NC7: Conservation, Management, Enhancement and Utilization of Plant Genetic Resources

(Multistate Research Project)

Status: Active

Project Menu

SAES-422 Reports

09/25/2023

Illinois

Banerjee S, Singh R, Eilts K, Sacks EJ, Singh V. 2022. Valorization of Miscanthus x giganteus for sustainable recovery of anthocyanins and enhanced production of sugars. Journal of Cleaner Production. 369:133508. https://doi.org/10.1016/j.clepro.2022.133508

Njuguna JN, Clark LV, Anzoua KG, Bagmet L, Chebukin P, Dwiyanti MS, Dzyukenko E, Dzyubenko N, Ghimire BK, Jin X, Johnson DA, Jorgensen U, Kjeldsen JB, Nagano H, Peng J, Petersen KK, Sabitov A, Seong ES, Yamada T, Yoo JH, Yu CY, Zhao H, Long SP, Sacks EJ. 2023. Biomass yield in a genetically diverse Miscanthus sacchariflorus germplasm panel phenotyped at five locations in Asia, North America, and Europe. GCB Bioenergy. 00:1-21. https://doi.org/10.1111/gcbb.13043

Palma-Salgado S, Ku KM, Juvick JA, Nguyen TH, Feng H. 2023. Artificial phylloplanes resembling physicochemical characteristics of selected fresh produce and their potential use in bacterial attachment/removal studies. Food Control. 149:109730. https://doi.org/10.1016/j.foodcont.2023.109730

Paulsmeyer MN, Juvik JA. 2023. Increasing aleurone layer number and pericarp yield for elevated nutrient content in maize. G3 Journal. 13:jkad085. https://doi.org/10/1093/g3journal/jkad085

Paulsmeyer MN, Juvik JA. 2023. R3-MYB repressor Mybr97 is a candidate gene associated with the Anthocyanin3 locus and enhanced anthocyanin accumulation in maize. Theor Appl Genet. 136:55. https://doi.org/10.1007/s00122-023-04275-4

Sakhale SA, Yadav S, Clark LV, Lipka AE, Kumar A, Sacks EJ. 2023. Genome-wide association analysis for emergence of deeply sown rice (Oryza sativa) reveals novel aus-specific phytohormone candidate genes for adaptation to dry-direct seeding in the field. Front. in Plant Sci. 12:1172816. https://doi.org/10.3389/fpls.2023.1172816

Trieu A, Belaffif MB, Hirannaiah P, Manjunatha S, Wood R, Bathula Y, Billingsley RL, Arpan A, Sacks EJ, Clemente TE, Moose SP, Reichert NA, Swaminathan K. 2022. Transformation and gene editing in the bioenergy grass Miscanthus. Biotechnol Biofuels. 15:148. https://doi.org/10.1186/s13068-022-02241-8

Varela S, Zheng X, Njuguna JN, Sacks EJ, Allen DP, Ruhter J, Leakey ADB. 2022. Deep convolutional neural networks exploit high-spatial-and temporal-resolution aerial imagery to phenotype key traits in Miscanthus. Remote Sensing. 14:5333. https://doi.org/10.3390/rs14215333

Zhang S, Huang G, Zhang Y, Lv X, Wan K, Liang J, Feng Y, Dao J, Wu S, Zhang L, Yang X, Lian X, Huang L, Shao L, Zhang J, Qin S, Tao D, Crews TE, Sacks EJ, Wade LJ, Hu F. 2022. Sustained productivity and agronomic potential of perennial rice. Nature Sustainability. 6:28-38. https://doi.org/10.1038/s41893-002-00997-3

Indiana

Bessho-Uehara K, Masuda K, Wang DR, Angeles-Shim RB, Obara K, Nagai K, Murase R, Aoki S, Furuta T, Miura K, Wu J, Yamagata Y, Yasui H, Kantar MB, Yoshimura A, Kamura T, McCouch SR, Ashikiri. 2023. Regulator of Awn Elongation 3, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication. PNAS. 120:e2207105120. https://doi.org/10.1073/pnas.2207105120

Diatta-Holgate E, Hugghis E, Weil C, Faye JM, Danquah A, Diatta C, Tongoona P, Danquah EY, Cisse N, Tuinstra MR. 2022. Natural variability for protein digestibility and grain quality traits in a West African Sorghum Association Panel. Journal Cereal Sci. p.103504. https://doi.org/10.1016/j.jcs.2022.103504

Lin M, Lynch V, Ma D, Maki H, Jin J, Tuinstra MR. 2022. Multi-species prediction of physiological traits with hyperspectral modeling. Plants. 11:676. https://doi.org/10.3390/plants11050676.

Marghoob MU, Rodriquez-Sanchez A, Imran A, Mubeen F, Hoagland L. 2022. Diversity and functional traits of indigenous soil microbial flora associated with salinity and heavy metal concentrations in agricultural fields within the Indus Basin region, Pakistan. Front. in Microbiol. 13:1020175. https://doi.org/10.3389/fmicb.2022.1020175

Nepal N, Condori-Apfata JA, Gaire R, Anco ME, Scofield S, Zhang C, Mohammadi M. 2023. Phenotypic and genotypic resources for the USDA quinoa (Chenopodium quinoa) genebank accessions. Crop Sci. 63(5):2685-2698. https://doi.org/10.1002/csc2.21037

Pathak H, Buckmaster D, Messina C, Wang D. 2023. Crop growth model: Optimal application of nitrogen fertilizer in corn for economic returns and environmental sustainability. ASABE Annual Meetings. 2300421. https://doi.org/10.13031/aim.202300421

Rizi MS, Mohammadi M. 2023. Breeding crops for enhanced roots to mitigate against climate change without compromising yield. Rhizosphere. 26:100702. https://doi.org/10.1016/j.rhisph.2023.100702

Simons J, Herbert T, Kauffman C, Batete M, Simpson A, Katsuki Y, Le D, Amundson D, Buescher E, Weil C, Tuinstra MR, Addo-Quaye C. 2022. Systematic prediction of EMS-induced mutations in a sorghum mutant population. Plant Direct. 6(5):e404. https://doi.org/10.1002/pld3.404

Souza A, Rojas MZ, Yang Y, Lee L, Hoagland L. 2022. Classifying cadmium contaminated leafy vegetables using hyperspectral imaging and machine learning. Heliyon. 8:e12256. https://doi.org/10.1016/j.heliyon.2022.e12256

Ting T, Souza A, Imel R, Guadagno CR, Hoagland C, Yang Y, Wang DR. 2023. Quantifying physiological trait variation with automated hyperspectral imaging in rice. Front. in Plant Sci. 21:August 2023. https://doi.org/10.3389/fpls

Tolley SA, Brito LF, Wang DR, Tuinstra MR. 2023. Genomic prediction and association mapping of maize grain yield in multi-environment trials based on reaction norm models. Frontiers in Genetics. 14:1221751. https://doi.org/10.3389/fgene.2023.1221751

Trivino NJ, Rodriquez-Sanchez A, Filley T, Camberato JJ, Colley M, Simon P, Hoagland L. 2023. Carrot genotypes differentially alter soil bacterial communities and decomposition of plant residue in soil. Plant and Soil. 486:587-606. https://doi.org/10.1007/s11104-023-05892-0

Wang T, Crawford MM, Tuinstra MR. 2023. A novel transfer learning framework for sorghum biomass prediction using UAV-based remote sensing data and genetic markers. Front. in Plant Sci. 14. https://doi.org/10.3389/fpls.2023.1138479

Zaidi PH, Vinayan MT, Nair SK, Kuchanur PH, Kumar R, Singh SB, Tripathi MP, Patil P, Ahmed S, Hussain A, Kulkarni AP, Wangmo P, Tuinstra MR, Prasanna BM. 2023. Heat-tolerant maize for rainfed hot, dry environments in the lowland tropics: From breeding to improved seed delivery. The Crop Journal. 11(4):986-1000. https://doi.org/10.1016/j.cj.2023.06.008

Iowa

Aboobucker SI, Zhou L, Lübberstedt T. 2023. Haploid male fertility by parallel spindle genes in Arabidopsis thaliana. Nature Plants. 9:214-218. https://doi.org/10.1038/s41477-022-01332-6

Cook TM, Isenegger D, Dutta S, Sahab S, Kay P, Aboobucker SI, Biswas E, Heerschap S, Nikolau BJ, Dong L, Lübberstedt T. 2023. Overcoming roadblocks for in vitro nurseries in plants: induction of meiosis. Front. in Plant Sci. 14:1204813. https://doi.org/10.3389/fpls.2023.1204813

Dermail A, Lübberstedt T, Suwarno WB, Chankaew S, Lertrat K, Ruanjaichon V, Suriharn K. 2023. Combining ability of tropical x temperate maize inducers for haploid induction rate, R1-nj seed set, and agronomic traits. Front. in Plant Sci. 14:1154905. https://doi.org/10.3389/fpls.2023.1154905

Dong D, Nagasubramanian K, Wang R, Frei UK, Jubery TZ, Lübberstedt T, Ganapathysubramanian B. 2023. Self-supervised maize kernel classification and segmentation for embryo identification. Front. in Plant Sci. 14:1108355. https://doi.org/10.3389/fpls.2023.1108355

Dos Santos CL, Miguez FE, King KA, Ruiz A, Sciarresi C, Baum ME, Danalatos GJN, Stallman M, Wiley E, Pico LO, Thies A, Puntel LA, Topp CN, Trifunovic S, Eudy D, Mensah C, Edwards JW, Schnable PS, Lamkey KR, Vyn TJ, Archontoulis SV. 2023. Accelerated leaf appearance and flowering in maize after four decades of commercial breeding. Crop Sci. https://doi.org/10.1002/csc2.21044

