10/14/2022

1. Akarapipad A, Kaarj K, Breshears LE, Sosnowski K, Baker B, Nguyen BT, Eades C, Uhrlaub JL, Quick G, Nikolich-Zugich J, Worobey M, and Yoon J-Y, "Smartphone-based Sensitive Detection of SARS-CoV-2 from Saline Gargle Samples via Flow Profile Analysis on Paper Microfluidic Chip," Biosensors and Bioelectronics, 2022, 207: 114192.


2. Angelé-Martínez, C., F.S. Ameer, Y.S. Raval, G. Huang, T.R.J. Tzeng, J.N Anker, J. Brumaghim (2022) Polyphenol effects on CuO-nanoparticle-mediated DNA damage, reactive oxygen species generation, and fibroblast cell death. Toxicology in Vitro 78: 105252.


3. Breshears LE, Nguyen BT, Akarapipad P, Sosnowski K, Kaarj K, Quirk G, Uhrlaub JL, Nikolich-Zugich J, Worobey M, and Yoon J-Y, "Sensitive, Smartphone-based SARS-CoV-2 Detection from Clinical Saline Gargle Samples," PNAS Nexus, 2022, 1(1): pgac028.


4. Breshears LE, Nguyen BT, Mata-Robles S, Wu L, and Yoon J-Y, "Biosensor Detection of Airborne Respiratory Viruses Such As SARS-CoV-2," SLAS Technology, 2022, 27(1): 4-17.


5. Bahng EJ, Rutenberg A, Gomes C. Spectrum and Matrix of Inclusion Tendencies and Experiences using Narrative Stories, Iowa State Conference on Race and Ethnicity, 23(1), 2022


6. Buchanan BC and Yoon J-Y, "Microscopic Imaging Methods for Organ-on-a-Chip Platforms," Micromachines, 2022, 13: 328.


7. Buchanan BC, Safavinia B, Wu L, and Yoon J-Y, "Smartphone-Based Autofluorescence Imaging to Detect Bacterial Species on Laboratory Surfaces," Analyst, 2022, 147: 2980-2987. Analyst HOT Articles 2022.


8. Day AS, Ulep T-H, Budiman E, Dieckhaus L, Safavinia B,  Hertenstein T, Yoon J-Y, "Contamination-resistant, Rapid Emulsion-based Isothermal Nucleic Acid Amplification with Mie-scatter Inspired Light Scatter Analysis for Bacterial Identification," Scientific Reports, 2021, 11: 19933.


9. Diaz, L. M., B. E. Lee, and D. M. Jenkins. 2021. Real-time optical analysis of a colorimetric LAMP assay for SARS-CoV-2 in saliva with a handheld instrument improves accuracy compared to endpoint assessment. Journal of Biomolecular Techniques. 32(3): 158–171. https://doi.org/10.7171/jbt.21-3203-011.


10. Domingo, R., C. Perez, D. Klair, H. Vu, A. Candelario-Tochiki, X. Wang, A. Camson, J. N. Uy, M. Salameh, D. Arizala, S. Dobhal, G. Boluk, J.-P. Bingham, F. Ochoa-Corona, M. E. Ali, J. P. Stack, J. Fletcher, J. Odani, D. M. Jenkins, A. M. Alvarez, and M. Arif, M. 2021. Genome-informed loop-mediated isothermal amplification assay for specific detection of Pectobacterium parmentieri in infected potato tissues and soil. Sci. Rep. 11, 21948. https://doi.org/10.1038/s41598-021-01196-4.


11. Chen* C., Unrine J.M., Hu Y., Guo L., Tsyusko O.V., Fan Z., Liu S., Wei G. 2021. Responses of soil bacteria and fungal communities to pristine and sulfidized zinc oxide nanoparticles relative to Zn ions. Journal of Hazardous Materials 405, 124258.


12. Choo, K. W., Dhital, R., Mao, L., Lin, M., Mustapha, A. 2021. Development of polyvinyl alcohol/chitosan/ modified bacterial nanocellulose films incorporated with 4-hexylresorcinol for food packaging applications. Food Packag. Shelf Life. 30, 100769


13. Cícero C Pola, Sonal V Rangnekar, Robert Sheets, Beata M Szydłowska, Julia R Downing, Kshama W Parate, Shay G Wallace, Daphne Tsai, Mark C Hersam, Carmen L Gomes, Jonathan C Claussen, Aerosol-jet-printed graphene electrochemical immunosensors for rapid and label-free detection of SARS-CoV-2 in saliva, 2D materials, 9(3), 035016, 2022.


14. Diehl, M., Kang, M.J., Reyes-De-Corcuera, J.I.* (2022) Effect of high-pressure technologies on enzymes used in nonfood processing applications in Effect of High Pressure Technologies on Enzymes, Leite Júnior, B. and Tribst, A., Editors. Academic Press. In press


15. Eke J., Banks L., Mottaleb M.A., Morris A.J., Tsyusko O.V., and Escobar* I.C. 2021. Dual-Functional Phosphorene Nanocomposite Membranes for the Treatment of Perfluorinated Water: An Investigation of perfluorooctanoic acid removal via filtration combined with ultraviolet irradiation or oxygenation. Membranes 11, no. 1: 18.


