 346, 111429, 2023, https://doi.org/10.1016/j.jfoodeng.2023.111429


23. Chen KS, Yu C, Cai L, Zhang W, Xing Y, Yang Y, Bacterial community succession in aerobic-anaerobic-coupled and aerobic composting with mown hay affected C and N losses, Environmental Science and Pollution Research, 2023, https://doi.org/10.1007/s11356-023-27572-3


24. He Q*, Tong TJ*, Yu C and Wang Q, Advances in Algin and Alginate-Hybrid Materials for Drug Delivery and Tissue Engineering, Marine Drugs, 21(1), 14, 2023, https://doi.org/10.3390/md21010014


25. Leng L, Zou H, Wang Y, Yu C, Qi H, Seaweed Slurry Improved Gel Properties and Enhanced Protein Structure of Silver Carp (Hypophthalmichthys molitrix) Surimi, Foods, 11(19), 3115, 2022, https://doi.org/10.3390/foods11193115


26. Liu Y*, Wang Z, Huang Y, Konno K, Tong T*, Yu C, Zhu B, Dong X, Characteristic stable structure of the myosin rod in dark muscle of yellowtail kingfish (Seriola aureovittata), International Journal of Food Science and Technology, 2022, https://doi.org/10.1111/ijfs.16146

 

10/21/2024

1. Yan Liang, Bradley Khanthaphixay, Jocelyn Reynolds, Preston J. Leigh, Melissa L. Lim, and Jeong-Yeol Yoon, "A Smartphone-Based Approach for Comprehensive Soil Microbiome Profiling," Applied Physics Reviews, 2024, 11(3): 031412.


2. Jeong-Yeol Yoon and Chenxu Yu, Editors, "Machine Learning and Artificial Intelligence in Chemical and Biological Sensing," Elsevier: Amsterdam/London/Cambridge, 2024, ISBN: 978-0-443-22001-2 (paperback), 978-0-443-22000-5 (eBook).


3. Jeong-Yeol Yoon, "Chapter 10 - ML-Assisted Biosensors Utilizing a Set of Biological Polymers," in Machine Learning and Artificial Intelligence in Chemical and Biological Sensing, Editors: Jeong-Yeol Yoon and Chenxu Yu, Elsevier: Amsterdam/London/Cambridge, 2024, pp.259-274.


4. Chenxu Yu and Jeong-Yeol Yoon, "Chapter 4 - ML-Assisted E-Nose and Gas Sensors," in Machine Learning and Artificial Intelligence in Chemical and Biological Sensing, Editors: Jeong-Yeol Yoon and Chenxu Yu, Elsevier: Amsterdam/London/Cambridge, 2024, pp.83-112.


5. Jeong-Yeol Yoon, "Chapter 3 - Use of ML/AI in Chemical Sensors and Biosensors," in Machine Learning and Artificial Intelligence in Chemical and Biological Sensing, Editors: Jeong-Yeol Yoon and Chenxu Yu, Elsevier: Amsterdam/London/Cambridge, 2024, pp.71-81.


6. Yan Liang and Jeong-Yeol Yoon, "Chapter 2 - Fundamentals of Machine Learning," in Machine Learning and Artificial Intelligence in Chemical and Biological Sensing, Editors: Jeong-Yeol Yoon and Chenxu Yu, Elsevier: Amsterdam/London/Cambridge, 2024, pp.23-70.


7. Yan Liang and Jeong-Yeol Yoon, "Sensors for Blood Brain Barrier on a Chip," Vitamins and Hormones, 2024, 126, 219-240.


8. Bailey C. Buchanan, Yisha Tang, Hannah A. Lopez, Nancy G. Casanova, Joe G.N. Garcia, and Jeong-Yeol Yoon, "Development of a Cloud-Based Flow Rate Tool for eNAMPT Biomarker Detection," PNAS Nexus, 2024, 3(5): pgae173.


