12/09/2019

12/09/2019

Publications 

 

Zegpi, R.A.*, S. Gulley, V.L. van Santen, K.S. Joiner, H. Toro. Infectious bronchitis virus vaccination at day 1 of age further limits cross protection. Avian Diseases 63:302–309, 2019

 

Saiada, F.*, F. Eldemery*, R. A. Zegpi*, S. L. Gulley, A. Mishra, V. L. van Santen, and H. Toro. Early vaccination of chickens induces suboptimal immunity against infectious bronchitis virus. Avian Diseases 63:38–47, 2019

 

Saiada F.*, Gallardo RA, Shivaprasad HL, Corsiglia C, van Santen VL. Intestinal tropism of an IBV isolate not explained by spike protein binding specificity. Avian Dis. (accepted for publication Oct. 2019).

 

Zegpi R. A.*, K. S. Joiner, V. L. van Santen, H. Toro. Infectious bronchitis virus population structure defines immune response and protection. Avian Diseases (submitted Sept. 2019).

 

Zegpi R.A.*, L. He, Q. Yu, K. S. Joiner, V. L. van Santen, H. Toro. Limited protection conferred by recombinant Newcastle disease virus expressing infectious bronchitis spike protein. Avian Diseases (submitted Sept. 2019)

 

Zegpi R. A.*, C. Breedlove, S. Gulley, H. Toro. Infectious bronchitis virus immune responses in the Harderian gland upon initial vaccination. Avian Diseases (submitted Oct. 2019)

 

1. McCuen, M. E. Pitesky, A. P. da Silva, R. A. Gallardo, J. J. Buler, S. Acosta, A. Wilcox, R. F. Bond, S. L. Díaz-Muñoz. Linking remote sensing for targeted surveillance of Avian Influenza virus via tangential flow ultra-filtration and whole segment amplification in California wetlands. Transboundary and Emerging Diseases. Submitted.

 

1. Tracy, P. Saelao, Y. Wang, R. A. Gallardo, S. J. Lamont, J. Dekkers, T. Kelly, H. Zhou.

A bird’s eye view of the dynamics of the response to Newcastle Disease Virus (NDV) and heat stress in the chicken spleen: RNA-seq in two distinct genetic lines. 2019. Dev and Comp Immunol. Submitted.

 

A.P. Da Silva, K.A. Schat, R.A. Gallardo. Cytokine responses in tracheas from MHC congenic chicken lines with distinct susceptibilities to infectious bronchitis virus. 2019. Avian Dis. Submitted.

 

2019. Walugembe, J. Mushi, E. Amuzu-Aweh, G. Chiwanga, P. Msoffe, Y. Wang, P. Saelao, T. Kelly, R. Gallardo, H. Zhou, S. Lamont, A. Muhairwa, J. Dekkers. Genetic analyses of Tanzania local chicken ecotypes challenged with Newcastle disease virus. 2019. Genes. In press. https://www.mdpi.com/2073-4425/10/7/546/pdf

 

Egaña-Labrin, S. R. Hauck, A. Figueroa, S. Stoute, H.L. Shivaprasad, M. Crispo, C. Corsiglia, H. Zhou, C. Kern, B. Crossley,  R. Gallardo. 2019. Genotypic Characterization of Emerging Avian Reovirus Molecular Variants in California. Sci Rep Accepted.

 

Saelao P., Y. Wang, G. Chanthavixay, R. A. Gallardo, A. Wolc, J. M. Dekkers, S. J. Lamont, T. Kelly, H. Zhou. Genetics and genomic regions affecting response to Newcastle disease virus infection under heat stress on layer chickens. 2019. Genes. 10(1), 61. https://www.mdpi.com/2073-4425/10/1/61/htm

 

Da Silva A.P., R. Hauck, C. Kern, Y. Wang, H. Zhou, R.A. Gallardo. Effects of Chicken MHC Haplotype on Resistance to Distantly-Related Infectious Bronchitis Viruses. 2019. Avian Dis. 63:2, 310-317. https://www.aaapjournals.info/doi/pdf/10.1637/11989-103118-Reg.1 

 

Biswas S., A. Abdelnabi, M. Pitesky, R. A. Gallardo, P. Pandey. Thermal inactivation of Escherichia coli and Salmonella Typhimurium in poultry carcass and litter at thermophilic temperatures. 2018. Applied Poultry Science. https://doi.org/10.3382/japr/pfy072

 

Rowland K., A. Wolc, R. A. Gallardo, T. Kelly, H. Zhou, J. C. Dekkers, S. J. Lamont. Genetic analysis of a commercial egg laying line challenged with Newcastle disease virus. Frontiers in genetics. 2018; 9:326. https://www.frontiersin.org/articles/10.3389/fgene.2018.00326/full

 

Rowland K., P. Saelao, Y. Wang, J.E. Fulton, G.N. Liebe, A. M. Mc Carron, A. Wolc, R.A. Gallardo, T. Kelly, H. Zhou, J. Dekkers, S. J. Lamont. Association of candidate genes with response to heat and Newcastle disease virus. 2018. Genes. 9(11), 560.  https://doi.org/10.3390/genes9110560

 

Saelao P., Y. Wang, G. Chanthavixay, V. Yu, R. A. Gallardo, S. J. Lamont, J. M. Dekkers, T. Kelly, H. Zhou. Integrated proteomic and transcriptomic analysis of differential expression of chicken lung tissue in response to NDV infection during heat stress. 2018. Genes. 9(12), 579. https://doi.org/10.3390/genes9120579

 

Deist M.S., R.A. Gallardo, D.A. Bunn, T.R. Kelly, J.C.M. Dekkers, H. Zhou, S.J. Lamont. Novel Analysis of the Harderian Gland Transcriptome response to Newcastle Disease Virus in two Inbred Chicken Lines. Sci. Reports. 2018. 8:6558. DOI:10.1038/s41598-018-24830-0

 

Saelao P., Y. Wang. R. A. Gallardo, S. J. Lamont, J. M. Dekkers, T. Kelly, H. Zhou. Novel insights into the host immune response of chicken Harderian gland tissue, during Newcastle disease virus infection and heat treatment. 2018. BMC Vet. Res. 14:280.