16. Eluchie C, Hu H, Johnson Z, Gomes C, Claussen J, Hu H, An Explorative Study to Use Graphene-based Materials for Aircraft Icing Mitigation, AIAA AVIATION 2022 Forum, 4115, 2022. https://doi.org/10.2514/6.2022-4115.vid


17. Hjort R, Gomes CL, The Importance of Sensors in Water Quality Research and Monitoring, Resource Magazine, 29(4), 17-19, 2022


18. Hjort, R.G., R.R.A. Soares, J. Li, D. Jing, L. Hartfiel, B. Chen, B. Van Belle, M. Soupir, E. Smith, E.S. McLamore, J.C. Claussen, C.L. Gomes (2022) Hydrophobic laser-induced graphene potentiometric ion-selective electrodes for nitrate sensing. Microchimica Acta 189 (3), 1-11.


19. Jiao, C., Z. Guo, J. Gong, Y. Zuo, S. Li, D. Vanegas, E.S. McLamore, Y. Shen (2022) CML8 and GAD4 function in (Z)–3–hexenol–mediated defense by regulating γ–aminobutyric acid accumulation in Arabidopsis. Plant Physiology and Biochemistry 186, 135-144.


20. Kim S, Patarajarin Akarapipad, Brandon T. Nguyen, Lane E. Breshears, Katelyn Sosnowski, Jacob Baker, Jennifer L. Uhrlaub, Janko Nikolich-Zugich, and Jeong-Yeol Yoon, "Direct Capture and Smartphone Quantification of Airborne SARS-CoV-2 on a Paper Microfluidic Chip," Biosensors and Bioelectronics, 2022, 200: 113912


21. Kim S, Day AS, and Yoon J-Y, "Machine Learning Classification of Bacterial Species Using Mix-and-Match Reagents on Paper Microfluidic Chips and Smartphone-based Capillary Flow Analysis," Analytical and Bioanalytical Chemistry, 2022, 414: 3895-3904.


22. Kim S, Ciara Eades, and Yoon J-Y, "COVID-19 Variants’ Cross-Reactivity on the Paper Microfluidic Particle Counting Immunoassay," Analytical and Bioanalytical Chemistry, 2022, doi:10.1007/s00216-022-04333-8. Papers in Forefront.


23. Lee, B.-E., T. Kang,  M. Jenkins, Y. Li, M. Wall, and S. Jun. 2022. A single-walled carbon nanotubes-based electrochemical impedance immunosensor for on-site detection of Listeria monocytogenes. Journal of Food Science. 87(1): 280-288. 10.1111/1750-3841.15996


24. Liang Y, Avory Zhou, Candace S. Bever, Luisa W. Cheng, and Jeong-Yeol Yoon, "Smartphone-Based Paper Microfluidic Competitive Immunoassay for the Detection of Alpha-Amanitin from Mushrooms," Microchimica Acta, 2022, 189: 322.


25. Liang Y, Avory Zhou, and Jeong-Yeol Yoon, "Machine Learning-Based Quantification of (-)-trans-delta-Tetrahydrocannabinol from Human Saliva Samples on a Smartphone-Based Paper Microfluidic Platform," ACS Omega, 2022, 7(34): 30064–30073.


26. Lin, M.-H., Sun, L., Kong, F., Lin, M. 2021. Rapid detection of paraquat residues in green tea using surface-enhanced Raman spectroscopy (SERS) coupled with gold nanostars. Food Control. 130, 108280.


27. Mannier C and Yoon J-Y, "Progression of LAMP as a Result of the COVID-19 Pandemic: Is PCR Finally Rivaled?" Biosensors, 2022, 12: 492.


28. McLamore, E.S., G. Moreira, D.C. Vanegas, S.P.A. Datta (2022) Context-Aware Diagnostic Specificity (CADS). Biosensors 12 (2), 101.


29. Oliveira, D.A., S. Althawab, E.S. McLamore, C.L. Gomes (2021) One-step fabrication of stimuli-responsive chitosan-platinum brushes for Listeria monocytogenes detection. Biosensors, 1(12), 511; DOI: 10.3390/bios11120511.


30. Reyes-De-Corcuera, J.I.* (2022) Enzymes – Inspring evolutionary wisdom. In nanozymes, advances and applications. Gunasekaran, S., Editor, CRC Press. 1-14.


31. Sosnowski K, Loh A, Zubler AV, Shir H, Ha SY, Yim UH, Yoon J-Y, "Machine Learning Techniques for Chemical and Type Analysis of Ocean Oil Samples via Handheld Spectrophotometer Device," Biosensors and Bioelectronics: X, 2022, 10: 100128.


32. Summerlin, H., C.C Pola, K.R. Chamakura K. Borel, R. Young, T. Gentry, E.S. McLamore, R. Karthikeyan, C. Gomes, (2021). Fate of enteric viruses during leafy greens (romaine lettuce) production using treated municipal wastewater and AP205 bacteriophage as a surrogate. J. Environmental Science and Health, Part A. 56(10): 1138-1144.