Guo X, Qiu Y, Nettleton D, Schnable PS. 2023. High-throughput field plant phenotyping: A self-supervised sequential CNN method to segment overlapping plants. Plant Phenomics. 5:0052. https://doi.org/10.34133/plantphenomics.0052

Hintch TD, Lauter AM, Kinney SM, Lübberstedt T, Frei U, Duangpageng P, Edwards JW, Scott MP. 2023. Development of maize inbred lines with elevated grain methionine concentration from a high methionine population. Crop Sci. 63:2417-2425. https://doi.org/10.1002/csc2.20983

Hou F, Zhang N, Ma L, An L, Zhou X, Zou C, Yang C, Pan G, Lübberstedt T, Shen Y. 2023. ZmbZIP54 and ZmFDX5 cooperatively regulate maize seedling tolerance to lead by mediating ZMPRP1 transcription. Int. Journal of Biological Macromolecules. 224:621-633. https://doi.org/10.1016/j.ijbiomac.2022.10.151

Kusmec A, Attigala L, Dai X, Srinivansan S, Yeh CT, Schnable PS. 2023. A genetic tradeoff for tolerance to moderate and severe heat stress in US hybrid maize. PLOS Genetics. 19:e1010799. https://doi.org/10.1371/journal.pgen.1010799

Ledesma A, Aguilar FS, Uberti A, Hufford M, Edwards J, Hearne S, Lübberstedt T. 2023. Haplotype sharing and diversity analyses of DH Lines derived from different cycles of the Iowa Stiff Stalk Synthetic Maize Population. Front. in Plant Sci. 14:1226072. https://doi.org/10.3389/fpls.2023.1226072

Liang T, Hu Y, Xi N, Zhang M, Zou C, Ge F, Yuan G, Gao S, Zhang S, Pan G, Ma L, Lübberstedt T, Shen Y. 2023. GWAS across multiple environments and WGCNA suggest the involvement of ZmARF₂₃ in embryonic callus induction from immature maize embryos. Theor Appl Genet. 136:93. https://doi.org/10.1007/s00122-023-04314-x

Liao CY, Pu Y, Nolan TM, Montes C, Guo H, Walley JW, Yin Y, Bassham DC. 2023. Brassinosteroids modulate autophagy through phosphorylation of RAPTOR1B by the GSK3-like kinase BIN2 in Arabidopsis. Autophagy. 19:1293-1310. https://doi,org/10.1080/15548627.2022.2124501

McMillen MS, Mahama AA, Sibiya J, Lübberstedt T, Suza WP. 2022. Improving drought tolerance in maize: Tools and techniques. Frontiers in Genetics. 13:1001001. https://doi.org/10.3389/fgene.2022.1001001

Ni Z, Moeinizade S, Kusmec A, Hu G, Wang L, Schnable PS. 2023. New insights into trait introgression with the look-ahead intercrossing strategy. G3 Journal. 13:jkad042. https://doi.org/10.1093/g3journal/jkad042

Peng L, Lang-lang M, Si-yi J, Yao H, Guang-sheng Y, Fei G, Zhong C, Chao-ying Z, Guang-tang P, Lübberstedt T, Ya-ou S. 2023. Population genomic analysis reveals key genetic variations and driving force for embryonic callus induction capability in maize. Journal of Integrative Agriculture. https://doi.org/10.1016/j.jia.2023.06.032

Rohner M, Manzanares C, Yates S, Thorogood D, Copetti D, Lübberstedt T, Asp T, Studer B. 2022. Fine-mapping and comparative genomic analysis reveal the gene composition at the S and Z self-incompatibility loci in grasses. Mol. Biol. and Evol. 40:259. https://doi.org/10.1093/molbev/msac259

Ruiz A, Trifunovic S, Eudy DM, Sciarresi CS, Baum M, Danalatos GJN, Elli EF Kalogeropoulos G, King K, Santos CD, Thies A, Pico LO, Catellano MJ, Schnable PS, Topp C, Graham M, Lamkey KR, Vyn TJ, Archontoulis SV. 2023. Harvest index has increased over the last 50 years of maize breeding. Field Crops Res. 300:108991. https://doi.org/10.1016.j.fcr.2023.108991

Sintanaparadee P, Dermail A, Lübberstedt T, Lertrat K, Chankaew S, Ruanjaichon V, Phakamas N, Suriharn K. 2022. Seasonal variation of tropical savanna altered agronomic adaptation of Stock-6-derived inducer lines. Plants. 11:2902. https://doi.org/10.3390/plants11212902

Trentin HU, Yavuz R, Dermail A, Frei UK, Dutta S, Lübberstedt T. 2023. A comparison between inbred and hybrid maize haploid inducers. Plants. 12:1095. https://doi.org/10.3390/plants12051095

Wang J, Li D, Peng Y, Cai M, Liang Z, Yuan Z, Du X, Wang J, Schnable PS, Gu R, Li L. 2022. The anthocyanin accumulation related ZmBZ1, facilitates seedling salinity stress tolerance via ROS scavenging. J. Mol. Sci. 23:16123. https://doi.org/10.3390/ijms232416123

Kansas

Ayalew H, Schapaugh W, Vuong T, Nguyen HT. 2022. Genome-wide association analysis identified consistent QTL for seed yield in a soybean diversity panel tested across multiple environments. Plant Genome. 15:e20268. https://doi/org/10.1002/tpg2.20268

Bian R, Liu N, Xu Y, Su Z, Chai L, Bernardo A, St. Amand P, Fritz A, Zhang G, Rupp J, Akhunov E, Jordan KW, Bai G. 2023. Quantitative trait loci for rolled leaf in a wheat EMS mutant from Jagger. Theor and Appl Genet. https://doi.org/10.1007/s00122-023-04284-3

Cruppe G, Lemes da Silva C, Lollato RP, Fritz AK, Kuhnem P, D Cruz C, Calderon L, Valent B. 2023. QTL pyramiding provides marginal improvement in 2NvS-based wheat blast resistance. Plant Dis. 107(8):2407-2416. https://doi.org/10.1094/PDIS-09-22-2030-RE

He F, Wang W, Rutter WB, Jordan KW, Ren J, Taagen E, DeWitt N, Sehgal D, Sukumaran S, Dreisigacker S, Reynolds M, Halder J, Sehgal SK, Liu S, Chen J, Fritz A, Cook J, Brown-Guedira G, Pumphrey M, Carter A, Sorrells M, Dubcovsky J, Hayden MJ, Akhunova A, Morrell PL, Szabo L, Rouse M, Akhunov E. 2022. Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat. Nature Communications. 13(1):826. https://doi.org/10.1038/s41467-022-28453-y

Nkurikiye E, Chen G, Tilley M, Wu X, Zhang G, Fritz A, Li Y. 2023. Incorporating chickpea flour can enhance mixing tolerance and dough strength of wheat flour. Cereal Chem. https://doi.org/10.1002/cche.10705

Secchi MA, Correndo AA, Stamm MJ, Durrett T, Prasad PVV, Messina CD, Ciampitti IA. 2022. Suitability of different environments for winter canola oil production in the United States of America. Field Crops Res. 27:108658. https://doi.org/10.1016/j.fcr.2022.108658

Secchi MA, Fernandez JA, Stamm MJ, Durrett T, Prasad PVV, Messina CD, Ciampitti IA. 2023. Effects of heat and drought on canola (Brassica napus L.) yield, oil, and protein: A meta-analysis. Field Crops Res. 293:108848. https://doi.org/10.1016/j.fcr.2023.108848

Shrestha S, Koo D-H, Evers B, Wu S, Walkowiak S, Hucl P, Pozniak C, Fritz A, Poland J. 2023. Wheat doubled haploids have a marked prevalence of chromosomal aberrations. Plant Genome. 16(2):e20309. https://doi.org/10.1002/tpg2.20309

Michigan

Amongi W, Nkalubo ST, Ochwo-Ssemakula M, Badji A, Dramadri IO, Odongo TL, Nuwamanya E, Tukamuhadwe P, Izquierdo P, Cichy K, Kelly J, Mukankusi C. 2023. Genetic clustering, and diversity of African panel of released common bean genotypes and breeding lines. Genet Resources and Crop Evol. 70:2063-2076. https://doi.org/10.1007/s10722-023-01559-y

Amongi W, Nkalubo ST, Ochwo-Ssemakula M, Badji A, Dramadri IO, Odongo TL, Nuwamanya E, Tukamuhabwe P, Izquierdo P, Cichy K, Kelly J, Mukankusi C. 2023. Phenotype based clustering, and diversity of common bean genotypes in seed iron concentration and cooking time. PLOS One. 0284976. https://doi.org/10.1371/journal.pone.0284976

Behling WL, Douches DS. 2023. The effect of self-compatibility factors on interspecific compatibility in Solanum section Petota. Plants. 12:1709. https://doi.org/10.3390/plants12081709

Bird KA, Pires JC, VanBuren R, Xiong Z, Edger PP. 2023. Dosage-sensitivity shapes how genes transcriptionally respond to allopolyploidy and homoeologous exchange in resynthesized Brassica napus. Genetics. 225(1):iyad114. https://doi.org /10.1093/genetics/iyad114

Chen H, Baetsen-Young A, Thompson A, Day B, Lovis W, Wrobel G. 2023. Archaeological Bolivian maize genomes suggest diversity is associated with Inca cultural expansion and environmental variation in South America. Research Square. https://doi.org/10.21203/rs.3.rs-2592230/v1

Chen QXC, Warner RM. 2022. Identification of QTL for Plant Architecture and Flowering Performance Traits in a Multi-Environment Evaluation of a Petunia axillaris x P. exserta Recombinant Inbred Line Population. Horticulturae. 8:1006. https://doi.org/10.3390/horticulturae8111006

Goeckeritz CZ, Gottschalk C, van Nocker S, Hollender CA. 2023. Malus Species with Diverse Bloom Times Exhibit Variable Rates of Floral Development. Journal of the American Society for Hort. Sci. 148:64-73. https://doi.org /10.21273/JASHS05236-22