 

Rowland K, Saelao P, Wang Y, Fulton JE, Liebe GN, McCarron AM, Wolc A, Gallardo RA, Kelly T, Zhou H, Dekkers JCM, Lamont SJ. Association of candidate genes with response to heat and Newcastle disease virus. Genes, 9(11): E560.

 

Aleuy O.A., M. Pitesky, R. A. Gallardo. Using Multinomial and Space -Time Permutation Models to Understand the Epidemiology of Infectious Bronchitis in California Between 2008 and 2012. Avian Dis. 2018. 62:2. 226-232. https://doi.org/10.1637/11788-122217-Reg.1

 

Aston, E.J., B.J Jordan, S.M. Williams, M. Garcia, M.W. Jackwood. Effect of pullet vaccination on development and longevity of immunity. Viruses 11: 135, doi:10.33490, 2019.

 

Aston, E.J., M.W. Jackwood, R.M. Gogal Jr., D. J. Hurley, B.D. Fairchild, D.A. Hilt, S. Cheng, L.R. Tensa, M. Garcia and B.J Jordan. Ambient ammonia does not inhibit the immune response to infectious bronchitis virus vaccination and protection from homologous challenge in broiler chickens. Veterinary Immunology and Immunopathology 217: 109932, 2019.

 

Beltrán, G., D. J. Hurley, R. M. Gogal Jr., S. Sharif, L. R Read, S. M. Williams, C. F. Jerry, D. A Maekawa, and M. García. Immune Responses in the Eye-Associated Lymphoid Tissues of Chickens after Ocular Inoculation with Vaccine and Virulent Strains of the Respiratory Infectious Laryngotracheitis Virus (ILTV). Viruses 11 (77) 635,  https://doi.org/10.3390/v11070635. 2019.

 

Dos Santos, Marianne and Naola Ferguson-Noel. Application of Mycoplasma gallisepticum F Vaccine Strain Specific PCR Protocols to Vaccine Trials.21st World Veterinary Poultry Association Congress (WVPAC 2019), Bangkok Thailand, September 16^th – 20^th , 2019.

 

Dunn, J. R., K. M. Dimitrov, P. J. Miller, M. García, A. Brown, A. Hartman. Evaluation of protective efficacy when combining HVT vector vaccines. Avian Diseases. 63:75-83. 2019

 

Ehsan, Mohammadreza, Marianne Dos Santos, Amanda Olivier and Naola Ferguson-Noel. The Application of Real time PCR protocols to Differentiate Mycoplasma synoviae Vaccine and Field Strains.American Veterinary Medical Association (AVMA) Annual Convention, Washington, DC. August 2^nd -6^th, 2019.

 

García, M. and G. Zavala. Commercial vaccines and vaccination strategies against infectious laryngotracheitis (ILT): What we have learned and knowledge gaps that remain. Avian Diseases. Avian Dis. 63:325-334. 2019

 

Maekawa, A., G. Beltrán, S. M. Riblet, and M.García. Protection Efficacy of a Recombinant Herpesvirus of Turkey Vaccine Against Infectious Laryngotracheitis Virus Administered In Ovo to Broilers at Three Standardized Doses. Avian Dis. 63: 351-358. 2019.

 

Maekawa, D., S. M. Riblet, L. Newman, R. Koopman, T. Barbosa & M. García. valuation of vaccination against infectious laryngotracheitis (ILT) with recombinant herpesvirus of turkey (rHVT-LT) and chicken embryo origin (CEO) vaccines applied alone or in combination. Avian Pathology. https://doi.org/10.1080/03079457.2019.1644449. 2019.

 

Marcano, Valerie C,  Susan M Williams, Maricarmen García, Marianne Dos Santos, Naola Ferguson-Noel. Sinus Lesion Evaluation of SPF chickens co-infected with Mycoplasma synoviae and Infectious Bronchitis.. 21st World Veterinary Poultry Association Congress (WVPAC 2019), Bangkok Thailand, September 16^th – 20^th , 2019. 

 

Mo, J., M. Angelichio, L. Gow, V. Leathers, M.W. Jackwood. Validation of specific quantitative real-time RT-PCR assay panel for Infectious Bronchitis using synthetic DNA standards and clinical specimens. Accepted: J. Virological Methods Nov. 2019.

 

Mo, J., M. Angelichio, L. Gow, V. Leathers, M.W. Jackwood. Development of specific quantitative real-time PCR assay panels for Infectious Laryngotracheitis, Newcastle Disease and Avian Metapneumovirus using synthetic DNA standards, internal positive controls and clinical specimens. Submitted: J. Virological Methods 2019.

 

Palomino-Tapia, V. A., G. Zavala, S, Cheng, and M. García. Long term protection against a virulent field isolate of Infectious laryngotracheitis virus induced by inactivated, recombinant and modified live virus vaccines in commercial layers.14:1-12. doi: 10.1080/03079457.2019.1568389. 2019.

 

Spatz, S. J., M. García, S. M. Riblet, T. A. Ross, J. D.Volkening, T. L. Taylor, T. Kim and C. L. Afonso. MinION sequencing to genotype US strains of Infectious laryngotracheitis virus. Feb 5:1-43. doi: 10.1080/03079457.2019.1579298. 2019

Ngunjiri J, Taylor K, Abundo M, Jang H, Elaish M, Mahesh C, Ghorbani A, Wijeratne S, Weber B, Johnson TJ, Lee C. Farm stage, bird age and body site dominantly affect the quantity, taxonomic composition, and dynamics of respiratory and gut microbiota of commercial layer chickens. Applied and Environmental Microbiology 85: e03137-18. 2019.

 

Abstracts/Posters/Professional Presentations

 

Farjana Saiada, Vicky L. van Santen, H.L. Shivaprasad, Charles Corsiglia, Rodrigo A. Gallardo (2019). Intestinal tropism of an IBV isolate is not explained by spike protein binding specificity

AAAP meeting, Washington, D.C., Aug 2-6.

 

Toro, H., R.A. Zegpi, V.L. van Santen (2019). Immune Responses Induced in Chickens by a Genetically More Homogeneous Infectious Bronchitis Virus Vaccine (2019). AAAP meeting, Washington, D.C. Aug 2-6.

 

Ramon A. Zegpi, C. Breedlove, Steve Gulley, Q. Yu, Vicky van Santen, Haroldo Toro (2019). Protection Conferred by IBV S-ectodomain Expressed from Recombinant NDV LaSota. AAAP meeting, Washington, D.C. Aug 2-6.