33. Sun J, Liu X, Wang Z, Yin F, Liu H, Nakamura Y, Yu C, Zhou D, Gastrointestinal digestion and absorption characterization in vitro of zinc‐chelating hydrolysate from scallop adductor (Patinopecten yessoensis), Journal of the Science of Food and Agriculture, 102(8), 3277-3286, 2022. https://doi.org/10.1002/jsfa.11673.


34. Wang Z, Sun J, Ma X, Liu X, Yin F, Li D, Nakamura Y, Yu C, Zhou D, Characterization of a synthetic zinc‐chelating peptide from sea cucumber (Stichopus japonicus) and its gastrointestinal digestion and absorption in vitro, Journal of the Science of Food and Agriculture, 2022, https://doi.org/10.1002/jsfa.11811


35. Xie Y, Yu X, Wang Y, Yu C, Prakash S, Zhu B, Dong X, Role of dietary fiber and flaxseed oil in altering the physicochemical properties and 3D printability of cod protein composite gel, Journal of Food Engineering, 327, 111053, 2022 https://doi.org/10.1016/j.jfoodeng.2022.111053


36. Xie Y, Yu X, Wang Z, Yu C, Prakash S, Dong X, The synergistic effects of myofibrillar protein enrichment and homogenization on the quality of cod protein gel. Food Hydrocolloids, 127, 107468, 2022 https://doi.org/10.1016/j.biortech.2021.126626


37. Yoon J-Y, "Tissue Engineering: A Primer with Laboratory Demonstrations," Springer: Cham, Switzerland, 2022, ISBN: 978-3-030-83695-5.


38. Yin S, Zhang W, Tong T, Yu C, Chang X, Chen K, Xing Y, Yang Y, Feedstock-dependent abundance of functional genes related to nitrogen transformation controlled nitrogen loss in composting, Bioresource Technology, 2022, https://doi.org/10.1016/j.biortech.2021.126626


39. Yu C, Takhistov P, Alocilja E, Reyes de Corcuera J, Frey MW, Gomes CL, Mao Y, McLamore ES, Lin M, Tsyusko OV, Tzeng T-R, Yoon J-Y, Zhou A, Bioanalytical approaches for the detection, characterization, and risk assessment of micro- and nano-plastics in agriculture and food systems, Analytical and Bioanalytical Chemistry, 2022. https://doi.org/10.1007/s00216-022-04069-5.


40. Yu X, Wang Y, Xie Y, Wei S, Ding H, Yu C, Dong X, Gelation properties and protein conformation of Grass Carp fish ball as influenced by egg white protein, Journal of Texture Studies. 2022. https://doi.org/10.1111/jtxs.12668


41. Yu W, Wang Z, Pan Y, Jiang P, Pan J, Yu C, Dong X, Effect of κ-carrageenan on quality improvement of 3D printed Hypophthalmichthys molitrix-sea cucumber compound surimi product, LWT, 154, 112279, 2022. https://doi.org/10.1016/j.lwt.2021.112279


42. Zachary T Johnson, Nathan Jared, John K Peterson, Jingzhe Li, Emily A Smith, Scott A Walper, Shelby L Hooe, Joyce C Breger, Igor L Medintz, Carmen Gomes, Jonathan C Claussen, Enzymatic Laser‐Induced Graphene Biosensor for Electrochemical Sensing of the Herbicide Glyphosate, Global Challenges, 6(9), 2200057, 2022 https://doi.org/10.1002/gch2.202200057.


43. Zenhausern R, Alexander S. Day, Babak Safavinia, Seungmin Han, Paige E. Rudy, Young-Wook Won, and Jeong-Yeol Yoon, "Natural Killer Cell Detection, Quantification, and Subpopulation Identification on Paper Microfluidic Cell Chromatography Using Smartphone-based Machine Learning Classification," Biosensors and Bioelectronics, 2022, 200: 113916.


44. Zhang W., Karagiannidis I., Van Vliet E.D.S, Yao R., Beswick E., Zhou A., "Effects of granulocyte colony-stimulating factor on colon and breast cancer cells investigated by machine learning based non-invasive Raman spectroscopy", Analyst. 2021, 146, 6124-6131


45. Zhang W, Yu C, Wang X, Yin S, Chang X, Additives improved saprotrophic fungi for formation of humic acids in chicken manure and corn stover mix composting, Bioresource Technology, 346, 126626, 2022, https://doi.org/10.1016/j.biortech.2021.126626


46. Zhao, Y., Zhang, W., Devener, B.V., Bunch, T.D., Zhou, A., Isom, S. Clay, “In situ characterization of porcine fibroblasts in response to silver ions by Raman spectroscopy and liquid scanning transmission electron microscopy”, Talanta, 2022, 246 (15) 123522.

 

10/05/2023

1. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Rapid Isolation of Low-level Carbapenem-Resistant E. coli from Water and Foods Using Glycan-Coated Magnetic Nanoparticles, Biosensors 2023, 13(10), 902; https://doi.org/10.3390/bios13100902


2. Caliskan-Aydogan O1 and Alocilja EC3. 2023. A Review of Carbapenem Resistance in Enterobacterales and Its Detection Techniques. Microorganisms, 2023, 11(6), 1491; https://doi.org/10.3390/microorganisms11061491


3. Sharief, S. A., Caliskan-Aydogan, O., & Alocilja, E. C. 2023. Carbohydrate-coated nanoparticles for PCR-less genomic detection of Salmonella from fresh produce. Food Control, 150 (2023) 109770


4. Boodoo C1, Dester E1, David J1, Patel V1, Rabin KC, and Alocilja EC3. 2023. Multi-Probe Nano-Genomic Biosensor to Detect S. aureus from Magnetically-Extracted Food Samples, Biosensors, accepted, in press. Biosensors 2023, 13(6), 608


5. Sharief S1, Caliskan-Aydogan O1, Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for PCR-less genomic detection of Salmonella from fresh produce, Food Control, Vol. 150, 109770.