9. Chloe Thomas, Togzhan Spatayeva, Dawon Yu, Andrew Loh, Un Hyuk Yim, and Jeong-Yeol Yoon, "A Comparison of Current Analytical Methods for Detecting Particulate Matter and Micro/Nanoplastics," Applied Physics Reviews, 2024, 11(1): 011313.


10. Sinyang Kim, Katelyn Sosnowski, Dong Soo Hwang, and Jeong-Yeol Yoon, "Smartphone-Based Microalgae Monitoring Platform Using Machine Learning," ACS ES&T Engineering, 2024, 4(1): 186-195.


11. Tyler Hertenstein, Yisha Tang, Alexander S. Day, Jocelyn Reynolds, Patrick V. Viboolmate, and Jeong-Yeol Yoon, "Rapid and Sensitive Detection of miRNA Via Light Scatter-Aided Emulsion-Based Isothermal Amplification Using a Custom Low-Cost Device," Biosensors and Bioelectronics, 2023, 237: 115444.


12. Yang J, Yu, XL, Dong XP, Yu C, Improvement of surimi gel from frozen stored silver carp, Gels, 10(6), 374, 2024, https://doi.org/10.3390/gels10060374


13. Xing Y, Zhang P, Zhang W, Yu C, Luo Z, Continuous cropping of potato changed the metabolic pathway of root exudates to drive rhizosphere microflora, Frontiers in Microbiology, 14, 1318586, 2024, https://doi.org/10.3389/fmicb.2023.1318586


14. Tong T, Qi Y, Bussiere L, Dhar D, Miller C, Yu C, Wang Q, Rational Design of Oral Vaccines by Gut Organoid Mucosal Models, Bioactive Materials, 2023, 30, 116-128, https://doi.org/10.1016/j.bioactmat.2023.07.014


15. Zhao M, Cao X, Wu Y, Zou S, Li Z, Lin X, Ji C, Dong L, Zhang S, Yu C, Liang H, Effects of prebiotics on the fermentation of traditional suancai of Northeast China, Food Science and Human Wellness, 2023, https://doi.org/10.26599/FSHW.2022.9250114


16. Zhang W, Yu C, Yin S, Chang K, Chen K, Xing Y, Yang Y, Transmission and retention of antibiotic resistance genes (ARGs) in chicken and sheep manure composting, Bioresource Technology, 382, 129190, 2023,. https://doi.org/10.1016/j.biortech.2023.129190


17. He Q, Habib F, Tong T, Yu C, Raman Spectroscopy for Detection of Foodborne Pathogens, Chemical Contaminants and Nanoparticles, in Encyclopedia of Food Safety, edited by Byron Brehm-Stecher, Elsevier, 2024.


18. Roque JV, Pola CC, Terra LR, Oliveira TV, Teofilo RF, Gomes CL, Soares NFF, Mapping the Distribution of Additives Within Polymer Films Through Near-Infrared Spectroscopy and Hyperspectral Imaging, in Food Packaging Materials: Current Protocols, pp 183-203. 2024


19. Qian H, Moreira G, Vanegas D, Tang Y, Pola C, Gomes C, McLamore E, Bliznyuk N, Improving high throughput manufacture of laser-inscribed graphene electrodes via hierarchical clustering, Scientific Reports, 1, 7980, 2024


20. Beata M Szydlowska, Cícero C Pola, Zizhen Cai, Lindsay E Chaney, Janan Hui, Robert Sheets, Jeremiah Carpenter, Delphine Dean, Jonathan C Claussen, Carmen L Gomes, Mark C Hersam, Biolayer-Interferometry-Guided Functionalization of Screen-Printed Graphene for Label-Free Electrochemical Virus Detection, ACS Applied Materials & Interfaces, 16(19), 25169-25180, 2024


21. Sara L Silvestre, Maria Morais, Raquel RA Soares, Zachary T Johnson, Eric Benson, Elisabeth Ainsley, Veronica Pham, Jonathan C Claussen, Carmen L Gomes, Rodrigo Martins, Elvira Fortunato, Luis Pereira, João Coelho, Green Fabrication of Stackable Laser‐Induced Graphene Micro‐Supercapacitors under Ambient Conditions: Toward the Design of Truly Sustainable Technological Platforms, Advanced Materials Technologies, 2400261, 2024