 

Ramon A. Zegpi, Vicky van Santen, Haroldo Toro (2019). Optimization of Avidity Determination using Logistical Regression: IBV S1-specific Antibodies. AAAP meeting, Washington, D.C. Aug 2-6.

 

Chanthavixay, K., C. Kern, Y. Wang, Saelao, P., R. Gallardo, S.J. Lamont. N. Chubb, G. Rincon, Zhou, H. 2019. Differential H3K27ac peaks within bursa tissue of two inbred chicken lines under NDV infection and heat stress. 37th Conference for the International Society of Animal Genetics, Lleida, Spain.

 

Walugembe, M.,  E.N. Amuzu-Aweh, B.B. Kayang, A.P. Muhairwa, P.K. Botchway, J.R. Mushi, G. Honorati, A. Naazie, G. Aning, P. Msoffe, Y. Wang, P. Saelao, T.R. Kelly, R.A. Gallardo, H. Zhou, S.J. Lamont and J.C.M. Dekkers. 2019. Genetic Analyses of Ghana and Tanzania Local Chicken Ecotypes Challenged with Newcastle Disease Virus. Plant & Animal Genome XXVII, San Diego, CA.

 

Kim, T. H., C. Kern, H. Zhou. 2019. Transcription Factor IRF7 Knockout Revealed Selective Modulation of Type I Interferon Response to Avian Influenza Virus Infection in Chickens. Plant & Animal Genome XXVII, San Diego, CA.

 

Zhou, H. S.J. Lamont, J.C.M. Dekkers, R. Gallardo, T.R. Kelly, B.B. Kayang, A. Naazie, G. Aning, P. Msoffe and A.P. Muhairwa. 2019. Improving Food Security in Africa by Enhancing Resistance to Newcastle Disease and Heat Stress in Chickens (Genomics to Improve Poultry Innovation Lab). Plant & Animal Genome XXVII, San Diego, CA.

 

Wang, Y.  Saelao, P., K. Chanthavixay, K. Rowland. T.R. Kelly, J.M. Dekkers, A. Wolc. R. Gallardo, S.J. Lamont. Zhou, H. 2019. Association Analysis with 600K SNP Array Identifies Candidate Genes for Heat Stress Response in Hy-Line Brown Chicks. Plant & Animal Genome XXVII, San Diego, CA.

 

2019. Chanthavixay, C. Kern, Y. Wang, Saelao, P., R. Gallardo, S.J. Lamont. N. Chubb, G. Rincon, Zhou, H. 2019. Predicting Chromatin States to Identify Distinct Active Enhancers Within Bursa Tissue of Two Inbred Chicken Lines Under NDV Infection and Heat Stress. Plant & Animal Genome XXVII, San Diego, CA.

 

2019. Chanthavixay, C. Kern, Y. Wang, Saelao, P., R. Gallardo, S.J. Lamont. N. Chubb, G. Rincon, Zhou, H. 2019. Differential H3K27ac peaks within bursa tissue of two inbred chicken lines under NDV infection and heat stress. Keystone conference in Transcription and RNA Regulation in Inflammation and Immunity, Lake Tahoe, CA

 

Kim, T. H., C. Kern, H. Zhou. 2019. Transcription Factor IRF7 Knockout Revealed Selective Modulation of Type I Interferon Response to Avian Influenza Virus Infection in Chickens. Plant & Animal Genome XXVII, San Diego, CA.

 

R.A. Gallardo, A.P. Da Silva, H. Zhou, C. Kern. (2018). Tracheal Immune Pathways and its Virome in Chickens Challenged with Different IBV Genotypes. American Veterinary Medical Association / American Association of Avian Pathologists (AVMA/AAAP) Annual Meeting, Denver, CO.

 

R.A. Gallardo, A.P. Da Silva, S. Egaña, S. Stoute, A. Mete, C, K. Clothier, C. Corsiglia, G. Cutler, C. Kern, H. Zhou. Coryza Outbreaks in Chickens: Persistence, Molecular and Pathogenic Characterization. (2018). American Veterinary Medical Association / American Association of Avian Pathologists (AVMA/AAAP) Annual Meeting, Denver, CO.

 

1. Egaña, H. Roh, H. Zhou, C. Corsiglia, B. Crossley, R.A. Gallardo. Attempts Towards a Better Classification of Avian Reovirus Variants. (2018). 67th Western Poultry Disease Conference (WPDC) Salt Lake City, UT.

 

R.A. Gallardo, C. Corsiglia, S. Stoute, A. Mete, A.P. Da Silva, K. Clothier, C. Kern, H. Zhou. (2018). Understanding Coryza Outbreaks, Persistence and Molecular Biology. 67th Western Poultry Disease Conference (WPDC) Salt Lake City, UT.

 

1. A. Gallardo, A. P. da Silva, K.A. Schat, R. Hauck, Y. Wang, H. Zhou (2018). Understanding Immune Responses Against Infectious Bronchitis Virus Challenges Using Resistant and Susceptible Chicken Lines. International Avian Respiratory Disease Conference (IARDC). Athens, GA.

 

Funding

 

1. H. Zhou (PI), R. Gallardo (Co-PI), T. Kelly, S. J. Lamont, J. Dekkers “Improving food security in Africa by enhancing resistance to disease and heat in chickens; Feed the future innovation lab for genomics to improve poultry”, USAID AID-OAA-A-13-00080, $4.9M (2019 to 2023).

 

1. R. Gallardo (PI), Virulent Newcastle disease virus outreach effort in Southern California. Department of Food and Agriculture (CDFA) $150,000 (2019-2020).

 

3. Lee CW (PI). Serological surveillance of IBDV antibodies in turkeys in the US. (12/28/2018 - 01/31/2021). National Turkey Federation.

 

4. Rajashekara G (PI). Accelerator Award Grant. Novel small molecule (SM) growth and virulence (quorum sensing, QS) inhibitors for control of colibacillosis in poultry. Technology Commercialization Office (TCO), The Ohio State University and Ohio State Innovation Foundation.

 

5. Jarosinski, K.W. (PI) and Grose, C. (Co-PI). The role of the conserved alphaherpesvirus glycoprotein C in host-to-host transmission. NIH/USDA-NIFA-AFRI #2019-67015-29262; (2019-2024), $1,624,996.