6. Boodoo C1, Dester E1, Sharief S1, and Alocilja EC3. 2023. Influence of Biological and Environmental Factors in the Extraction and Concentration of Foodborne Pathogens using Glycan-Coated Magnetic Nanoparticles,  Journal of Food Protection, 86(4):100066.


7. Sharief SA1, Caliskan-Aydogan O1, and Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for point-of-use food contamination testing, Biosensors and Bioelectronics: X, 13 (2023), 100322, 9 pp.


8. Bhattarai RK1,3, Basnet HB, Dhakal IP, Alocilja E. 2023. Virulence genes of avian pathogenic Escherichia coli isolated from commercial chicken in Nepal, Comparative Immunology, Microbiology and Infectious Diseases, 95 (2023) 101961,


9. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Nanoparticle-Based Plasmonic Biosensor for the Unamplified Genomic Detection of Carbapenem-Resistant Bacteria, Diagnostics, Diagnostics 2023, 13(4), 656


10. Yuanzhi Bian, Debra L. Walter, Chenming Zhang. Efficiency of interferon-γ in activating dendritic cells and its potential synergy with toll-like receptor agonists. Viruses (MDPI). 2023, 15, 1198.doi.org/10.3390/v15051198.


11. Hajikhani, M., Zhang, Y., Gao, X., Lin, M. 2023. Advances in CRISPR-based SERS detection of food contaminants: A review. Trends Food Sci. Technol. 138, 615-627.


12. Wang, W., Yu, Z., Lin, M., Mustapha, A. 2023. Toxicity of silver nanoparticle incorporated-bacterial nanocellulose to human cells and intestinal bacteria. Int. J. Biol. Macromol. 241, 124705.


13. Weng, Z., You, Z., Li, H., Wu, G., Song, Y., Sun, H., Fradlin, A., Neal-Harris, C., Lin, M., Gao, X., Zhang, Y. 2023. CRISPR-Cas12a biosensor array for ultrasensitive detection of unamplified DNA with single-nucleotide polymorphic discrimination. ACS Sensors. 8(4), 1489-1499.


14. Asgari, S., Dhital, R., Mustapha, A., Lin, M. 2022. Duplex detection of foodborne pathogens using a SERS optofluidic sensor coupled with immunoassay. Int. J. Food Microbiol. 383, 109947.


15. Hajikhani, M., Lin, M. 2022. A review on designing nanofibers with high porous and rough surface via electrospinning technology for rapid detection of food quality and safety attributes. Trends Food Sci. Technol. 128, 118-128.


16. Asgari, S., Dhital, R., Ali Aghvami, S., Mustapha, A., Zhang, Y., Lin, M. 2022. Separation and detection of E. coli O157:H7 using a SERS-based microfluidic immunosensor. Microchimica Acta. 189, 111.


17. Diehl, M., Kang, M.J., Reyes-De-Corcuera, J.I.* (2023) Effect of high-pressure technologies on enzymes used in nonfood processing applications in Effect of High-Pressure Technologies on Enzymes, Leite Júnior, B. and Tribst, A., Editors. Academic Press, 405-424.


18. Tong T,* Qi Y, Bussiere L, Dhar D, Miller C, Yu C, Wang Q, Rational Design of Oral Vaccines by Gut Organoid Mucosal Models, Bioactive Materials, 2023, 30, 116-128, https://doi.org/10.1016/j.bioactmat.2023.07.014


19. Zhao M, Cao X, Wu Y, Zou S, Li Z, Lin X, Ji C, Dong L, Zhang S, Yu C, Liang H, Effects of prebiotics on the fermentation of traditional suancai of Northeast China, Food Science and Human Wellness, 2023, https://doi.org/10.26599/FSHW.2022.9250114


20. Zhou Y, Zheng J, Zhao J, Li S, Xing J, Ai C, Yu C, Yang S, Yang J, Oxygenated storage alleviates autolysis of the sea cucumber Apostichopus japonicus during transport. Aquaculture International, 2023. https://doi.org/10.1007/s10499-023-01108-5


21. Zhang W, Yu C, Yin S, Chang K, Chen K, Xing Y, Yang Y, Transmission and retention of antibiotic resistance genes (ARGs) in chicken and sheep manure composting, Bioresource Technology, 382, 129190, 2023. https://doi.org/10.1016/j.biortech.2023.129190


22. Wang Z, Yu X*, Zhao W, Wang Y, Li S, Yu C, Dong X, 3D printability of sturgeon paste as affected by colloid milling. Journal of Food Engineering, 346, 111429, 2023, https://doi.org/10.1016/j.jfoodeng.2023.111429