22. J Claussen, J Hondred, Enhanced 3D porous architectured electroactive devices via impregnated porogens, US Patent 11,971,383


23. Nathan M Jared, Zachary T Johnson, Cicero C Pola, Kristi K Bez, Krishangee Bez, Shelby L Hooe, Joyce C Breger, Emily A Smith, Igor L Medintz, Nathan M Neihart, Jonathan C Claussen, Biomimetic laser-induced graphene fern leaf and enzymatic biosensor for pesticide spray collection and monitoring, Nanoscale Horizons, 9(9), 1543-1556, 2024


24. Jelena Stanković, Djuradj Milošević, Momir Paunović, Boris Jovanović, Nataša Popović, Jelena Tomović, Ana Atanacković, Katarina Radulović, Davor Lončarević, Maja Raković, Microplastics in the Danube River and Its Main Tributaries—Ingestion by Freshwater Macroinvertebrates, Water, 16(7), 962, 2024


25. Khouloud Sebteoui, Djuradj Milošević, Jelena Stanković, Viktor Baranov, Boris Jovanović, Stefan Krause, Zoltán Csabai, Beneath the surface: Decoding the impact of Chironomus riparius bioturbation on microplastic dispersion in sedimentary matrix, Science of the Total Environment, 919, 170844, 2024


26. Alyssa M Hohman, Rachel Sorenson, Boris Jovanovic, Elizabeth McNeill, The heart of plastic: utilizing the Drosophila model to investigate the effects of micro/nanoplastics on heart function, Frontiers in Toxicology, 6, 1438061, 2024


27. Rachel M Sorensen, Dimitrija Savić-Zdravković, Boris Jovanović, Changes in the wing shape and size in fruit flies exposed to micro and nanoplastics, Chemosphere, 363, 142821, 2024.


28. Ghazy A, Nyarku R, Faraj R, Bentum K, Woube Y, Williams M, Alocilja E, and Abebe W. 2024. Gold Nanoparticle-based Plasmonic Detection of Escherichia coli, Salmonella enterica, Campylobacter jejuni, and Listeria monocytogenes from bovine fecal Samples, Microorganisms, 12, 1069.


29. Caliskan-Aydogan1 O, Zaborney Kline C1, and Alocilja EC3. 2024. Cell Morphology as Biomarker of Carbapenem Exposure, Journal of Antibiotics, 77, pages 600–611 (2024).


30. Caliskan-Aydogan1 O and Alocilja EC3. 2024. A Parallel biosensor platform for the detection of carbapenemase-producing coli in spiked food and water samples, Food Control, Vol. 163, 110485.


31. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Rapid Isolation of Low-level Carbapenem-Resistant E. coli from Water and Foods Using Glycan-Coated Magnetic Nanoparticles, Biosensors 2023, 13(10), 902.


32. Caliskan-Aydogan O1 and Alocilja EC3. 2023. A Review of Carbapenem Resistance in Enterobacterales and Its Detection Techniques. Microorganisms, 2023, 11(6), 1491.


33. Boodoo C1, Dester E1, David J1, Patel V1, Rabin KC, and Alocilja EC3. 2023. Multi-Probe Nano-Genomic Biosensor to Detect aureus from Magnetically-Extracted Food Samples, Biosensors, 2023, 13(6), 608, https://doi.org/10.3390/bios13060608.


34. Sharief S1, Caliskan-Aydogan O1, Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for PCR-less genomic detection of Salmonella from fresh produce, Food Control, Vol. 150, 109770.


35. Boodoo C1, Dester E1, Sharief S1, and Alocilja EC3. 2023. Influence of Biological and Environmental Factors in the Extraction and Concentration of Foodborne Pathogens using Glycan-Coated Magnetic Nanoparticles, Journal of Food Protection, 86(4):100066.


36. Sharief SA1, Caliskan-Aydogan O1, and Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for point-of-use food contamination testing, Biosensors and Bioelectronics: X, 13 (2023), 100322, 9 pp.