 

6. Jarosinski, K.W. (PI). Determining the role of Marek’s disease virus UL13 protein kinase in horizontal transmission. USDA-NIFA-AFRI #2016-67015-26777; (2016-2020), $499,838.

 

7. Jarosinski, K.W. (PI). Determining viral factors important for generation of cell-free Marek’s disease vaccines. USDA-NIFA-AFRI #2013-67015-26787; (2013-2019), $499,807.

 

 

 

 

 

 

 

01/04/2021

01/26/2022

Publications (Underlined references denote collaboration between stations and names in bold denote members of the NC1180 Group)

 

Abundo MC, Ngunjiri JM, Taylor KJM, Ji H, Ghorbani A, KC M, Weber BP, Johnson TJ, Lee CW. Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types. PLoS One. 16(1): e0241732. 2021. [Collaboration between University of Minnesota and the Ohio State University]

 

Amro Hashish, Avanti Sinha, Amr Mekky, Yuko Sato, Nubia R. Macedo and Mohamed El-Gazzar. Development and Validation of Two Diagnostic Real-Time PCR (TaqMan) Assays for the Detection of Bordetella avium from Clinical Samples and Comparison to the Currently Available Real-Time TaqMan PCR Assay. Microorganisms 2021, 9, 2232. https://doi.org/10.3390/microorganisms9112232.

 

Aseno S., J. Ding, A. Kalluri2, Z. Helal, C.V. Kumar and M. I. Khan. Fluodot Nanoparticle - A Promising Novel Delivery System for Veterinary Vaccine. International Journal of Nanoparticle Research, August, 2020;

 

Aston E., A. Nayaran, S. Egaña, M. Wallach, R.A. Gallardo. Hyperimmunized chickens produce neutralizing antibodies against SARS-CoV-2. 2021. Scientific Reports. Submitted. https://www.researchsquare.com/article/rs-515320/v1

 

Aston E., Y. Wang, K. Tracy, R.A. Gallardo, S. J. Lamont, H. Zhou. Comparison of celular immune responses to avian influenza in two genetically distinct, highly inbred chickens. Vet. Immunol. Immunopathol. 2021. 235:110233. https://www.sciencedirect.com/science/article/pii/S0165242721000519

 

Bertran, K., Kassa, A., Criado, M. F., Nuñez, I. A., Lee, D.-H., Killmaster, L., Sá e Silva, M., Ross, T. M., Mebatsion, T., Pritchard, N., & Swayne, D. E. (2021). Efficacy of recombinant Marek’s disease virus vectored vaccines with computationally optimized broadly reactive antigen (COBRA) hemagglutinin insert against genetically diverse H5 high pathogenicity avian influenza viruses. Vaccine, 39(14), 1933–1942. https://doi.org/10.1016/j.vaccine.2021.02.075

 

Beyene T. J., C. W. Lee, G. Lossie, A. G. Arruda. Poultry professionals’ perception of participation in voluntary disease mapping and monitoring programs in the United States: a cluster analysis. Avian Diseases. 65(1): 67-76. https://doi.org/10.1637/aviandiseases-D-20-00078. [Collaboration between the Ohio State University and Iowa State University]

 

Booney, P. J. Bonney, Sasidhar Malladi, Amos Ssematimba, Erica Spackman, Mia Kim Torchetti, Marie Culhane, & Carol J. Cardona. (2021). Estimating epidemiological parameters using diagnostic testing data from low pathogenicity avian influenza infected turkey houses. Scientific Reports, 11(1), 1–10. https://doi.org/10.1038/s41598-021-81254-z

 

Campler  M. R., T-Y. Cheng, C. Hofacre, C-W. Lee, G. Lossie, M. El-Gazzar, A. G. Arruda. Spatial factors influencing infectious bronchitis virus (IBV) antibody titers at slaughter in broiler chickens. In preparation.

 

Chang, R., Pandey, P., Li, Y., Venkitasamy, C., Chen, Z., Gallardo, R., Weimer, B. and Jay-Russell, M., 2020. Assessment of gaseous ozone treatment on Salmonella Typhimurium and Escherichia coli O157: H7 reductions in poultry litter. Waste Management, 117, pp.42-47.

 

 

Chrzastek, K., Segovia, K., Torchetti, M., Killian, M. L., Pantin-Jackwood, M., & Kapczynski, D. R. (2021). Virus Adaptation Following Experimental Infection of Chickens with a Domestic Duck Low Pathogenic Avian Influenza Isolate from the 2017 USA H7N9 Outbreak Identifies Polymorphic Mutations in Multiple Gene Segments. VIRUSES-BASEL, 13(6), 1166. https://doi.org/10.3390/v13061166

 

 Da Silva A.P., C. Giroux, H. S. Sellers, A. Mendoza-Reilley, S. Stoute and R.A. Gallardo. Characterization of an IBV isolated from commercial layers suffering from false layer syndrome. 2021. Avian Diseases. https://doi.org/10.1637/aviandiseases-D-21-00037

 

Da Silva A.P., E. Aston, G. Chiwanga, A. Birakos, A. Muhairwa, B. Kayang, T. Kelly, H. Zhou, R.A. Gallardo. Molecular characterization of Newcastle disease viruses isolated from chickens in Tanzania and Ghana. Viruses. 2020. 12(9), 916. https://doi.org/10.3390/v12090916

 

Da Silva A.P. and R.A. Gallardo. Review: The Chicken MHC: Insights on genetic resistance, immunity and inflammation following infectious bronchitis virus infections. Viruses (2020) Accepted https://www.mdpi.com/2076-393X/8/4/637 

 

Da Silva Ana P., Robin Gilbert, Matilde Alfonso, Alan Conley, Kelli Jones, Philip A. Stayer, Frederic J. Hoerr, Rodrigo A. Gallardo. Testicular atrophy and epididymitis-orchitis associated with infectious bronchitis virus in broiler breeder roosters. Avian Diseases. Submitted.