23. Chen KS, Yu C, Cai L, Zhang W, Xing Y, Yang Y, Bacterial community succession in aerobic-anaerobic-coupled and aerobic composting with mown hay affected C and N losses, Environmental Science and Pollution Research, 2023, https://doi.org/10.1007/s11356-023-27572-3


24. He Q*, Tong TJ*, Yu C and Wang Q, Advances in Algin and Alginate-Hybrid Materials for Drug Delivery and Tissue Engineering, Marine Drugs, 21(1), 14, 2023, https://doi.org/10.3390/md21010014


25. Leng L, Zou H, Wang Y, Yu C, Qi H, Seaweed Slurry Improved Gel Properties and Enhanced Protein Structure of Silver Carp (Hypophthalmichthys molitrix) Surimi, Foods, 11(19), 3115, 2022, https://doi.org/10.3390/foods11193115


26. Liu Y*, Wang Z, Huang Y, Konno K, Tong T*, Yu C, Zhu B, Dong X, Characteristic stable structure of the myosin rod in dark muscle of yellowtail kingfish (Seriola aureovittata), International Journal of Food Science and Technology, 2022, https://doi.org/10.1111/ijfs.16146

 

10/21/2024

1. Yan Liang, Bradley Khanthaphixay, Jocelyn Reynolds, Preston J. Leigh, Melissa L. Lim, and Jeong-Yeol Yoon, "A Smartphone-Based Approach for Comprehensive Soil Microbiome Profiling," Applied Physics Reviews, 2024, 11(3): 031412.


2. Jeong-Yeol Yoon and Chenxu Yu, Editors, "Machine Learning and Artificial Intelligence in Chemical and Biological Sensing," Elsevier: Amsterdam/London/Cambridge, 2024, ISBN: 978-0-443-22001-2 (paperback), 978-0-443-22000-5 (eBook).


3. Jeong-Yeol Yoon, "Chapter 10 - ML-Assisted Biosensors Utilizing a Set of Biological Polymers," in Machine Learning and Artificial Intelligence in Chemical and Biological Sensing, Editors: Jeong-Yeol Yoon and Chenxu Yu, Elsevier: Amsterdam/London/Cambridge, 2024, pp.259-274.


4. Chenxu Yu and Jeong-Yeol Yoon, "Chapter 4 - ML-Assisted E-Nose and Gas Sensors," in Machine Learning and Artificial Intelligence in Chemical and Biological Sensing, Editors: Jeong-Yeol Yoon and Chenxu Yu, Elsevier: Amsterdam/London/Cambridge, 2024, pp.83-112.


5. Jeong-Yeol Yoon, "Chapter 3 - Use of ML/AI in Chemical Sensors and Biosensors," in Machine Learning and Artificial Intelligence in Chemical and Biological Sensing, Editors: Jeong-Yeol Yoon and Chenxu Yu, Elsevier: Amsterdam/London/Cambridge, 2024, pp.71-81.


6. Yan Liang and Jeong-Yeol Yoon, "Chapter 2 - Fundamentals of Machine Learning," in Machine Learning and Artificial Intelligence in Chemical and Biological Sensing, Editors: Jeong-Yeol Yoon and Chenxu Yu, Elsevier: Amsterdam/London/Cambridge, 2024, pp.23-70.


7. Yan Liang and Jeong-Yeol Yoon, "Sensors for Blood Brain Barrier on a Chip," Vitamins and Hormones, 2024, 126, 219-240.


8. Bailey C. Buchanan, Yisha Tang, Hannah A. Lopez, Nancy G. Casanova, Joe G.N. Garcia, and Jeong-Yeol Yoon, "Development of a Cloud-Based Flow Rate Tool for eNAMPT Biomarker Detection," PNAS Nexus, 2024, 3(5): pgae173.


9. Chloe Thomas, Togzhan Spatayeva, Dawon Yu, Andrew Loh, Un Hyuk Yim, and Jeong-Yeol Yoon, "A Comparison of Current Analytical Methods for Detecting Particulate Matter and Micro/Nanoplastics," Applied Physics Reviews, 2024, 11(1): 011313.


10. Sinyang Kim, Katelyn Sosnowski, Dong Soo Hwang, and Jeong-Yeol Yoon, "Smartphone-Based Microalgae Monitoring Platform Using Machine Learning," ACS ES&T Engineering, 2024, 4(1): 186-195.


11. Tyler Hertenstein, Yisha Tang, Alexander S. Day, Jocelyn Reynolds, Patrick V. Viboolmate, and Jeong-Yeol Yoon, "Rapid and Sensitive Detection of miRNA Via Light Scatter-Aided Emulsion-Based Isothermal Amplification Using a Custom Low-Cost Device," Biosensors and Bioelectronics, 2023, 237: 115444.