37. Bhattarai RK1,3, Basnet HB, Dhakal IP, Alocilja E. 2023. Virulence genes of avian pathogenic Escherichia coli isolated from commercial chicken in Nepal, Comparative Immunology, Microbiology and Infectious Diseases, 95 (2023) 101961.


38. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Nanoparticle-Based Plasmonic Biosensor for the Unamplified Genomic Detection of Carbapenem-Resistant Bacteria, Diagnostics, 2023, 13(4), 656.


39. Hajikhani, M., Hegde, A., Snyder, J., Cheng, J., Lin, M. 2024. Integrating transformer-based machine learning with SERS technology for the analysis of hazardous pesticides in spinach. Hazard. Mater. 470, 134208.


40. Hajikhani, M., Kousheh, S., Lin, M. 2024. Design of a novel SERS substrate by electrospinning for the detection of thiabendazole in soy-based foods. Food Chem. 436, 137703.


41. Zhai, K., Sun, L., Nguyen, T., Lin, M. 2024. Facile synthesis of gold nanostars for duplex detection of pesticide residues in grapes using SERS. Food Sci. 89, 2512-2521.


42. Alsammarraie, F. K., Lin, M., Mustapha, A. 2023. Green synthesis of silver nanomaterials and evaluation of their antibacterial and antioxidant effectiveness in chicken meat. Food Biosci. 56, 103332.


43. Hajikhani, M., Zhang, Y., Gao, X., Lin, M. 2023. Advances in CRISPR-based SERS detection of food contaminants: A review. Trends Food Sci. Technol. 138, 615-627.


44. Wang, W., Yu, Z., Lin, M., Mustapha, A. 2023. Toxicity of silver nanoparticle incorporated-bacterial nanocellulose to human cells and intestinal bacteria.  J. Biol. Macromol. 241, 124705.


45. Weng, Z., You, Z., Li, H., Wu, G., Song, Y., Sun, H., Fradlin, A., Neal-Harris, C., Lin, M., Gao, X., Zhang, Y. 2023. CRISPR-Cas12a biosensor array for ultrasensitive detection of unamplified DNA with single-nucleotide polymorphic discrimination. ACS Sensors. 8(4), 1489-1499.


46. M Liang, L Yuan, C Shao, X Zheng, Q Song, Z Gu, S Lu; 2023, Sequential Visual Sensing of H2O2 and GSH Based on Fluorescent Copper Nanoclusters Incorporated Eggshell Membrane, IEEE Sensors Journal (accepted)


47. Liang, T. Schaffer, A. Sobhan, M. Biesecker, Z. Yang, C. Han, J. Hu, A. Smirnova, Z. Gu, 2023, 3D Cu Pyramid Array Grown on Planar Cu Foil for Stable and Dendrite–Free Lithium Deposition, Materials Science Vol.29 No.4, 2023 (accepted)


48. Y Liang, W Ding, B Yao, F Zheng, A Smirnova, Z Gu, 2023, Mediating Lithium Plating/Stripping by Constructing 3D Au@ Cu Pentagonal Pyramid Array, Batteries 9 (5), 279


49. Yuanzhi Bian,* Debra L. Walter,* Chenming Zhang. Efficiency of interferon-γ in activating dendritic cells and its potential synergy with toll-like receptor agonists. Viruses (MDPI). 2023, 15, 1198. doi.org/10.3390/v15051198.

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7. Buchanan, B., Loeffler, R., Liang, R., & Yoon, J.-Y. (2025). Capillary flow velocity-based length identification of PCR and RPA products on paper microfluidic chips. Biosensors and Bioelectronics, 267, 116861.


8. Caliskan-Aydogan, O., & Alocilja, E. (2024). A parallel biosensor platform for detection of carbapenemase-producing coli in spiked food and water samples. Food Control, 163, 110485.


9. Caliskan-Aydogan, O., Zaborney Kline, C., & Alocilja, E. (2024a). Adhesion capacity of carbapenem-resistant coli with magnetic nanoparticles. Nanomaterials, 14(24), 2010.