 

Da Silva A.P., R. Hauck, S.R.C Nociti, C. Kern, H. L. Shivaprasad, H. Zhou, and R.A. Gallardo. Molecular biology and pathological process of an infectious bronchitis virus with enteric tropism in commercial broilers. Viruses, Respiratory Diseases Special Edition. 2021. Viruses. https://www.mdpi.com/1999-4915/13/8/1477#

 

Egaña-Labrin S., C. Jerry, H. J. Roh, A. P. da Silva, C. Corsiglia, B. Crossley, D. Rejmanek, R. A. Gallardo. Avian Reoviruses of the Same Genotype Induce Different Pathology in Chickens. Avian Diseases. Accepted for publication.

 

Ferreira, H. L., Miller, P. J., Suarez, D. L., & Meurens, F. (2021). Protection against Different Genotypes of Newcastle Disease Viruses (NDV) Afforded by an Adenovirus-Vectored Fusion Protein and Live NDV Vaccines in Chickens. Vaccines, 9(2), 182.

 

Gallardo R.A. and A.P. Da Silva. MHC B Complex Genetic Resistance amd Immune Responses to Infectious Bronchitis Virus in Chickens. Avian Diseases. Invited review. Accepted.

 

Gonzales-Viera O., F. Carvallo-Chaigneau, E. Blair, D. Rejmanek, O. Erdogan-Bamac, K. Sverlow, A. Figueroa, R.A. Gallardo, A. Mete. Infectious bronchitis virus prevalence, characterization and strain identification in California backyard chickens. Avian Dis. (2021) DOI: 10.1637/aviandiseases-d-20-00113 PMID: 33400768 

 

Goraichuk, I. V., Davis, J. F., Kulkarni, A. B., Afonso, C. L., & Suarez, D. L. (2021). A 24-year-old sample contributes the complete genome sequence of fowl Aviadenovirus D from the United States. Microbiology Resource Announcements, 10(1). https://doi.org/https://mra.asm.org/content/10/1/e01211-20

 

Goraichuk, I. V., Davis, J. F., Parris, D. J., Kariithi, H. M., Afonso, C. L., & Suarez, D. L. (2021). Near-Complete Genome Sequences of Five Siciniviruses from North America. Microbiology Resource Announcements, 10(19). https://doi.org/10.1128/MRA.00364-21

 

Goraichuk, I. V., Davis, J. F., Kulkarni, A. B., Afonso, C. L., & Suarez, D. L. (2021, April 15). Whole-genome sequence of avian coronavirus from a 15-year-old sample confirms evidence of ga08-like strain circulation 4 years prior to its first reported outbreak. Microbiology Resource Announcements. Retrieved January 25, 2022, from https://journals.asm.org/doi/10.1128/MRA.01460-20

 

Hein, R., R. Koopman, M.García, N. Armour,  J. R. Dunn, T. Barbosa & A. Martinez. Review of Poultry Recombinant Vector Vaccines. Avian Dis.65: (3):438-452. doi: 10.1637/0005-2086-65.3.438. 2021.

 

Kariithi, H. M., Ferreira, H. L., Welch, C. N., Ateya, L. O., Apopo, A. A., Zoller, R., Volkening, J. D., Williams-Coplin, D., Parris, D. J., Olivier, T. L., Goldenberg, D., Binepal, Y. S., Hernandez, S. M., Afonso, C. L., & Suarez, D. L. (2021). Surveillance and Genetic Characterization of Virulent Newcastle Disease Virus Subgenotype V.3 in Indigenous Chickens from Backyard Poultry Farms and Live Bird Markets in Kenya. Viruses, 13(1). https://doi.org/10.3390/v13010103

 

Kathayat D, Closs G Jr, Helmy YA, Lokesh D, Ranjit S, Rajashekara G. Peptides affecting outer membrane lipid asymmetry (MlaA-OmpC/F) system reduce avian pathogenic Escherichia coli (APEC) colonization in chickens. Appl Environ Microbiol. 2021 Jun 16:AEM0056721. doi: 10.1128/AEM.00567-21. Online ahead of print.PMID: 34132592.

 

Kathayat, D.; Lokesh, D.; Ranjit, S.; Rajashekara, G. Avian Pathogenic Escherichia coli (APEC): An Overview of Virulence and Pathogenesis Factors, Zoonotic Potential, and Control Strategies. Pathogens 2021, 10, 467. https://doi.org/10.3390/pathogens1004046.

 

Kathayat D, Closs G Jr, Helmy YA, Deblais L, Srivastava V, Rajashekara G. In Vitro and In Vivo Evaluation of Lacticaseibacillus rhamnosus GG and Bifidobacterium lactis Bb12 Against Avian Pathogenic Escherichia coli and Identification of Novel Probiotic-Derived Bioactive Peptides. Probiotics Antimicrob Proteins. 2021 Aug 30. doi: 10.1007/s12602-021-09840-1. PMID: 34458959.

 

Khalid Z.*, L. He, Q. Yu, C. Breedlove, K. Joiner, H. Toro (2021). Enhanced Protection by Recombinant Newcastle Disease Virus Expressing Infectious Bronchitis Virus Spike-Ectodomain and Chicken Granulocyte-Macrophage Colony-Stimulating Factor. Avian Diseases 65: 364-372.

 

Kwon Junghoon, Criado, M. F., Killmaster, L., Ali, M. Z., Mohammad Giasuddin, Samad, M. A., Karim, M. R., Brum, E., Hasan, M. Z., Lee Donghun, Spackman, E., & Swayne, D. E. (2021). Efficacy of two vaccines against recent emergent antigenic variants of clade 2.3.2.1a highly pathogenic avian influenza viruses in Bangladesh. Vaccine, 39(21), 2824–2832. https://doi.org/https://www.sciencedirect.com/science/article/pii/S0264410X2100459X

 

Lee, D.-H., Killian, M. L., Deliberto, T. J., Wan, X.-F., Lei, L., Swayne, D. E., & Torchetti, M. K. (2021). H7N1 Low Pathogenicity Avian Influenza Viruses in Poultry in the United States During 2018. Avian Diseases, 65(1), 59–62.

 

Lockyear O.*, C. Breedlove, K. Joiner, H. Toro (2021). Distribution of Resistance in a Naïve Chicken Population to Infectious Bronchitis Virus. Avian Diseases (submitted for publication October 2021).