Goeckeritz CZ, Rhoades KE, Childs KL, Iezzoni AF, VanBuren R, Hollender CA. 2023. Genome of tetraploid sour cherry (Prunus cerasus L.) ‘Montmorency’ identifies three distinct ancestral Prunus genomes. Hort. Res. 10:uhad097. https://doi.org /10.1093/hr/uhad097

Grumet R, Lin YC, Rett-Cadman S, Malik A. 2022. Morphological and genetic diversity of cucumber (Cucumis sativus L.) fruit development. Plants. 12:0023. https://doi.org/10.3390/plants12010023

Hernandez CO, Labate J, Reitsma K, Fabrizio J, Bao K, Fei Z, Grumet R, Mazourek M. 2023. Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections. Front. in Plant Sci. 14:1130814. https://doi.org/10.3389/fpls.2023.1130814

Hooper SD, Bassett A, Wiesinger JA, Glahn RP, Cichy KA. 2023. Extrusion and drying temperatures enhance sensory profile and iron bioavailability of dry bean pasta. Food Chem. Advances. 3:100422. https://doi.org/10.1016/j.focha.2023.100422

Izquierdo P, Kelly JD, Beebe SE, Cichy K. 2023. Combination of meta-analysis of QTL and GWAS to uncover the genetic architecture of seed yield and seed yield components in common bean. The Plant Genome. 16:e20328. https://doi.org/10.1002/tpg2.20328

Jayakody TB, Hamilton JP, Jensen J, Sikora S, Wood JC, Douches DS, Buell CR. 2023. Genome Report: Genome sequence of 1S1, a transformable and highly regenerable diploid potato for use as a model for gene editing and genetic engineering. G3 Journal. 13:jkad036. https://doi.org/10.1093/g3journal/jkad036

Jeffery HR, Mudukuti N, Buell CR, Childs KL, Cichy K. 2023. Gene expression profiling of soaked dry beans (Phaseolus vulgaris L.) reveals cell wall modification plans a role in cooking time. The Plant Genome. e20364. https://doi.org/10.1002/tpg2.20364

Kick DR, Wallace JG, Schnable JC, Kolkman JM, Alaca B, Beissing TM, Edwards J, Ertl D, Flint-Garcia S, Gage JL, Hirsch CN, Knoll JE, de Leon N, Lima DC, Moreta DE, Singh MP, Thompson A, Weldekidan T, Washburn JD. 2023. Yield prediction through integration of genetic, environmental, and management data through deep learning. G3 Journal. 13:jkad006. https://doi.org/10.1093/g3journal/jkad006

Lee S, Enciso-Rodriguez FE, Behling W, Jayakody T, Panicucci K, Zarka D, Nadakuduti SS, Buell CR, Manrique-Carpintero NC, Douches DS. 2023. HT-B and S-RNase CRISPR-Cas9 double knockouts show enhanced self-fertility in diploid Solanum tuberosum. Front. in Plant Sci. 14:1151347. https://doi.org/10.3389/fpls.2023.1151347

Lima DC, Castro Aveles A, Alpers RT, McFarland BA, Kaeppler S, Ertl D, Romay MC, Gage JL, Holland J, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Hirsch CN, Hood E, Hooker DC, Knoll JE, Kolkman JM, Liu S, McKay J, Minyo R, Moreta DE, Murray SC, Nelson R, Schnable JC, Sekhon RS, Singh MP, Thomison P, Thompson A, Tuinstra M, Wallace J, Washburn JD, Wldekidan T, Wisser RJ, Xu W, de Leon N. 2023. 2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project. BMC Genomic Data. 24:29. https://doi.org/10.1186/s12863-023-01129-2

Lima DC, Washburn JD, Verela JI, Chen Q, Gage JL, Romay MC, Holland J, Ertl D, Lopez-Cruz M, Aguate FM, de los Campos G, Kaeppler S, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Gore MA, Hirsch CN, Knoll JE, McKay J, Minyo R, Murray SC, Ortez OA, Schnable JC, Sekhon RS, Singh MP, Sparks EE, Thompson A, Tuinstra M, Wallace J, Weldekidan T, Xu W, de Leon N. 2023. Genomes to Fields 2022 maize genotype by environment prediction competition. BMC Research Notes. 16:148. https://doi.org/10.1186/s13104-023-06421-z

Lin F, Li W, McCoy AG, Wang K, Jacobs J, Zhang N, Huo X, Wani SH, Gu C, Chilvers MI, Wang D. 2022. Identification and characterization of pleiotropic and epistatic QDRL conferring partial resistance to Pythium irregulare and P. sylvaticum in soybean. Theor Appl Genet. 135:3571-3582. https://doi-org/10.1007/s00122-022-04201-0

Lopez SR, Wiersma AT, Strauss NM, Watkins T, Baik BK, Zhang GR, Sehgal SK, Kolb FL, Poland JA, Mason RE, Carter AH, Olson EL. 2023. Description of U6719-004 wheat germplasm with YrAS2388R stripe rust resistance introgression from Aegilops tauschii. J Plant Reg. 17:26-33. https://doi.org/10.1002/plr2320226

Pardo J, Wai CM, Harman M, Nguyen A, Kremling KA, Romay MC, Lepak N, Bauerle TL, Buckler ES, Thompson AM, VanBuren R. 2023. Cross-species predictive modeling reveals conserved drought responses between maize and sorghum. PNAS. 120:e2216894120. https://doi.org/10.1073/pnas.2216894120

St. Aubin S, Wai CM, Raju SKK, Niederhuth CE, VanBuren R. 2022. Regulatory dynamics distinguishing desiccation tolerance strategies within resurrection grasses. Plant Direct. 6:e457. https://doi.org /10.1002/pld3.457

VanBuren R, Wai CM, Giarola V, Zupunski M, Pardo J, Kalinowski M, Grossmann G, Bartels D. 2022. Core cellular and tissue-specific mechanisms enable desiccation tolerance in Craterostigma. Plant Journal. 114:231-245. https://doi.org/10.1111/tpj.16165

Warner RM, Abeli PJ, Beaudry RM. 2023. Development of synthetic cultivars to improve production of desired steviol glycosides in stevia. Acta Horticulturae. 1362:629-633. https://doi.org/10.17660/ActaHortic.2023.1362.85

Yu J, Wu S, Sun H, Wang X, Tang X, Guo S, Zhang Z, Huang S, Xu Y, Weng Y, Mazourek M, McGregor C, Renner SS, Branham S, Kousik C, Wechter WP, Levi A, Grumet R, Zheng Y, Fei Z. 2023. CuGenDBv2: an updated database for cucurbit geonomics. Nucleic Acids Research. 51:1457-D1464. https://doi.org/10.1093/nar/gkac921

Minnesota

Bandillo NB, Jarquin D, Posadas LG, Lorenz AJ, Grael GL. 2022. Genomic selection performs as effectively as phenotypic selection for increasing seed yield in soybean. The Plant Genome. 16:e20285. https://doi.org/10.1002/tpg2.20285

Gilbert E, Merry R, Campbell BW, Stupar RM, Lorenz AJ. 2023. A genome-wide analysis of the USDA Soybean Isoline Collection. The Plant Genome. 16:e20310. https://doi.org/10.1002/tpg2.20310

Menger JP, Bhusal SJ, Kock RL, Lorenz AJ. 2022. Evaluation of advanced soybean breeding lines for resistance to the soybean aphid, 2022. Arthropod Management Tests. 47:137. https://doi.org/10.1093/amt/tsac137

Virdi KS, Sreekanta S, Dobbels A, Haaning A, Jarquin D, Stupar RM, Lorenz AJ, Muehlbauer GJ. 2023. Branch angle and leaflet shape are associated with canopy coverage in soybean. The Plant Genome. 16:e20304. https://doi.org/10.1002/tpg2.20304

Missouri

Baxter I, Ainsworth EA, Brooks MD, Castano-Duque LM, Londo JP, Washburn JD, McElrone AJ, Coyne CJ, et al. 2023. Inclusive collaboration across plant physiology and genomics: now is the time! Plant Direct. 7(5):e493. https://doi.org/10.1002/pld3.493

Boateng ID, Kuehnel L, Daubert CR, Agliata J, Zhang W, Kumar R, Flint-Garcia S, Azlin M, Somavat P, Wan C. 2023. Updating the status quo on the extraction of bioactive compounds in agro-products using a two-pot multivariate design. A comprehensive review. Royal Soc. of Chem. 14:569-601. https://doi.org/10.1039/D2FO00250E

Boateng ID, Kumar R, Daubert CR, Flint-Garcia S, Mustapha A, Kuehnel L, Agliata J, Li Q, Wan C, Somavat P. 2023. Sonoprocessing improves phenolics profile, antioxidant capacity, structure, and product qualities of purple corn pericarp extract. Ultrasonics Sonochemistry. 92:e106418. https://doi.org/10.1016/j.ultsonch.2023.106418

Boateng ID, Mustapha A, Daubert CR, Kuehnel L, Kumar R, Flint-Garcia S, Agliata J, Wan C, Somavat P. 2023. Novel two-pot microwave extraction of purple corn pericarp’s phenolics and evaluation of the polyphenol-rich extract’s product quality, bioactivities, and structural properties. Food and Bioprocess Tech. https://doi.org/10.1007/s11947-023-03072-7

Boateng ID, Mustapha A, Kuehnel L, Daubert CR, Kumar R, Agliata J, Flint-Garcia S, Wan C, Somavat P. 2023. From purple corn waste (pericarp) to polyphenol-rich extract with higher bioactive contents and superior product qualities using two-step optimization techniques. Industrial Crops and Products. 200:116871. https://doi.org/10.1016/j.indcrop.2023.116871