12. Yang J, Yu, XL, Dong XP, Yu C, Improvement of surimi gel from frozen stored silver carp, Gels, 10(6), 374, 2024, https://doi.org/10.3390/gels10060374


13. Xing Y, Zhang P, Zhang W, Yu C, Luo Z, Continuous cropping of potato changed the metabolic pathway of root exudates to drive rhizosphere microflora, Frontiers in Microbiology, 14, 1318586, 2024, https://doi.org/10.3389/fmicb.2023.1318586


14. Tong T, Qi Y, Bussiere L, Dhar D, Miller C, Yu C, Wang Q, Rational Design of Oral Vaccines by Gut Organoid Mucosal Models, Bioactive Materials, 2023, 30, 116-128, https://doi.org/10.1016/j.bioactmat.2023.07.014


15. Zhao M, Cao X, Wu Y, Zou S, Li Z, Lin X, Ji C, Dong L, Zhang S, Yu C, Liang H, Effects of prebiotics on the fermentation of traditional suancai of Northeast China, Food Science and Human Wellness, 2023, https://doi.org/10.26599/FSHW.2022.9250114


16. Zhang W, Yu C, Yin S, Chang K, Chen K, Xing Y, Yang Y, Transmission and retention of antibiotic resistance genes (ARGs) in chicken and sheep manure composting, Bioresource Technology, 382, 129190, 2023,. https://doi.org/10.1016/j.biortech.2023.129190


17. He Q, Habib F, Tong T, Yu C, Raman Spectroscopy for Detection of Foodborne Pathogens, Chemical Contaminants and Nanoparticles, in Encyclopedia of Food Safety, edited by Byron Brehm-Stecher, Elsevier, 2024.


18. Roque JV, Pola CC, Terra LR, Oliveira TV, Teofilo RF, Gomes CL, Soares NFF, Mapping the Distribution of Additives Within Polymer Films Through Near-Infrared Spectroscopy and Hyperspectral Imaging, in Food Packaging Materials: Current Protocols, pp 183-203. 2024


19. Qian H, Moreira G, Vanegas D, Tang Y, Pola C, Gomes C, McLamore E, Bliznyuk N, Improving high throughput manufacture of laser-inscribed graphene electrodes via hierarchical clustering, Scientific Reports, 1, 7980, 2024


20. Beata M Szydlowska, Cícero C Pola, Zizhen Cai, Lindsay E Chaney, Janan Hui, Robert Sheets, Jeremiah Carpenter, Delphine Dean, Jonathan C Claussen, Carmen L Gomes, Mark C Hersam, Biolayer-Interferometry-Guided Functionalization of Screen-Printed Graphene for Label-Free Electrochemical Virus Detection, ACS Applied Materials & Interfaces, 16(19), 25169-25180, 2024


21. Sara L Silvestre, Maria Morais, Raquel RA Soares, Zachary T Johnson, Eric Benson, Elisabeth Ainsley, Veronica Pham, Jonathan C Claussen, Carmen L Gomes, Rodrigo Martins, Elvira Fortunato, Luis Pereira, João Coelho, Green Fabrication of Stackable Laser‐Induced Graphene Micro‐Supercapacitors under Ambient Conditions: Toward the Design of Truly Sustainable Technological Platforms, Advanced Materials Technologies, 2400261, 2024


22. J Claussen, J Hondred, Enhanced 3D porous architectured electroactive devices via impregnated porogens, US Patent 11,971,383


23. Nathan M Jared, Zachary T Johnson, Cicero C Pola, Kristi K Bez, Krishangee Bez, Shelby L Hooe, Joyce C Breger, Emily A Smith, Igor L Medintz, Nathan M Neihart, Jonathan C Claussen, Biomimetic laser-induced graphene fern leaf and enzymatic biosensor for pesticide spray collection and monitoring, Nanoscale Horizons, 9(9), 1543-1556, 2024


24. Jelena Stanković, Djuradj Milošević, Momir Paunović, Boris Jovanović, Nataša Popović, Jelena Tomović, Ana Atanacković, Katarina Radulović, Davor Lončarević, Maja Raković, Microplastics in the Danube River and Its Main Tributaries—Ingestion by Freshwater Macroinvertebrates, Water, 16(7), 962, 2024


25. Khouloud Sebteoui, Djuradj Milošević, Jelena Stanković, Viktor Baranov, Boris Jovanović, Stefan Krause, Zoltán Csabai, Beneath the surface: Decoding the impact of Chironomus riparius bioturbation on microplastic dispersion in sedimentary matrix, Science of the Total Environment, 919, 170844, 2024


26. Alyssa M Hohman, Rachel Sorenson, Boris Jovanovic, Elizabeth McNeill, The heart of plastic: utilizing the Drosophila model to investigate the effects of micro/nanoplastics on heart function, Frontiers in Toxicology, 6, 1438061, 2024


27. Rachel M Sorensen, Dimitrija Savić-Zdravković, Boris Jovanović, Changes in the wing shape and size in fruit flies exposed to micro and nanoplastics, Chemosphere, 363, 142821, 2024.


28. Ghazy A, Nyarku R, Faraj R, Bentum K, Woube Y, Williams M, Alocilja E, and Abebe W. 2024. Gold Nanoparticle-based Plasmonic Detection of Escherichia coli, Salmonella enterica, Campylobacter jejuni, and Listeria monocytogenes from bovine fecal Samples, Microorganisms, 12, 1069.


29. Caliskan-Aydogan1 O, Zaborney Kline C1, and Alocilja EC3. 2024. Cell Morphology as Biomarker of Carbapenem Exposure, Journal of Antibiotics, 77, pages 600–611 (2024).