 

Maekawa, D., S. M. Riblet, P. Whang, D. J. Hurley, & M. García. Activation of Cytotoxic Lymphocytes and Presence of Regulatory T Cells in the Trachea of Non-vaccinated and Vaccinated Chickens as a Recall to an Infectious Laryngotracheitis Virus (ILTV) Challenge. Vaccines, 9, https://doi.org/10.3390/vaccines9080865. 2021

 

Maekawa, D., S. M. Riblet, P. Whang, I. Alvarado, & M. García. A Cell Line Adapted Infectious Laryngotracheitis Virus Strain (BDORFC) for in ovo and Hatchery Spray Vaccination Alone or in Combination with a Recombinant HVT-LT Vaccine. Avian Dis. 65:500-507. 2021.

 

Maekawa, D., P. Whang, S. M. Riblet, D. J. Hurley, James S. Guy & M. García. Assessing the infiltration of immune cells in the upper trachea mucosa after infectious laryngotracheitis virus (ILTV) vaccination and challenge. 50; 6: 540-556. https://doi.org/10.1080/03079457.2021.1989379. 2021.

 

Mahesh, K., Ngunjiri, J. M., Ghorbani, A., Abundo, M. E. C., Wilbanks, K. Q., Lee, K., & Lee, C.-W. (2021). Assessment of TLR3 and MDA5-Mediated Immune Responses Using Knockout Quail Fibroblast Cells. Avian Diseases, 65(3), 419–428.

 

Montine P., T.R. Kelly, S. Stoute, A.P. da Silva, B. Crossley, C. Corsiglia, H.L. Shivaprasad, and R.A. Gallardo. Infectious Bronchitis Virus Surveillance in Broilers in California (2012-2020). Avian Diseases. Submitted.

 

Mulholland, K.A., M.G. Robinson, S.J. Keeler, T.J. Johnson, B.P. Youmans and C.L. Keeler, Jr. (2021) Metagenomic analysis of the respiratory microbiome of a healthy broiler flock from hatching to processing. Microorganisms, 9, 721. https://doi.org/10.3390/microorganisms9040721 (UD, U Minn.)

 

Mushi J., G. H. Chiwanga, E. Mollel, M. Walugembe, R. A. Max, P. Msoffe, R. A. Gallardo, T. Kelly, S. Lamont, J. Dekkers, H. Zhou, A. Muhairwa. Antibody response, viral load, viral clearance and growth rate in Tanzanian free-range local chickens infected with lentogenic Newcastle disease virus. 2021. Journal of Veterinary Medicine and Animal Health. In Press. 

 

Ngunjiri JM, Taylor KJM, Ji H, Abundo MC, Ghorbani A, KC M, Lee CW. Influenza A virus infection in turkeys induces respiratory and enteric bacterial dysbiosis correlating with cytokine gene expression. PeerJ. 2021 Jul 22;9:e11806.

 

Reinoso-Pérez María Teresa, Alexander A.  Levitskiy, Keila V. Dhondt Edan Tulman, Steven J. Geary and André A. Dhondt. (Changes in tissue tropism of Mycoplasma gallisepticum following host jump. Journal of Wildlife Diseases (in review) [collaboration with UCONN).

 

Saelao P., Y. Wang, G. Chanthavixay, V. Yu, R.A. Gallardo, J. Dekkers, S. J. Lamont, T. Kelly, H. Zhou. Distinct transcriptomic response to Newcastle disease virus infection during heat stress in chicken tracheal epitelial tissue. 2021. Scientific Reports. 11:7450. https://www.nature.com/articles/s41598-021-86795-x.pdf  

 

Suarez, D. L., Pantin-Jackwood, M. J., Swayne, D. E., Lee, S. A., DeBlois, S. M., & Spackman, E. (2020). Lack of Susceptibility to SARS-CoV-2 and MERS-CoV in Poultry. Emerging Infectious Diseases, 26(12), 3074–3076. https://doi.org/10.3201/eid2612.202989

 

Toro H. (2021). Global Control of Infectious Bronchitis Requires Replacing Live Attenuated Vaccines by Alternative Technologies. Avian Diseases, 65: (in press).

 

Vega-Rodriguez, W., H. Xu, N. Ponnuraj, H. Akbar, T. Kim, K.W. Jarosinski. 2021. The requirement of glycoprotein C (gC) for interindividual spread is a conserved function of gC for avian herpesviruses. Sci Rep 11(1):7753. https://doi.org/10.1038/s41598-021-87400-x

 

Vega-Rodriguez W., N. Ponnuraj, M. García, K.W. Jarosinski. 2021. The requirement of glycoprotein C for interindividual spread is functionally conserved within the Alphaherpesvirus genus (Mardivirus), but not the host (Gallid). Viruses 13(8):1419. https://doi.org/10.3390/v13081419

 

Youk, S.-S., Leyson, C. M., Seibert, B. A., Jadhao, S., Perez, D. R., Suarez, D. L., & Pantin-Jackwood, M. J. (2021). Mutations in PB1, NP, HA, and NA Contribute to Increased Virus Fitness of H5N2 Highly Pathogenic Avian Influenza Virus Clade 2.3.4.4 in Chickens. JOURNAL OF VIROLOGY, 95(5), e01675-20. https://doi.org/10.1128/JVI.01675-20

 

Youk, S., Cho, A. Y., Lee, D.-H., Jeong, S., Kim, Y., Lee, S., Kim, T.-H., Pantin-Jackwood, M. J., & Song, C.-S. (2021). Detection of newly introduced Y280-lineage H9N2 avian influenza viruses in live bird markets in Korea. TRANSBOUNDARY AND EMERGING DISEASES. https://doi.org/10.1111/tbed.14014

 

 

 

 

 

 

 

12/21/2022

10/11/2023

10/04/2024

*** Indicates collaboration NC1180 members.

 

Abd-Elsalam RM, Najimudeen SM, Mahmoud ME, Hassan MSH, Gallardo RA, Abdul-Careem MF. Differential Impact of Massachusetts, Canadian 4/91, and California (Cal) 1737 Genotypes of Infectious Bronchitis Virus Infection on Lymphoid Organs of Chickens. Viruses. 2024. https://doi.org/10.3390/v16030326

 

Bakre A, Kariithi HM, Suarez DL. Alternative probe hybridization buffers for target RNA depletion and viral sequence recovery in NGS for poultry samples. J Virol Methods. 2023. https://doi.org/10.1016/j.jviromet.2023.114793

 