Braun D, Washburn JD, Wood JD. 2023. Enhancing the resilience of plant systems to climate change. Journal of Exp. Bot. 74(9):2787-2789. https://doi.org/10.1093/jxb/erad090

Chan YO, Dietz N, Zeng S, Wang J, Flint-Garcia S, Salazar-Vidal MN, Skrabisova M, Joshi T. 2023. The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis. BMC Genomics. 24:107. https://doi.org/10.1186/s12864-023-09161-3

Choquette NE, Holland JB, Weldekidan T, Drouault J, de Leon N, Flint-Garcia S, Lauter N, Murray SC, Xu W, Wisser RJ. 2023. Environment-specific selection alters flowering-time plasticity and results in pervasive pleiotropic responses in maize. New Phytologist. 238:737-749. https://doi.org/10.1111/nph.18769

Flint-Garcia S, Feldmann MJ, Dempewolf H, Morrell PL, Ross-Ibarra J. 2023. Diamonds in the not-so-rough: Wild relative diversity hidden in crop genomes. PLOS Biology. 3002235. https://doi.org/10.1371/journal.pbio.3002235

Guan JC, Li C, Flint-Garcia S, Suzuki M, Wu S, Saunders JW, Dong L, Bouwmeester HJ, McCarty DR, Kock KE. 2023. Maize domestication phenotypes reveal strigolactone networks coordinating grain size evolution with kernel-bearing cupule architecture. The Plant Cell. 35:1013-1037. https://doi.org/10.1093/plcell/koac370

Hu H, Crow T, Nojoomi S, Schulz AJ, Estevez-Palmas JM, Hufford MB, Flint-Garcia S, Sawers, R, Rellan-Alvarez R, Ross-Ibarra J, Runcie DE. 2022. Allel-specific expression reveals multiple paths to highland adaptation in maize. Mol Biol and Evol. 39:239. https://doi.org/10.1093/molbev/msac239

Keigler JI, Wiesinger JA, Flint-Garcia SA, Glahn RP. 2023. Iron bioavailability of maize (Zea mays L.) after removing the germ fraction. Front. in Plant Sci. 14:1114760. https://doi.org/10.3389/fpls.2023.1114760

Kick DR, Wallace JG, Schnable JC, Kolkman JM, Alaca B, Beissinger TM, Edwards J, Ertl D, Flint-Garcia S, Gage JL, Hirsch CN, Knoll JE, de Leon N, Lima DC, Moreta DE, Singh MP, Thompson A, Weldekidan T, Washburn JD. 2023. Yield prediction through integration of genetic, environmental, and management data through deep learning. G3 Journal. 13:jkad006. https://doi.org/10.1093/g3journal/jkad006

Ruppel M, Nelson S, Sidberry G, Mitchell M, Kick DR, Thomas S, Guill K, Oliver M, Washburn JD. 2023. RootBot: high-throughput root stress phenotyping robot. Appl in Plant Sci. 11(6):e11541. https://doi.org/10.1002/aps3.11541

Nebraska

Baenziger PS, Frels KA, Boehm Jr J, Rose DJ, Xu L, Finnie SM, Wegulo SN, Regassa T, Easterly AC, Creech CF, Santra DK, Klein RN, Kolmer JJ, Chen MS, Bowden RL, Guttieri MJ, Bai G, El-Basyoni Salah I, Masterson SD, Poland J. 2022. Registration of “NW13493” hard white wheat. J Plant Reg. 17:136-145. https://doi.org/10.1002/plr2.20270

Baenziger PS, Frels K, Greenspan S, Jones J, Lovegrove A, Rose D, Shewry P, Wallace R. 2022. A stealth health approach to dietary fibre. Nature Food. 4:5-6. https://doi.org/10.1038/s43016-022-00674-w

Baenziger PS, Masterson SD, Boehm Jr JD, Belamkar V, Barnett MD, Rose DJ, Xu L, Wegulo SN, Tegassa T, Easterly AC, Creech CF, Santra DK, Kruger GR, Hergert GW, Klein RN, Jin Y, Kolmer J, Chen MS, Hein GL, Bowden RL, Guttieri MJ, Bai G, El-Basyoni Salah I, Poland J. 2023. Registration of LCS ‘Valiant’ hard red winter wheat. J Plant Reg. 17:125-135. https://doi.org/10.1002/plr2.20256

Chen J, Wang Z, Tan K, Huang W, Shi J, Li T, Hu J, Wang K, Wang C, Xin B, Zhao H, Song W, Hufford MB, Schnable JC, Jin W, Lai J. 2023. A complete telomere-to-telomere assembly of the maize genome. Nature Genetics. 55:1221-1231. https://doi.org/10.1038/s41588-023-01419-6

Cubins JA, Wells S, Gesch RW, Johnson GA, Walla MK, Chopra R, Marks MD, Swenson RD, Frels K. 2023. Harvest aids did not advance maturity of non-shatter pennycress. Crop Sci. 63:2465-2474. https://doi.org/10.1002/csc2.20979

Diers BW, Specht JE, Graef GL, Song Q, Rainey KM, Ramasubramanian V, Liu X, Myers CL, Stupar RM, An YQC, Beavis WD. 2023. Genetic architecture of protein and oil content in soybean seed and meal. The Plant Genome. 16:e20308. https://doi.org/10.1002/tpg2.20308

Dweikat I, Braun D, Benjamin B, Teingtham K. 2023. Detection of reproducible QTL associated with bioenergy traits in sorghum across several growing environments. Euphytica. 219:70. https://doi.org/10.1007/s10681-023-03194-1

Dweikat IM, Gelli M, Bernards M, Martin A, Jhala A. 2023. Mutations in the acetolactate synthase (ALS) enzyme affect shattercane (Sorghum bicolor) response to ALS-inhibiting herbicides. Hereditas. 160:28. https://doi.org/10.1186/s41065-023-00291-y

Elbasyoni IS, Eltaher S, Morsy S, Mashaheet AM, Abdallah AM, Ali HG, Mariey SA, Baenziger PS, Frels K. 2022. Novel single-nucleotide variants for morpho-physiological traits involved in enhancing drought stress tolerance in barley. Plants. 11:3072. https://doi.org/10.3390/plants11223072

Elbasyoni IS, Morsy S, Abdelghany AM, Naser M, Mashaheet AM, Abdallah AM, Hefez M, Frels K, Baenziger S. 2023. Nebraska winter wheat unexpected flowering in Egypt: New improvement opportunities. Agron Journal. 115:698-712. https://doi.org/10.1002/agj2.21243

Engelhorn J, Snodgrass SJ, Kok A, Seetharam AS, Schneider M, Kiwit T, Singh A, Banf M, Khaipho-Burch M, Runcie DE, Sanchez Camargo V, Torres-Rodriguez JV, Sun G, Stam M, Fiorani F, Schnable JC, Bass HW, Hufford MB, Stich B, Frommer WB, Ross-Ibarra J, Hartwig T. 2023. Phenotypic variation in maize can largely be explained by genetic variation at transcription factor binding sites. bioRxiv. https://doi.org/10.1101/2023.08.08.551183

Grzybowski MW, Mural RV, Xu G, Turkus J, Yang J, Schnable JC. 2023. A common resequencing-based genetic marker data set for global maize diversity. The Plant Journal. 113:1109-1121. https://doi.org/10.1111/tpj.16123

Guttieri MJ, Bowden RL, Zhang G, Haley S, Frels K, Hein GL, Jordan KW. 2023. Agronomic and quality impact of a shortened translocation for wheat streak mosaic virus resistance. Crop Sci. 63:622-634. https://doi.org/10.1002/csc2.20876

Khound R, Mathivanan RK, Santra DK. 2023. Proso millet nutraceutomics for human health, and nutritional security. In: Kole C. (ed) Compendium of Crop Genome Designing for Nutraceuticals, Springer, Singapore. https://doi.org/10.1007/978-981-19-3627-2_10-1

La Borde N, Rajewski J, Dweikat I. 2023. Novel QRL for chilling tolerance at germination and early seedling stages in sorghum. Frontiers in Genetics. 14:1129460. https://doi.org/10.3389/fgene.2023.1129460

La Menza NC, Arkebauer TJ, Lindquist JL, Monzon JP, Knops JMH, Graef G, Scoby D, Howard R, Rees J, Specht JE, Grassini P. 2023. Decoupling between leaf nitrogen and radiation use efficiency in vegetative and early reproductive stages in high-yielding soybean. Journal of Experimental Bot. 74:352-363. https://doi.org/10.1093/jxb/erac408

Li D, Bai D, Tian Y, Li YH, Zhao C, Wang Q, Guo S, Gu Y, Luan X, Wang R, Yang J, Hawkesford MJ, Schnable JC, Jin X, Qiu LJ. 2023. Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean. Journal of Integrative Plant Biology. 65:117-132. https://doi.org/10.1111/jipb.13380

Magris G, Foria S, Ciani S, Santra DK, Polenghi O, Cerne V, Morgante M, Gaspero GD. 2023. Targeted sequencing of the Panicum miliaceum gene space and genotyping of variant sites from population genetics studies, combined in a single assay, as a tool for broomcorn millet marker assisted breeding. Euphytica. 219(10):102. https://doi.org/10.1007/s10681-023-03228-8

Ray MK, Santra DK, Mishra PK, Das S. 2023. Indigenous Lakadong turmeric of Meghalaya and its future prospects. J Applied Biol and Biotech. 11:133-142. https://doi.org/10.7324/jabb.2023.11516-1

Sahay S, Grzybowski M, Schnable JC, Glowacka K. 2023. Genetic control of photoprotection and photosystem II operating efficiency in plants. New Phytologist. 239(3):1068-1082. https://doi.org/10.1111/nph.18980