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11. Cavallaro, N., Moreira, G., Vanegas, D., Xiang, D., Datta, S., Gomes, C., & McLamore, E. (2024). A Listeria monocytogenes aptasensor for food safety monitoring in hydroponic cultivation. Discover Food, 4, 169.


12. Choi, S.-J., Lee, M., Liang, Y., Lin, E., Khanthaphixay, B., Leigh, P., Hwang, D., & Yoon, J.-Y. (2025). Machine learning classification of quorum sensing-induced bacterial aggregation using flow rate assays on paper chips. Biosensors and Bioelectronics, 284, 117563.


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16. Erdenebat, U., Bendickson, L., David, A., Shrotriya, P., & Nilsen-Hamilton, M. (2025). Developing a proxy virus for an aptasensor and quantifying aptamer interactions with surface proteins. Journal of Biological Chemistry, 301(5), 109780.


17. Ghazy, A., Nyarku, R., Faraj, R., Bentum, K., Woube, Y., Williams, M., Alocilja, E., & Abebe, W. (2024). Gold nanoparticle-based plasmonic detection of Escherichia coli, Salmonella enterica, Campylobacter jejuni, and Listeria monocytogenes from bovine fecal samples. Microorganisms, 12(6), 1069.


18. Hajikhani, M., Hegde, A., Snyder, J., Cheng, J., & Lin, M. (2024). Integrating transformer-based machine learning with SERS technology for the analysis of hazardous pesticides in spinach. Journal of Hazardous Materials, 470, 134208.


19. Hajikhani, M., Kousheh, S., & Lin, M. (2024). Design of a novel SERS substrate by electrospinning for the detection of thiabendazole in soy-based foods. Food Chemistry, 436, 137703.


20. Hao, X., Wang, S, Fu, Y., Liu, Y., Shen, H., Jiang, L., McLamore, E., & Shen, Y. (2024) The WRKY46-MYC2 module is critical for E-2-hexenal induced anti-herbivore responses by promoting the accumulation of flavonoids. Plant Communications, 5(2), 100734.


21. Hayashi, Y., Fujii, T., Kim, S., Badylak, S., D’Amore, Mutsuga, M., & Wagner, W. (2024). Intervening to preserve function in ischemic cardiomyopathy with a porous hydrogel and extracellular matrix composite in a rat myocardial infarction model. Advanced Healthcare Materials, 14(2), e2402757.


22. Hayashi, Y., Kim, S., Fujii, T., Pedersen, D. D., Ozeki, T., Jiang, H., D’Amore, A., & Wagner, W. R. (2025). Placement of an elastic, biohybrid patch in a model of right heart failure with pulmonary artery banding. Frontiers in Bioengineering and Biotechnology, 12:1485740.


23. Hegde, A., Hajikhani, M., Snyder, J., Cheng, J., & Lin, M. (2025). Leveraging SERS and transformer models for simultaneous detection of multiple pesticides in fresh produce. ACS Applied Materials and Interfaces Journal, 17, 2018-2031.


24. Ibrahim, M., Seresht, H., Kum, C., Cho, J., Jin, G., An, S. H., Ye, S., Kim, S., Wagner, W., & Chun, Y. (2025). Novel laser-textured grooves extended to the sidewall edges of CoCr surfaces for rapid and selective endothelialization following coronary artery stenting. Biomaterials, 321, 123299.


25. Ibrahim, S., Gondhalekar, A., Ristroph, K., & Baributsa, D. (2025). Geranium oil nanoemulsion delivers more potent and persistent fumigant control of Callosobruchus maculatus in stored grain. Foods, 14(20), 3514.


26. Johnson, Z., Ellis, G., Pola, C., Banwart, C., McCormick, A., Miliao, G., Duong, D., Opare-Addo, J., Sista, H., Smith, E., Hu, H., Gomes, C., & Claussen, J. (2025). Enhanced laser-induced graphene microfluidic integrated sensors (LIGMIS) for on-site biomedical and environmental monitoring. Small, 21(32), e70035.