Buter R, Feberwee A, de Wit S, Heuvelink A, da Silva A, Gallardo RA, Soriano Vargas E, Swanepoel S, Jung A, Tödte M, Dijkman R. Molecular characterization of the HMTp210 gene of Avibacterium paragallinarum and the proposition of a new genotyping method as alternative for classical serotyping. Avian Pathol. 2023. https://doi.org/10.1080/03079457.2023.2239178

 

***Campler MR, Cheng TY, Lee CW, Hofacre CL, Lossie G, Silva GS, El-Gazzar MM, Arruda AG. Investigating the uses of machine learning algorithms to inform risk factor analyses: The example of avian infectious bronchitis virus (IBV) in broiler chickens. Res Vet Sci. 2024. https://doi.org10.1016/j.rvsc

 

***Campler MR, Hashish A, Ghanem M, El-Gazzar MM, Arruda AG. Space-Time Patterns of Poultry Pathogens in the USA: A Case Study of Ornithobacterium rhinotracheale and Pasteurella multocida in Turkey Populations. Pathogens. 2023. https://doi.org/10.3390/pathogens12081004

 

***Chaves M, Hashish A, Osemeke O, Sato Y, Suarez DL, El-Gazzar M. Evaluation of Commercial RNA Extraction Protocols for Avian Influenza Virus Using Nanopore Metagenomic Sequencing. Viruses. 2024. https://doi.org/10.3390/v16091429

 

Cuadrado C, Breedlove C, van Santen E, Joiner KS, van Santen VL, Toro H. Protection Against Infectious Bronchitis Virus Vaccine Recombinants and Chicken-Selected Vaccine Subpopulations. Avian Dis. 2024. https://doi.org/10.1637/aviandiseases-D-23-00064

 

Davison S, Tracy L, Kelly DJ, Bender SJ, Pierdon MK, Mills J, Barnhart DJ, Licciardello S, Mohamed Anis EA, Wallner-Pendleton E, Dunn P, Robinson C, Ladman B, Kuchipudi SV. Avian Dis. 2024. https://doi.org/10.1637/aviandiseases-D-23-00073

 

Egana-Labrin S, Broadbent AJ. Avian reovirus: a furious and fast evolving pathogen. J Med Microbiol. 2023 https://doi.org/10.1099/jmm.0.001761

 

Espejo R, Breedlove C, da Silva LF, Joiner K, Toro H. Cross-Protection Conferred by Combined Vaccine Containing Infectious Bronchitis Virus Attenuated Massachusetts and Recombinant LaSota Virus Expressing Arkansas Spike. Avian Dis. 2023. https://doi.org/10.1637/aviandiseases-D-23-00031

 

Espejo R, Breedlove C, Toro H. Immune Responses in the Harderian Gland after Newcastle Disease Vaccination in Chickens with Maternal Antibodies. Avian Dis. 2024. https://doi.org/10.1637/aviandiseases-D-24-00007

 

Garcia G Jr, Irudayam JI, Jeyachandran AV, Dubey S, Chang C, Castillo Cario S, Price N, Arumugam S, Marquez AL, Shah A, Fanaei A, Chakravarty N, Joshi S, Sinha S, French SW, Parcells MS, Ramaiah A, Arumugaswami V. Innate immune pathway modulator screen identifies STING pathway activation as a strategy to inhibit multiple families of arbo and respiratory viruses. Cell Rep Med. 2023. https://doi.org/10.1016/j.xcrm

 

***Ghanem M, Hashish A, Chundru D, El-Gazzar M. Complete Genome Sequence and Annotation of Malacoplasma iowae Type Strain 695, Generated Using PacBio Sequencing. Microbiol Resour Announc. 2023. https://doi.org//10.1128/mra.00490-22

 

***Ghanem M, Hashish A, Chundru D, El-Gazzar M. Complete Genome Sequence and Annotation of Malacoplasma iowae Type Strain 695, Generated Using PacBio Sequencing. Microbiol Resour Announc. 2023. https://doi.org/10.1128/mra.00490-22

 

Hardy M, Williams C, Ladman B, Pitesky M, Overton C, Casazza M, Matchett E, Prosser D, Buler J. Examining inter-regional and intra-seasonal Differences in Wintering Waterfowl Habitat Use Among Pacific and Atlantic Flyways and its Application for Food Security in the U.S. Authorea. 2024. https://doi.org/10.22541/au.171032186.69221006/v1

 

Hashish A, Chaves M, Macedo NR, Sato Y, Schmitz-Esser S, Wilson D, El-Gazzar M. Complete genome sequences generated using hybrid Nanopore-Illumina assembly of two non-typical Avibacterium paragallinarum strains isolated from clinically normal chicken flocks. Microbiol Resour Announc. 2023. https://doi.org/10.1128/MRA.00128-23

 

Hashish A, Johnson TJ, Chundru D, Williams ML, Sato Y, Macedo NR, Clessin A, Gantelet H, Bost C, Tornos J, Gamble A, LeCount KJ, Ghanem M, Boulinier T, El-Gazzar M. Complete Genome Sequences of Two Pasteurella multocida Isolates from Seabirds. Microbiol Resour Announc. 2023. https://doi.org/10.1128/mra.01365-22

 

 

Hashish A, Johnson TJ, Smith E, Chundru D, Williams ML, Macedo NR, Sato Y, Ghanem M, El-Gazzar M. Complete Genome Sequences of Three Ornithobacterium rhinotracheale Strains from Avian Sources, Using Hybrid Nanopore-Illumina Assembly. Microbiol Resour Announc. 2023. https://doi.org/10.1128/mra.01059-22

 

Hashish A, McKeen L, Sato Y, El-Gazzar M. Development and Evaluation of Mycoplasma gallisepticum Challenge Model in Layer Pullets. Avian Dis. 2024. https://doi.org//10.1637/aviandiseases-D-23-00045

 

Helmy YA, El-Adawy H, Sanad YM, Ghanem M. Editorial: Food safety and public health. Front Microbiol. 2023. https://doi.org/10.3389/fmicb.2023.1169139

 

Jude R, da Silva AP, Rejmanek D, Crossley B, Jerry C, Stoute S, Gallardo RA. Whole-genome sequence of a genotype VIII infectious bronchitis virus isolated from California layer chickens in 2021. Microbiol Resour Announc. 2023.  https://doi.org/10.1128/MRA.00959-22