Sun G, Wase N, Shu S, Jenkins J, Zhou B, Torres-Rodriguez JV, Chen C, Sandor, L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Pedersen C, Gottilla T, Foltz A, Yu H, O’Malley R, Zhang C, Devos KM, Sigmon B, Yu B, Obata T, Schmulz J, Schnable JC. 2022. Genome of Paspalum vaginatum and the rolw of trehalose mediated autophagy in increasing maize biomass. Nature Communications. 13:7731. https://doi.org/10.1038/s41467-022-3557-8

Sun G, Yu H, Wang P, Lopez-Guerrero M, Mural RV, Mizero ON, Grzybowski M, Song B, van Kijk K, Schachtman DP, Zhang C, Schnable JC. 2023. A role for heritable transcriptomic variation in maize adaptation to temperate environments. Genome Biology. 24:55. https://doi.org/10.1186/s13059-023-02891-3

Wijewardane NK, Zhang H, Yang J, Schnable JC, Schachtman DP, Ge Y. 2023. A leaf-level spectral library to support high-throughput plant phenotyping: predictive accuracy and model transfer. J Exper Bot. 74:4050-4062. https://doi.org/10.1093/jxb/erad129

Xue Y, Ding Y, Wang Y, Wang X, Cao X, Santra DK, Chen L, Qiao Z, Wang R. 2023. Construction of DNA molecular identity card of core germplasm of broomcorn millet in China based on fluorescence SSR. Scientia Agricultura Sinica. 56(12):2249-2261. https://doi,org/10.3864/j.issn.0578-1752.2023.12.002

Zhang W, Danilova T, Zhang M, Ren S, Zhu X, Zhang Q, Zhong S, Kykes L, Fiedler J, Xu S, Frels K, Wegulo S, Boehm Jr J, Cai X. 2022. Cytogenetic and genomic characterization of a novel tall wheatgrass-derived Fhb7 allele integrated into wheat B genome. Theor and Appl Genet. 135:4409-4419. https://doi.org/10.1007/s00122-022-04228-3

North Dakota

Almeida LFA, Correndo A, Ross J, Licht M, Casteel S, Singh M, Naeve S, Vann R, Bais J, Kandel H, Lindsey L, Conley S, Kleinjan J, Kovacs P, Berning D, Hefley T, Reiter M, Hoshouser D, Ciampitti IA. 2023. Soybean yield response to nitrogen and sulfur fertilization in the United States: contribution of soil N and N fixation processes. European Journal of Agron. 145:126791. https://doi.org/10.1016/j.eja.2023.126791

Mathew J, Delavarpour N, Miranda C, Stenger J, Zhang Z, Aduteye J, Flores P. 2023. A novel approach to pod count estimation using a depth camera in support of soybean breeding applications. Sensors. 23(14):6506. https://doi.ort/10.3390/s23146506

Nonoy Bandillo, Hannah Worral, Shana Forster, Thomas Stefaniak, Lisa Piche, Andrew Ross, Shalu Jain, Julie Pasche, Audrey Kalil, Michael Wunsch, Malaika Ebert, Jiajia Rao, Michael Ostlie, Blaine Schatz, John Rickertsen, Cameron Wahlstrom, Meridith Miller, Justin Jacobs, Bryan Hanson, Glenn Martin, William Franck, Chengci Chen, and Kevin McPhee. 2022. Registration of ‘ND Victory’ green field pea. J Plant Reg. https://doi.org/10.1002/plr2.20266

Osorno JM, Simons KJ, Erfatpour M, Vander Wal AJ, Posch J, Grafton KF. 2023. Seed yield improvement in navy bean: Registration of ‘ND Polar’. J Plant Reg. 17(2):255-262. https://doi.org/10.1002/plr2.20284

Pull ZA, Gramig G, Hulke BS, Gossweiler A, Johnson B. 2023. First steps toward developing Lewis flax (Linum lewisii Parsh) as an agronomic crop. Sustainable Agriculture and Food Systems. 38:e38. https://doi.org/10.1017/S1742170523000340

Rahman M, Hoque A. 2023. Flax Breeding. In: You FM, Fofana B (eds) The Flax Genome. Compendium of Plant Genomes. Springer Cham. https://doi.org/10.1007/978-3-031-16061-5_4

Shaikh TM, Rahman M, Smith T, Anderson JV, Chao WS, Horvath DP. 2023. Homozygosity mapping identified loci and candidate genes responsible for freezing tolerance in Camelina sativa. The Plant Genome. 16(2):e20318. https://doi.org/10.1002/tpg2.20318

Simons KJ, Schroder S, Oladzad A, McClean PE, Conner RL, Penner WC, Stoesz DB, Osorno JM. 2022. Modified screening method of middle American dry bean genotypes reveals new genomic regions on Pv10 associated with anthracnose resistance. Front. in Plant Sci. 15:1015583. https://doi.org/10.3389/fpls.2022.1015583

Stefaniak TR, Miller J, Jones CR, Miller M, Yusuf M, Harder MA, Larsen JC, Schmitz CA, Carley D, Haagenson A, Thompson TE, Michaels C, Thill, Shannon LM. 2023. Polaris Gold: An attractive, yellow-fleshed tablestock cultivar with chipping potential. American Journal of Potato Research. 100:71-78. https://doi.org/10.1007/s12230-022-09896-x

Ohio

Arguello-Blanco MN, Sneller CH. 2023. The effect of cycles of genomic selection on the wheat (T. aestivum) genome. Theor Appl Genet. 136:70. https://doi.org/10.1007/s00122-023-04279-0

Asea G, Kwemoi DB, Sneller C, Kasozi CL, Das B, Musundire L, Makumbi D, Beyene Y and Prasanna BM. 2023. Genetic trends for yield and key agronomic traits in pre-commercial and commercial maize varieties between 2008 and 2020 in Uganda. Front. in Plant Sci. 14:1020667. https://doi.org/10.3389/fpls.2023.1020667

Fresnedo-Ramirez J, Anderson ES, D’Amico-Willman K, Gradziel TM. 2023. A review of plant epigenetics through the lens of almond. The Plant Genome. e20367. https://doi.org/10.1002/tpg2.20367

Fresnedo-Ramirez J, Anderson ES, D’Amico-Willman K, Gradziel TM. 2023. Epigenetic regulation in Almond. In Sanchez-Perez R, Fernandez MA, Martinez-Gomez P (eds). The Almond Tree Genome. Compendium of Plant Genomes. Springer. https://doi.org/10.1007/978-3-030-30302-0_5

Goggans ML, Bilbrey EA, Quiroz-Moreno CD, Francis DM, Jacobi SK, Kovac J, Cooperstone JL. 2022. Short-Term Tomato Consumption Alters the Pig Gut Microbiome toward a More Favorable Profile. Microbiology Spectrum. 10:6. https://doi.org/10.1128/spectrum.02506-22

Li B, Gschwend AR, Hovick SM, Guteck A, McHale L, Harrison SK, Regnier EE. 2022. Evolution of weedy giant ragweed (Ambrosia trifida): Multiple origins and gene expression variability facilitates weediness. Ecology and Evolution. 12:9590. https://doi.org/10.1002/ece3.9590

McCoy J, Martínez-Ainsworth N, Bernau V, Scheppler H, Hedblom G, Adhikari A, McCormick A, Kantar M, McHale L, Jardón-Barbolla L, Mercer KL, Baumler D. 2023. Population structure in diverse pepper (Capsicum spp.) accessions. BMC Res Notes. 16:20. https://doi.org/10.1186/s13104-023-06293-3

South Dakota

Brzozowski LJ, Campbell MT, Hu H, Yao L, Caffe M, Gutierrez L, Smith KP, Sorrells ME, Gore MA, Jannink JL. 2023. Genomic prediction of seed nutritional traits in biparental families of oat (Avena sativa). The Plant Genome. e20370. https://doi.org/10.1002/tpg2.20370

Caffe M, Hall L, Hall N, Bauer R, Kleinjan J, Graham C, Ingemansen JA, Turnipseed B, Krishnan P. 2023. Registration of oat cultivar ‘Rushmore’. J of Plant Reg. 17(2):247-254. https://doi.org/10.1002/plr2.20282

Casler MD, Lee D, Mitchell RB, Moore KJ, Adler PR, Sulc RM, Johnson KD, Kallenbach RL, Boe AR, Mathison RD, Cassida KA, Min D, Zhang Y, Ong RG, Sato TK. 2023. Biomass quality responses to selection for increased biomass yield in perennial energy grasses. BioEnergy Research. 16:877-885. https://doi.org/10.1007/s12155-022-10513-2

Wisconsin

Adak A, Murray SC, Calderón CI, Infante V, Wilker J, Varela JI, Subramanian N, Isakeit T, Ané JM, Wallace J, De Leon N, Johnson C. 2023. Genetic Mapping and Prediction for Novel Lesion Mimic in Maize Demonstrates Quantitative Effects from Genetic Background, Environment and Epistasis. Theor and Appl Genet. 136:155. https://doi.org/10.1007/s00122-023-04394-y

Branch CA, Tracy WF. 2023. Divergent selection for timing of vegetative phase change. Crop Sci. 63(4):2196-2204. https://doi.org/10.1002/csc2.21016

Colley MC, Dawson JC, McCluskey C, Myers JR, Tracy WF, Lammerts van Bueren ET. 2022. Exploring the emergence of participatory plant breeding in countries of the global North. The Journal of Agricultural Sci. https://doi.org/10.1017/S0021859621000782

Colley MC, Tracy WF, Lammerts van Bueren E, Diffley M, Almekinders C. 2022. How the seed of participatory plant breeding found its way in the world through adaptive management. Sustainability. 14:2132. https://doi.org/10.3390/su14042132

Kumar R, Brar MS, Kunduru B, Ackerman AJ, Yang Y, Luo F, Saski CA, Bridges WC, de Leon N, McMahan C, Kaeppler SM, Sekhon RS. 2023. Genetic architecture of source-sink-regulated senescence in maize. Plant Physiology. kiad460. https://doi.org/10.1093/plphys/kiad460