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28. Kohyama, K., Mittal, A., Alattar, A., Mantena, R., Cao, C., Kim, S., Wagner, W., Friedlander, R., & Nowicki, K. (2025). A murine model of carotid aneurysm formation. Journal of Visualized Experiments, 203, 3791/67872.


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30. Liang, W., Li, S., Liu, J., Cai, L., Zhang, W., & Yu, C. (2025). Additives change microbiota to promote humic acid formation in composting of vegetable wastes. Industrial Crops and Products, 232, 121307.


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35. Reed, J. D., Krueger, C. G., Alfaro-Viquez, E., Madrigal-Carballo, S., Saborio, H. U., & Gunasekaran, S. (2025). Tannin composite fibers. S. Patent 12,234,578.


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38. Sebteoui, K., Csabai, Z., Stanković, J., Baranov, V., Jovanović, B., & Milošević, D. (2025). Downsizing plastics, upsizing impact: How microplastic particle size affects Chironomus riparius bioturbation activity. Environmental Research, 270, 121055.


39. Sharma, B., Kohay, H., Sharma, S., Youngblood, M., Cochran, J., Unrine, J., Tsyusko, O., Lowry, G., & Giraldo, J. P. (2025). Controlled nitrogen release by hydroxyapatite nanomaterials enhances plant growth. ACS Nano, 19(3), 3906-3919.


40. Shobade, S., Nilsen-Hamilton, M., & Zabotina, O. (2025). Plant defense proteins: Recent discoveries and applications. Plants, 14(13), 2069.


41. Sorensen, R., Savić-Zdravković, D., & Jovanović, B. (2024). Changes in wing shape and size in fruit flies exposed to micro- and nanoplastics. Chemosphere, 363, 142821.


42. Tang, Y., Moreiraf, G., Vanegas, D., Datta, S., & McLamore, E. (2024) Batch-to-batch variation in laser inscribed graphene (LIG) electrodes for electrochemical sensing. Micromachines, 15(7), 874-890.


43. Tang, Y., Pershina, D., Abdessalam, S., Falk, L., Liang, Y., Hong, S., Yim, U., & Yoon, J.-Y. (2025). Low-cost, multispectral machine learning classification of simulated airborne micro/nanoplastics. Journal of Hazardous Materials, 488, 137443.


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46. Walter, D., Ci, Q., Hu, H., DeHority, R., Hinckley, J., Bian, Y., Serpa, P., Southard, T., Werre, S., Pravetoni, M., Ehrich, M., & Zhang, C. (2025). Safety and toxicological evaluation of subunit keyhole limpet hemocyanin-loaded lipid-PLGA hybrid nanoparticles (sKLH-hNPs) as a nanocarrier for an opioid use disorder vaccine. International Journal of Toxicology, 44(5), 395-406.


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49. Yousaf, M., Madeo Cortarelli, L., Jebet, N., Unrine, J., Aich, N., Tsyusko, O., & Escobar, I. (2025). Characterization, performance, and toxicological assessment of polysulfone-sulfonated polyether ether ketone membranes for water separation applications. Membranes, 15(3), 87.


50. Zhai, K., Sun, L., Nguyen, T., & Lin, M. (2024). Facile synthesis of gold nanostars for duplex detection of pesticide residues in grapes using SERS. Journal of Food Science, 89(4), 2512-2521.


51. Zhang, W., Li, S., Zhang, P., Han, X., Xing, Y., & Yu, C. (2024). The colonization of synthetic microbial communities carried by bio-organic fertilizers in continuous cropping soil for potato plants. Microorganisms, 12(11), 2371.


52. Zribi, R., Johnson, Z., Ellis, G., Banwart, C., Opare-Addo, J., Hooe, S., Breger, J., Foti, A., Gucciardi, P., Smith, E., Gomes, C., Medintz, I., Neri, G., & Claussen, J. (2024). Molybdenum disulfide/diselenide-laser-induced graphene-glycine oxidase composite for electrochemical sensing of glyphosate. ACS Applied Materials & Interfaces, 17(1), 247-259.