 

***Jude R, da Silva AP, Slay AM, Luciano RL, Jordan B, Gallardo RA. Mitigation of False Layer Syndrome Through Maternal Antibodies Against Infectious Bronchitis Virus. Avian Dis. 2024. https://doi.org/10.1637/aviandiseases-D-23-00039

 

Lee CW, Bakre A, Olivier TL, Alvarez-Narvaez S, Harrell TL, Conrad SJ. Toll-like Receptor Ligands Enhance Vaccine Efficacy against a Virulent Newcastle Disease Virus Challenge in Chickens. Pathogens. 2023. https://doi.org/10.3390/pathogens12101230

 

Lee J, Lee CW, Suarez DL, Lee SA, Kim T, Spackman E. Efficacy of commercial recombinant HVT vaccines against a North American clade 2.3.4.4b H5N1 highly pathogenic avian influenza virus in chickens. PLoS One. 2024. https://doi.org/10.1371/journal.pone.0307100

 

Lopes TSB, Nankemann J, Breedlove C, Pietruska A, Espejo R, Cuadrado C, Hauck R. Changes in the Transcriptome Profile in Young Chickens after Infection with LaSota Newcastle Disease Virus. Vaccines (Basel). 2024. https://doi.org/10.3390/vaccines12060592

 

McDuie F, Overton C, Lorenz A, Matchett E, Mott A, Mackell D, Ackerman J, De La Cruz S, Patil V, Prosser D, Takekawa J, Orthmeyer D, Pitesky M, Diaz-Muñoz S, Riggs B, Gendreau J, Reed E, Petrie M, Williams C, Buler J, Hardy M, Ladman B, Legagneux P, Bêty J, Thomas P, Rodrigue j, Lefebvre J, Casazza M. Mitigating Risk: Predicting H5N1 Avian Influenza Spread with an Empirical Model of Bird Movement.  Transboundary and Emerging Diseases. 2024. https://doi.org/10.1155/2024/5525298

 

Palomino-Tapia VA, Zavala G, Cheng S, Garcia M. Attenuation of a Field Strain of Infectious Laryngotracheitis Virus in Primary Chicken Culture Cells and Adaptation to Secondary Chicken Embryo Fibroblasts. Poultry. 2023.  https://doi.org/10.3390/poultry2040038

 

Ramsubeik S, Stoute S, Gallardo RA, Crossley B, Rejmanek D, Jude R, Jerry C. Infectious Bronchitis Virus California Variant CA1737 Isolated from a Commercial Layer Flock with Cystic Oviducts and Poor External Egg Quality. Avian Dis. 2023. https://doi.org/10.1637/aviandiseases-D-23-00014

 

Reynolds DL, Simpson EB, Hille MM, Jia B. A Whole Blood Method for Assessing the Innate Immune Response in Chickens. Poultry. 2024.  https://doi.org/10.3390/poultry3030016

 

Reynolds DL, Simpson EB, Hille MM. Evidence for Antibody Dependent Enhancement for an Avian Coronavirus. International Journal of Veterinary Science. 2024. https://doi.org/10.47278/journal.ijvs/2024.159

 

Spackman E, Suarez DL, Lee CW, Pantin-Jackwood MJ, Lee SA, Youk S, Ibrahim S. Efficacy of inactivated and RNA particle vaccines against a North American Clade 2.3.4.4b H5 highly pathogenic avian influenza virus in chickens. Vaccine. 2023. https://doi.org/10.1016/j.vaccine.2023.10.070

 

Wang, Y, Saelao P, Chanthavixay G, Gallardo, RA, Wolc A, Fulton, JE, Dekkers JM, Lamont SJ, Kelly, TR, Zhou H. Genomic Regions and Candidate Genes Affecting Response to Heat Stress with Newcastle Virus Infection in Commercial Layer Chicks Using Chicken 600K SNP Array. Int. J. Mol. Sci. 2024 https://doi.org/10.3390/ijms25052640

 

Xu H, Vega-Rodriguez W, Campos V, Jarosinski KW. mRNA Splicing of UL44 and Secretion of Alphaherpesvirinae Glycoprotein C (gC) Is Conserved among the Mardiviruses. Viruses. 2024. https://doi.org/10.3390/v16050782

 

Zhou H, Baltenweck I, Dekkers J, Gallardo R, Kayang BB, Kelly T, Msoffe PLM, Muhairwa A, Mushi J, Naazie A, Otsyina HR, Ouma E, Lamont SJ. Feed the Future Innovation Lab for Genomics to Improve Poultry: a holistic approach to improve indigenous chicken production focusing on resilience to Newcastle disease. World’s Poultry Science Journal. 2024.  https://doi.org/10.1080/00439339.2024.2321350Top of FormTop of Form

 

Ahmed Ali, R.A. Gallardo, F.A. Careem. Comparative pathogenicity of CA1737/04 and Mass infectious bronchitis virus genotypes in laying chickens. Comparative immunology microbiology and infectious diseases. 2023. Frontiers in Veterinary Science. Accepted. 

 

da Silva AP, Buter R, Mills J, Dijkman R, Feberwee A, Beckstead R, Huberman Y, Jonas M, Malena R, Paolicchi F, Gallardo RA. Infectious Coryza Classification, Diagnostics, and a comprehensive investigation on the HMTp210 gene of Avibacterium paragallinarum. Avian Dis.2024 Submitted.

 

Lane J, Chenais E, Bird B, Vidal G, Zhou H, van Hoy G, Gallardo RA, Roug A, Smith W, Kelly T. A One Health Approach to Reducing Livestock Disease Prevalence in Developing Countries: Advances, Challenges, and Prospects. Annual Review of Animal Biosciences. In Press.

 

Nguyen V, Stoute S, Ramsubeik S, Miller I, Jerry C, Corsiglia, and Gallardo RA. Epidemiological patterns of the infectious coryza outbreak in California 2016-2022. Avian Diseases. Accepted.

 

Hashish A, Johnson TJ, Ghanem M, Sato Y, Macedo NR, LeCount KJ, El-Gazzar M. Complete Genome Sequences of Eight Pasteurella multocida Isolates Representing All Lipopolysaccharide Outer Core Loci. “Microbiology Resource Announcements – Accepted – September 2024”.