Lima DC, de Leon N, Kaeppler SM. 2023. Utility of anthesis-silking interval information to predict grain yield under water and nitrogen limited conditions. Crop Sci. 63(1):151-163. https://doi.org/10.1002/csc2.20854

McFarland FL, Collier R, Walter N, Martinell B, Kaeppler SM, Kaeppler HF. 2023. A key to totipotency: Wuschel-like homeobox 2a unlocks embryogenic culture response in maize (Zea mays L.). Plant Biotech Journal. 21(9):1860-1872. https://doi.org/10.1111/pbi.14098

Pankievicz CVS, Delaux PM, Infante V, Hirsch HH, Rajasekar S, Zamora P, Jayaraman D, Calderon CI, Bennett A, Ané JM. 2022. Nitrogen fixation and mucilage production on maize aerial roots is controlled by aerial root development and border cell functions. Front. in Plant Sci. 13:977056. https://doi.org/10.3389/fpls.2022.977056

Schoemaker DL, McFarland F, Marinell B, Michel KJ, Mathews L, O’Brian D, de Leon N, Kaeppler HF, Kaeppler SM. 2023. A practical method to improve the efficiency of pollination in maize breeding and genetics research. Crop Sci. https://doi.org/10.1002/csc2.21049

Van Gelder K, Oliveira-Filho ER, Messina CD, Venado RE, Wilker J, Rajasekar S, Ane JM, Amthor JS, Hanson AD. 2023. Running the numbers on plant synthetic biology solutions to global problems (2023). Plant Sci. 335:111815. https://doi.org/10.1016/j.plantsci.2023.111815

Varela JI, Miller ND, Infante V, Kaeppler SM, de Leon N, Spalding EP. 2022. A novel high-throughput hyperspectral scanner and analytical methods for predicting maize kernel composition and physical traits. Food Chem. 391:133264. https://doi.org/10.1016/j.foodchem.2022.133264

Wang G, Zhou J, Costa M, Kaeppler SM, Zhang Z. 2023. Plot-level maize early stage stand counting and spacing detection using advanced deep learning algorithms based on UAV imagery. Agronomy. 13(7):1728. https://doi.org/10.3390/agronomy13071728

Yactayo-Chang JR, Boehlein S, Beiriger RL, Resende Jr MFR, Bruton RG, Alborn HT, Romero M, Tracy WF, Block AK. 2022. The impact of post-harvest storage on sweet corn aroma. Phytochemistry Letters. 52:33-39. https://doi.org/10.1016/j.phytol.2022.09.001

09/19/2024

Illinois

No list submitted

Indiana

Colley, M., Dawson, J., Zystro, J., Hoagland, L., Liou, M., Myers, J., Silva, E., Simon, P., (in review). Influence of organic and conventional management systems on carrot performance and implications for organic plant breeding. Submitted to Crop Science

Jamjshidi, S., Murgia, T., Morales-Ona, A.G., Cerioli, T., Famoso, A.N., Cammarano, D., Wang, D.R. 2023. Modeling interactions of planting data end phenology in Louisiana rice under current and future climate scenarios. Crop Science

Jung, J., Fei, S., Tuinstra, T., Yang, Y., Wang, DR., Song, S., Gillan, J., Bhandari, M., Ibrahim, A., Zhao, L.,

Luis, M., Jaiswal, A., Mengiste, T., Myers, J., Hoagland, L., (in review). Identification of mechanisms mediating induced systemic resistant in wild vs. domesticated tomato using RNA-seq. Submitted to Phytopathology

Maynard, E., Guan, W., Langenhoven, P., Hoagland, L., 2024. Vegetable seedling performance in commercial organic growing media. HortTechnology.

Swetnam, T., Barker, B., Jung, M., Hancock, B., 2024. Data to science: an open-source on-line platform for managing, visualizing and published UAS data. Proceedings of the Autonmous Air and Ground Sensing Systems for Agricultural Optimization and Phenotyping

Wang, D, Jamshidi, S., Han, R., McCouth, S.R., 2024. Positive effects of public breeding on U.S. rice yields under future climate scenarios. PNAS DOI: 10.1073/pnas.2309969121

Pathak, H., Warren, CJ., Buckmaster, DR, Wang, DR, 2024. Advancing adaptive agricultural strategies: unraveling impacts of climate change and soils on corn productivity using APSIM. Proceedings of the 16^th International Conference on Precision Agriculture

Powlen, J., Bigelow, C., Vidanza, A., Hoagland, L. 2024. Turf-type tall fescue brown path resistance as influenced by morphological characteristics. Plant Health Progress https://doi.org/10.1094/PHP-10-23-0082-RS

Vargas-Rojas, L., Ting, T., Rainey, K., Reynolds, M., Wang, DR., 2024. AgTC and AgETL: open-source tools to enhance data collection and management for plant science. Frontiers in Plant Science https://doi.org/10.3389/fpls.2024.1265073

Zhang, L., Hoagland, L., Yang, Y., Becchi, P., Sobolev, A., Scioli, G., La Nasa, J., Modugno, F. Lucini, L., (in review). The combination of hyperspectral imaging, untargeted metabolomics and lipidomis highlights a coordinated stress-related biochemical reprogramming triggered by polyethylene nanoparticles in lettuce. Submitted to Science of the Total Environment

Other publications from Purdue:

Arora, A., Das, AK, Dixit, Y, Singh, SB, Sekhar, JC, Ravikesavan, R., Tuinstra, MR., 2024. Genetic diversity analysis and heterotic grouping of Indiana white maize inbred lines using combining ability and SNP markers. Crop Science https://doi.org/10.1002/csc2.21201

Aviles, C., Toledo, M, Crawford, MM, Tuinstra, MR. 2024. Integrating multi-modal remote sensing, deep learning, and attention mechanisms for yield prediction in plant breeding experiments. Frontiers in Plant Science 15, https://doi.org/10.3389/fpls.2024.1408047

Escamilla DM, Dietz N, Bilyeu K, Hudson K, Rainey KM. Genome-wide association study reveals GmFulb as candidate gene for maturity time and reproductive length in soybeans (Glycine max). PLoS One. 2024 Jan 19;19(1):e0294123. doi: 10.1371/journal.pone.0294123.

Nepal, N., Condori-Apfata, J.A., Gaire, R., Anco, M.E., Scofield, S. Zhang, C., Mohammadi, M., 2023. Phenotypic and genotypic resources for the USDA quinoa (Chenopodium quinoa) genebank accessions. Crop Science DOI: 10.1002/csc2.21037

Iowa

Foster, T., Kloiber-Maitz, M., Gilles, L., Frei, U.K., Pfeffer, S., Chen, Y.-R., Dutta, S., Arun, Hufford, M., Lübberstedt T. (2024) Fine-mapping of a major QTL for spontaneous haploid genome doubling (qshgd1) in maize. Theor. Appl. Genet. 137:117 https://doi.org/10.1007/s00122-024-04615-y

Foster, T.L., Frei, U.K., Fakude, M., Krause, M.D., Dutta, S., Tracy, W.F., Resende Jr., M.F.R., Lübberstedt^,T. (2025) Genome-wide association study of haploid male fertility in sweet corn. Theor Appl. Genet. (submitted)

Millet

Online Oral presentations:

Di Salvo, J.I; Singh, A.K. “Millet Characterization for Iowa growing conditions”. Webinar presentation. North American Millet Alliance (NAMA), April 19th, 2023.

Field Days:

Di Salvo, J.I; Panthulugiri, S.; Singh, A.K. Iowa Organic Association, Overview of small millet breeding efforts in Iowa. June, 21st 2024

Di Salvo, J.I; Panthulugiri, S., Singh, A.K. AGRON279, Undergraduate class at Iowa State University, Overview of small millet breeding efforts in Iowa. August, 15th 2024

Di Salvo, J.I; Panthulugiri, S.; Scott, B.W. R.F. Baker Center Field tour. August 22nd, 2024.

Extension and outreach:

Panthulugiri, S.; Di Salvo, J.I. Plant the Moon Challenge, Tuesday, May 21st, 2024

Poster presentations:

Di Salvo, J.I; Scott, B; Hicks, J; Brenner, D; Singh, A.K. “Finger millet Characterization in Iowa”. Poster. Annual Meeting, ASA-CSSA-SSSA, November 1st, 2023. St Louis, Missouri

Di Salvo, J.I; Scott, B; Dunn, B; Hicks, J; Brenner, D; Singh, A.K. Finger millets (Eleusine Coracana) in Iowa. Poster. X R.F Baker Plant Breeding Symposium. March 24th, 2023. Ames, Iowa.

Kansas

Correndo, Y.S., A.J.P. Carcedo, M.A. Secchi, M.J. Stamm, P.V.V. Prasad, S. Lira, C.D. Messina, and I.A. Ciampitti. 2024. Identifying environments for canola oil production under diverse seasonal crop water stress levels. Agric. Water Management. 302:108996. https://doi.org/10.1016/j.agwat.2024.108996.

Menke, E., C. Steketee, Q. Song, W. Schapaugh, T. Carter, B. Fallen, and Z. Li. 2024. Genetic mapping reveals the complex genetic architecture controlling slow canopy wilting in soybean. Theoretical and Applied Genetics. 137:107. https://doi.org/10.1007/s00122-024-04609-w.

Peirce, E. B. Evers, Z. Winn, W. Raupp, M. Guttieri, A. Fritz, J. Poland, E. Akhunov, S. Haley, E. Mason, Esten, and P. Nachappa. 2024. Identifying novel sources of resistance to wheat stem sawfly in five wild wheat species. Pest Management Science. 80. 10.1002/ps.8008.