30. Caliskan-Aydogan1 O and Alocilja EC3. 2024. A Parallel biosensor platform for the detection of carbapenemase-producing coli in spiked food and water samples, Food Control, Vol. 163, 110485.


31. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Rapid Isolation of Low-level Carbapenem-Resistant E. coli from Water and Foods Using Glycan-Coated Magnetic Nanoparticles, Biosensors 2023, 13(10), 902.


32. Caliskan-Aydogan O1 and Alocilja EC3. 2023. A Review of Carbapenem Resistance in Enterobacterales and Its Detection Techniques. Microorganisms, 2023, 11(6), 1491.


33. Boodoo C1, Dester E1, David J1, Patel V1, Rabin KC, and Alocilja EC3. 2023. Multi-Probe Nano-Genomic Biosensor to Detect aureus from Magnetically-Extracted Food Samples, Biosensors, 2023, 13(6), 608, https://doi.org/10.3390/bios13060608.


34. Sharief S1, Caliskan-Aydogan O1, Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for PCR-less genomic detection of Salmonella from fresh produce, Food Control, Vol. 150, 109770.


35. Boodoo C1, Dester E1, Sharief S1, and Alocilja EC3. 2023. Influence of Biological and Environmental Factors in the Extraction and Concentration of Foodborne Pathogens using Glycan-Coated Magnetic Nanoparticles, Journal of Food Protection, 86(4):100066.


36. Sharief SA1, Caliskan-Aydogan O1, and Alocilja EC3. 2023. Carbohydrate-coated nanoparticles for point-of-use food contamination testing, Biosensors and Bioelectronics: X, 13 (2023), 100322, 9 pp.


37. Bhattarai RK1,3, Basnet HB, Dhakal IP, Alocilja E. 2023. Virulence genes of avian pathogenic Escherichia coli isolated from commercial chicken in Nepal, Comparative Immunology, Microbiology and Infectious Diseases, 95 (2023) 101961.


38. Caliskan-Aydogan O1, Sharief S1, and Alocilja EC3. 2023. Nanoparticle-Based Plasmonic Biosensor for the Unamplified Genomic Detection of Carbapenem-Resistant Bacteria, Diagnostics, 2023, 13(4), 656.


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41. Zhai, K., Sun, L., Nguyen, T., Lin, M. 2024. Facile synthesis of gold nanostars for duplex detection of pesticide residues in grapes using SERS. Food Sci. 89, 2512-2521.


42. Alsammarraie, F. K., Lin, M., Mustapha, A. 2023. Green synthesis of silver nanomaterials and evaluation of their antibacterial and antioxidant effectiveness in chicken meat. Food Biosci. 56, 103332.


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44. Wang, W., Yu, Z., Lin, M., Mustapha, A. 2023. Toxicity of silver nanoparticle incorporated-bacterial nanocellulose to human cells and intestinal bacteria.  J. Biol. Macromol. 241, 124705.


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46. M Liang, L Yuan, C Shao, X Zheng, Q Song, Z Gu, S Lu; 2023, Sequential Visual Sensing of H2O2 and GSH Based on Fluorescent Copper Nanoclusters Incorporated Eggshell Membrane, IEEE Sensors Journal (accepted)


47. Liang, T. Schaffer, A. Sobhan, M. Biesecker, Z. Yang, C. Han, J. Hu, A. Smirnova, Z. Gu, 2023, 3D Cu Pyramid Array Grown on Planar Cu Foil for Stable and Dendrite–Free Lithium Deposition, Materials Science Vol.29 No.4, 2023 (accepted)


48. Y Liang, W Ding, B Yao, F Zheng, A Smirnova, Z Gu, 2023, Mediating Lithium Plating/Stripping by Constructing 3D Au@ Cu Pentagonal Pyramid Array, Batteries 9 (5), 279


49. Yuanzhi Bian,* Debra L. Walter,* Chenming Zhang. Efficiency of interferon-γ in activating dendritic cells and its potential synergy with toll-like receptor agonists. Viruses (MDPI). 2023, 15, 1198. doi.org/10.3390/v15051198.

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11. Cavallaro, N., Moreira, G., Vanegas, D., Xiang, D., Datta, S., Gomes, C., & McLamore, E. (2024). A Listeria monocytogenes aptasensor for food safety monitoring in hydroponic cultivation. Discover Food, 4, 169.


12. Choi, S.-J., Lee, M., Liang, Y., Lin, E., Khanthaphixay, B., Leigh, P., Hwang, D., & Yoon, J.-Y. (2025). Machine learning classification of quorum sensing-induced bacterial aggregation using flow rate assays on paper chips. Biosensors and Bioelectronics, 284, 117563.


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19. Hajikhani, M., Kousheh, S., & Lin, M. (2024). Design of a novel SERS substrate by electrospinning for the detection of thiabendazole in soy-based foods. Food Chemistry, 436, 137703.


20. Hao, X., Wang, S, Fu, Y., Liu, Y., Shen, H., Jiang, L., McLamore, E., & Shen, Y. (2024) The WRKY46-MYC2 module is critical for E-2-hexenal induced anti-herbivore responses by promoting the accumulation of flavonoids. Plant Communications, 5(2), 100734.