Zhang, G., A. Fritz, Y. Li, R. Bowden, M. Chen, J. Rupp, and Y. Jin. 2024. Registration of ‘KS Big Bow’ hard white winter wheat. Journal of Plant Registrations. 18. 10.1002/plr2.20354.

Michigan

NC7 Participants

Shrote R and Thompson AM. 2024. PyBrOpS: a Python package for breeding program simulation and optimization for multi-objective breeding. G3. doi: https://doi.org/10.1101/2023.02.10.528043

Torres-Rodriguez JV, Li Delin, Turkus J, Newton L, Davis J, Lopez-Corona L, Ali W, Sun G, Mural RV, Grzybowski MW, Thompson AM, Schnable JC. 2024. Population level gene expression can repeatedly link genes to functions in maize. The Plant Journal. https://doi.org/10.1111/tpj.16801

Jin H, Tross MC, Tan R, Newton L, Mural RV, Yang J, Thompson AM, Schnable JC. 2024. Imitating the ‘breeder’s eye”: predicting grain yield from measurements of non-yield traits. The Plant Phenome Journal. https://doi.org/10.1101/2023.11.29.568906

Ying S, Webster B, Gomez-Cano L, Shivaiah K, Wang Q, Newton L, Grotewold E, Thompson AM, Lundquist PK. 2023. Multiscale Physiological Responses of Maize Hybrids to Nitrogen Supplementation. Plant Physiology195(1):879-899 899 https://doi.org/10.1093/plphys/kiad583

Lopez-Cruz M, Aguate FM, Washburn JD, de Leon Gatti N, Kaeppler SM, Lima D, Tan R, Thompson AM, De La Bretonne LW, de los Campos G. 2023. Leveraging Data from the Genomes to Fields Initiative to Investigate GxE in Maize in North America. Nature Communications 14(1), 6904 10.1038/s41467-023-42687-4

Lin YC, Mansfeld BN, Tang X, Colle M, Chen F, Weng Y, Fei Z, Grumet R. 2023. Identification of QTL associated with resistance to Phytophthora fruit rot in cucumber (Cucumis sativus L.). Frontiers in Plant Science 14. https://doi.org/10.3389/fpls.2023.1281755

Goeckeritz CZ, Grabb C, Grumet R, Iezzoni AF, Hollender CA. 2024. Genetic factors acting prior to dormancy in sour cherry influence bloom time the following spring. Journal of Experimental Botany, 75(14), 4428–4452.

Rett-Cadman S, Weng Y, Fei Z, Thompson AM, Grumet R. 2024. Genome-Wide Association Study of Cuticle and Lipid Droplet Properties of Cucumber (Cucumis sativus L.) Fruit. Int. J. Mol. Sci. 25(17), 9306.

Other Researchers

Kuwabo K, Hamabwe SM, Kachapulula P, Cichy K, Parker T, Mukuma C, et al. (2023) Genome-wide association analysis of anthracnose resistance in the Yellow Bean Collection of Common Bean. PLoS ONE 18(11): e0293291. https://doi.org/10.1371/journal.pone.0293291

Porch, T. G., Rosas, J. C., Cichy, K., Lutz, G. G., Rodriguez, I., Colbert, R. W., Demosthene, G., Hernández, J. C., Winham, D. M., & Beaver, J. S. (2024). Release of tepary bean cultivar ‘USDA Fortuna’ with improved disease and insect resistance, seed size, and culinary quality. Journal of Plant Registrations, 18, 42–51.

Wang, W., & Cichy, K. A. (2024). Genetic variability for susceptibility to seed coat mechanical damage and relationship to end-use quality in kidney beans. Crop Science, 64, 200–210.

Miklas, P. N., Soler-Garzón, A., Pastor-Corrales, M., & Cichy, K. A. (2024). Registration of ‘USDA Diamondback’ slow-darkening pinto bean. Journal of Plant Registrations, 18, 52–60.

Awale, H. E., Wiersma, A. T., Wright, E. M., Buell, C. R., Kelly, J. D., Cichy, K. A., & Haus, M. J. (2024). Anthracnose and bean common mosaic necrosis virus resistance in wild and landrace Phaseolus vulgaris (L.) genetic stocks. Crop Science, 64, 2116–2125.

Sadohara, R., Cichy, K., Fourie, D., Msolla, S. N., Song, Q., Miklas, P., & Porch, T. (2024). Andean common bean bulk breeding lines selected on multiple continents exhibit broad genetic diversity and stress adaptation. Crop Science, 1–22. https://doi.org/10.1002/csc2.21309

Izquierdo P, Sadohara R, Wiesinger J, Glahn R, Urrea C, Cichy K. 2024. Genome-wide association and genomic prediction for iron and zinc concentration and iron bioavailability in a collection of yellow dry beans. Front. Genet. Vol 15. DOI: 10.3389/fgene.2024.1330361

Hauri, K.C., Schilmiller, A.L., Darling, E. et al. 2024. Constitutive Level of Specialized Secondary Metabolites Affects Plant Phytohormone Response to Above- and Belowground Herbivores. J Chem Ecol. https://doi.org/10.1007/s10886-024-01538-2

Anglin Noelle L. , Chavez Oswaldo , Soto - Torres Julian , Gomez Rene , Panta Ana , Vollmer Rainer , Durand Marisol , Meza Charo , Azevedo Vania , Manrique - Carpintero Norma C. , Kauth Philip , Coombs Joesph J. , Douches David S. , Ellis David. 2024. Promiscuous potato: elucidating genetic identity and the complex genetic relationships of a cultivated potato germplasm collection. Front. Plant Sci. 15. https://doi.org/10.3389/fpls.2024.1341788

Ames, M., Hamernik, A., Behling, W., Douches, D. S., Halterman, D. A., & Bethke, P. C. (2024). A survey of the Sli gene in wild and cultivated potato. Plant Direct, 8(5), e589. doi: 10.1002/pld3.589

Xiaobiao Zhu, Airu Chen, Nathaniel M Butler, Zixian Zeng, Haoyang Xin, Lixia Wang, Zhaoyan Lv, Dani Eshel, David S Douches, Jiming Jiang. 2024.Molecular dissection of an intronic enhancer governing cold-induced expression of the vacuolar invertase gene in potato, The Plant Cell, 36(5): 1985–1999.

Behling, W., Coombs, J., Collins, P., Douches, D. 2024. An Analysis of Inter-Endosperm Balance Number Crosses with the Wild Potato Solanum verrucosum. Am. J. Potato Res. 101, 34–44.

Fang C, Hamilton JP, Vaillancourt B, Wang Y-W, Wood JC, Deans NC, Scroggs T, Carlton L, Mailloux K, Douches DS, Nadakuduti SS, Jiang J and Buell CR (2023) Cold stress induces differential gene expression of retained homeologs in Camelina sativa cv Suneson. Front. Plant Sci. 14:1271625.

MacKenzie Jacobs, Samantha Thompson, Adrian E Platts, Melanie J A Body, Alexys Kelsey, Amanda Saad, Patrick Abeli, Scott J Teresi, Anthony Schilmiller, Randolph Beaudry, Mitchell J Feldmann, Steven J Knapp, Guo-qing Song, Timothy Miles, Patrick P Edger. 2023. Uncovering genetic and metabolite markers associated with resistance against anthracnose fruit rot in northern highbush blueberry. Horticulture Research, Volume 10, Issue 10. https://doi.org/10.1093/hr/uhad169

Makenzie E Mabry, R Shawn Abrahams, Ihsan A Al-Shehbaz, William J Baker, Simon Barak, Michael S Barker, Russell L Barrett, Aleksandra Beric, Samik Bhattacharya, Sarah B Carey, Gavin C Conant, John G Conran, Maheshi Dassanayake, Patrick P Edger, Jocelyn C Hall, Yue Hao, Kasper P Hendriks, Julian M Hibberd, Graham J King, Daniel J Kliebenstein, Marcus A Koch, Ilia J Leitch, Frederic Lens, Martin A Lysak, Alex C McAlvay, Michael T W McKibben, Francesco Mercati, Richard C Moore, Klaus Mummenhoff, Daniel J Murphy, Lachezar A Nikolov, Michael Pisias, Eric H Roalson, M Eric Schranz, Shawn K Thomas, Qingyi Yu, Alan Yocca, J Chris Pires, Alex E Harkess. 2024. Complementing model species with model clades. The Plant Cell, Volume 36, Issue 5. Pages 1205–1226.

Brose, J., Hamilton, J. P., Schlecht, N., Zhao, D., Mejía-Ponce, P. M., Cruz-Pérez, A., Vaillancourt, B., Wood, J. C., Edger, P. P., Montes-Hernandez, S., de Rosas, G. O., Hamberger, B., Cibrian-Jaramillo, A., & Buell, C. R. 2024. Chromosome-scale Salvia hispanica L. (Chia) genome assembly reveals rampant Salvia interspecies introgression. The Plant Genome, 17, e20494

Jordan R Brock, Kevin A Bird, Adrian E Platts, Fabio Gomez-Cano, Suresh Kumar Gupta, Kyle Palos, Caylyn E Railey, Scott J Teresi, Yun Sun Lee, Maria Magallanes-Lundback, Emily G Pawlowski, Andrew D L Nelson, Erich Grotewold, Patrick P Edger. 2024. Exploring genetic diversity, population structure, and subgenome differences in the allopolyploid Camelina sativa: implications for future breeding and research studies, Horticulture Research. uhae247 https://doi.org/10.1093/hr/uhae247

Todd, O. E., Patterson, E. L., Westra, E. P., Nissen, S. J., Araujo, A. L. S., Kramer, W. B., Dayan, F. E., & Gaines, T. A. 2024. Enhanced metabolic detoxification is associated with fluroxypyr resistance in Bassia scoparia. Plant Direct, 8(1), e560. DOI: 10.1002/pld3.560

Borgato, E.A., Ohadi, S., Brunharo, C.A.C.G., Patterson, E.L. & Matzrafi, M. 2024. Amaranthus palmeri S. Watson reproduction system: Implications for distribution and management strategies. Weed Research, 1–13. https://doi.org/10.1111/wre.12626

Serim AT and Patterson EL. 2024. Response of conventional sunflower cultivars to drift rates of synthetic auxin herbicides. Peer J 12:e16729. doi: 10.7717/peerj.16729

Montgomery, J., Morran, S., MacGregor, D.R. et al. 2024. Current status of community resources and priorities for weed genomics research. Genome Biol 25, 139.