21. Hayashi, Y., Fujii, T., Kim, S., Badylak, S., D’Amore, Mutsuga, M., & Wagner, W. (2024). Intervening to preserve function in ischemic cardiomyopathy with a porous hydrogel and extracellular matrix composite in a rat myocardial infarction model. Advanced Healthcare Materials, 14(2), e2402757.


22. Hayashi, Y., Kim, S., Fujii, T., Pedersen, D. D., Ozeki, T., Jiang, H., D’Amore, A., & Wagner, W. R. (2025). Placement of an elastic, biohybrid patch in a model of right heart failure with pulmonary artery banding. Frontiers in Bioengineering and Biotechnology, 12:1485740.


23. Hegde, A., Hajikhani, M., Snyder, J., Cheng, J., & Lin, M. (2025). Leveraging SERS and transformer models for simultaneous detection of multiple pesticides in fresh produce. ACS Applied Materials and Interfaces Journal, 17, 2018-2031.


24. Ibrahim, M., Seresht, H., Kum, C., Cho, J., Jin, G., An, S. H., Ye, S., Kim, S., Wagner, W., & Chun, Y. (2025). Novel laser-textured grooves extended to the sidewall edges of CoCr surfaces for rapid and selective endothelialization following coronary artery stenting. Biomaterials, 321, 123299.


25. Ibrahim, S., Gondhalekar, A., Ristroph, K., & Baributsa, D. (2025). Geranium oil nanoemulsion delivers more potent and persistent fumigant control of Callosobruchus maculatus in stored grain. Foods, 14(20), 3514.


26. Johnson, Z., Ellis, G., Pola, C., Banwart, C., McCormick, A., Miliao, G., Duong, D., Opare-Addo, J., Sista, H., Smith, E., Hu, H., Gomes, C., & Claussen, J. (2025). Enhanced laser-induced graphene microfluidic integrated sensors (LIGMIS) for on-site biomedical and environmental monitoring. Small, 21(32), e70035.


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28. Kohyama, K., Mittal, A., Alattar, A., Mantena, R., Cao, C., Kim, S., Wagner, W., Friedlander, R., & Nowicki, K. (2025). A murine model of carotid aneurysm formation. Journal of Visualized Experiments, 203, 3791/67872.


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30. Liang, W., Li, S., Liu, J., Cai, L., Zhang, W., & Yu, C. (2025). Additives change microbiota to promote humic acid formation in composting of vegetable wastes. Industrial Crops and Products, 232, 121307.


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35. Reed, J. D., Krueger, C. G., Alfaro-Viquez, E., Madrigal-Carballo, S., Saborio, H. U., & Gunasekaran, S. (2025). Tannin composite fibers. S. Patent 12,234,578.


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38. Sebteoui, K., Csabai, Z., Stanković, J., Baranov, V., Jovanović, B., & Milošević, D. (2025). Downsizing plastics, upsizing impact: How microplastic particle size affects Chironomus riparius bioturbation activity. Environmental Research, 270, 121055.


39. Sharma, B., Kohay, H., Sharma, S., Youngblood, M., Cochran, J., Unrine, J., Tsyusko, O., Lowry, G., & Giraldo, J. P. (2025). Controlled nitrogen release by hydroxyapatite nanomaterials enhances plant growth. ACS Nano, 19(3), 3906-3919.


40. Shobade, S., Nilsen-Hamilton, M., & Zabotina, O. (2025). Plant defense proteins: Recent discoveries and applications. Plants, 14(13), 2069.


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46. Walter, D., Ci, Q., Hu, H., DeHority, R., Hinckley, J., Bian, Y., Serpa, P., Southard, T., Werre, S., Pravetoni, M., Ehrich, M., & Zhang, C. (2025). Safety and toxicological evaluation of subunit keyhole limpet hemocyanin-loaded lipid-PLGA hybrid nanoparticles (sKLH-hNPs) as a nanocarrier for an opioid use disorder vaccine. International Journal of Toxicology, 44(5), 395-406.


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49. Yousaf, M., Madeo Cortarelli, L., Jebet, N., Unrine, J., Aich, N., Tsyusko, O., & Escobar, I. (2025). Characterization, performance, and toxicological assessment of polysulfone-sulfonated polyether ether ketone membranes for water separation applications. Membranes, 15(3), 87.


50. Zhai, K., Sun, L., Nguyen, T., & Lin, M. (2024). Facile synthesis of gold nanostars for duplex detection of pesticide residues in grapes using SERS. Journal of Food Science, 89(4), 2512-2521.


51. Zhang, W., Li, S., Zhang, P., Han, X., Xing, Y., & Yu, C. (2024). The colonization of synthetic microbial communities carried by bio-organic fertilizers in continuous cropping soil for potato plants. Microorganisms, 12(11), 2371.


52. Zribi, R., Johnson, Z., Ellis, G., Banwart, C., Opare-Addo, J., Hooe, S., Breger, J., Foti, A., Gucciardi, P., Smith, E., Gomes, C., Medintz, I., Neri, G., & Claussen, J. (2024). Molybdenum disulfide/diselenide-laser-induced graphene-glycine oxidase composite for electrochemical sensing of glyphosate. ACS Applied Materials & Interfaces, 17(1), 247-259.