Yi-Hsuan Chu, Yun Sun Lee, Fabio Gomez-Cano, Lina Gomez-Cano, Peng Zhou, Andrea I Doseff, Nathan Springer, Erich Grotewold. 2024. Molecular mechanisms underlying gene regulatory variation of maize metabolic traits, The Plant Cell, Volume 36, Issue 9. Pages 3709–3728.

Sang Y, Zhao H, Liu X, Yuan C et al. 2023. Genome-wide association study of powdery mildew resistance in cultivated soybean from Northeast China. Front. Plant Sci. 14.

Sang Y, Liu X, Yuan C, Yao T, Li Y, Wang D, Zhao H, Wang Y. 2023. Genome-wide association study on resistance of cultivated soybean to Fusarium oxysporum root rot in Northeast China. BMC Plant Biology 23(1): 625.

Liu, Z., Li, H., Wang, X., Zhang, Y., Gou, Z., Zhao, X., … Qiu, L. (2022). QTL for yield per plant under water deficit and well-watered conditions and drought susceptibility index in soybean (Glycine max (L.) Merr.). Biotechnology & Biotechnological Equipment, 37(1), 92–103.

Lin, F., Salman, M., Zhang, Z. et al. 2024. Identification and molecular mapping of a major gene conferring resistance to Phytophthora sansomeana in soybean ‘Colfax’. Theor Appl Genet 137, 55.

Bahmani, K., Akbari, A., Izadi Darbandi, A. et al. 2023. Development of high-yielding fennel synthetic cultivars based on polycross progeny performance. Agric Res 12, 357–363.

Minnesota

Tork, David G., Neil O. Anderson, Donald L. Wyse, and Kevin J. Betts. 2022a. Controlled Freezing Studies as a Corollary Selection Method for Winterhardiness in Perennial Flax. Crop Science 62 (5): 1734–57.

Tork, David G., Neil O. Anderson, Donald L. Wyse, and Kevin J. Betts. 2022b. Ideotype Selection of Perennial Flax (Linum Spp.) for Herbaceous Plant Habit Traits. Agronomy (Basel, Switzerland) 12 (12): 3127.

Tork, D. G., Neil O. Anderson, Donald L. Wyse, and K. J. Betts. 2023. “Selection of Perennial Flax (Linum Spp.) for Yield and Reproductive Traits for the Oilseed Ideotype.” Agronomy (Basel, Switzerland) 14 (1): 99.

Missouri

Ali, A, C Wan, M Lin, S Flint-Garcia, B Vardhanabhuti, P Somavat. 2024. Microencapsulation of phenolic compounds extracted from purple corn (Zea mays L.) pericarp by spray-drying using different encapsulating materials. International Journal of Biological Macromolecules. 272:132938. https://doi.org/10.1016/j.ijbiomac.2024.132938

Kumar, R, J Agliata, C Wan, S Flint-Garcia, MN Salazar-Vidal, A Mustapha, J Cheng, P Somavat. 2024. Evaluation of dry milling characteristics and polyphenolic contents of fourteen conventionally bred colored corn varieties for value-added coproducts recovery. Industrial Crops & Products. 215:118600. https://doi.org/10.1016/j.indcrop.2024.118600

Lima, DC, A Castro Aviles, RT Alpers, A Perkins, DL Schoemaker, M Costa, KJ Michel, S Kaeppler, D Ertl, MC Romay, JL Gage, J Holland, T Beissinger, M Bohn, E Buckler, J Edwards, S Flint-Garcia, MA Gore, CN Hirsch, JE Knoll, J McKay, R Minyo, SC Murray, J Schnable, RS Sekhon, MP Singh, EE Sparks, P Thomison, A Thompson, M Tuinstra, J Wallace, JD Washburn, T Weldekidan, W Xu, N de Leon. 2023. 2020-2021 field seasons of Maize GxE project within the Genomes to Fields Initiative. BMC Res Notes. 16: 219. https://doi.org/10.1186/s13104-023-06430-y

Lopez-Cruz, M, FM Aguate, JD Washburn, N De Leon Gatti, SM Kaeppler, D Lima, R Tan, A Thompson, LW De La Bretonne, G De Los Campos. 2023. Leveraging data from the genomes-to-fields initiative to investigate genotype-by- environment interactions in maize in North America. Nature Communications. 14. Article 6904. https://doi.org/10.1038/s41467-023-42687-4

Oliver, S, A Yobi, S Flint-Garcia, R Angelovici. 2024. Reducing acrylamide formation potential by targeting free asparagine accumulation in seeds. J. Agric. Food Chem. 72:6089–6095. https://doi.org/10.1021/acs.jafc.3c09547

Sheoran, SS, B Vardhanabhuti, K Bilyeu, S Flint-Garcia, C Wan, P Somavat. 2024. Development of a novel, small scale cold screw press protocol for rapid soybean processing and coproduct evaluation. Food and Bioproducts Processing. Food and Bioproducts Processing 146:89–102. https://doi.org/10.1016/j.fbp.2024.05.004

Washburn, JD, HF LaFond, MC Lapadatescu, AE Pereira, M Erb, BE Hibbard. 2023. GWAS analysis of maize host plant resistance to western corn rootworm (Coleoptera: Chrysomelidae) reveals candidate small effect loci for resistance breeding. Journal of Economic Entomology. 116(6):2184–2192. https://doi.org/10.1093/jee/toad181

Woore, MS, S Flint-Garcia, JB Holland. 2024. Phenotypic characterization of southeastern United States open-pollinated maize landraces. Crop Science. 64:772-787. https://doi.org/10.1002/csc2.21198

De Meyer, E, E Prenger, A Mahmood, M da Fonseca Santos, G Chigeza, Q Song, L Mwadzingeni, R Mukaro, M Chibanda, G Mabuyaye, D Diers, A Scaboo. 2024. Evaluating genetic diversity and seed composition stability within Pan-African Soybean Variety Trials. Crop Science. Accepted.

Usovsky, M, VA Gamage, CG Meinhardt, N Dietz, M Triller, P Basnet, JD Gillman, KD Bilyeu, Q Song, B Dhital, A Nguyen, MG Mitchum, AM Scaboo. 2023. Loss-of-function of an α-SNAP gene confers resistance to soybean cyst nematode. Nature Communications. 14:7629

Kwon, KM, JPG Viana, KKO Walden, M Usovsky, AM Scaboo, ME Hudson, MG Mitchum. 2024. Genome scans for selection signatures identify candidate virulence genes for adaptation of the soybean cyst nematode to host resistance. Molecular Ecology. 33:e17490.

Arifuzzaman, M, S Mamidi, A Sanz-Saez, H Zakeri, A Scaboo, FB Fritschi. 2023. Identification of loci associated with water use efficiency and symbiotic nitrogen fixation in soybean. Frontiers in Plant Science. 14: 1271849

Nebraska

Sun G, Yu H, Wang P, Lopez-Guerrero MG, Mural RV, Mizero ON, Grzybowski M, Song B, van Dijk K, Schachtman DP, Zhang C, Schnable JC (2023) A role for heritable transcriptomic variation in maize adaptation to temperate environments. Genome Biology doi: 10.1186/s13059-023-02891-3 bioRxiv doi: 10.1101/2022.01.28.478212

Grzybowski M, Mural RV, Xu G, Turkus, J, Yang Jinliang, Schnable JC (2023) A common resequencing-based genetic marker dataset for global maize diversity. The Plant Journal doi: 10.1111/tpj.16123 Cover Article, March 2023 Research Highlight in The Plant Journal doi: 10.1111/tpj.16123

Wijewardane NK, Zhang H, Yang J, Schnable JC, Schachtman DP, Ge Y (2023) A leaf-level spectral library to support high throughput plant phenotyping: Predictive accuracy and model transfer. Journal of Experimental Botany doi: 10.1093/jxb/erad129

Sahay S, Grzybowski M, Schnable JC, Glowacka K (2023) Genetic control of photoprotection and photosystem II operating efficiency in plants. New Phytologist doi: 10.1111/nph.18980

Yang, T. Zhao, H. Cheng, and J. Yang (2023). Microbiome-enabled genomic selection improves prediction accuracy for nitrogen-related traits in maize, G3, 2023.

Palali Delen, G. Xu, J. Velazquez-Perfecto, J. Yang (2023). Estimating the genetic parameters of yield-related traits under different nitrogen conditions in maize, Genetics, 2023.

Palali Delen, J. Lee, J. Yang (2023). Improving the metal composition of plants for reduced Cd and increased Zn content: molecular mechanisms and genetic regulations, Cereal Research Communications, 2023.

Joshi, D.C., S. Sood, H. Kudapa, M. Zhou, and D. K. Santra (2023). Editorial: Trait mining and genetic enhancement of millets and potential crops: modern prospects for ancient grains. Front. Plant Sci., 14: p.1-3. https://doi.org/10.3389/fpls.2023.1291893

Magris, G., Foria S., Ciani S., Santra, D. K., Polenghi O. Cerne V., Morgante M., and Gaspero G. D. (2023). Targeted sequencing of the Panicum miliaceum gene space and genotyping of variant sites from population genetics studies, combined in a single assay, as a tool for broomcorn millet assisted breeding. Euphytica 219 (10), 102. https://doi.org/10.1007/s10681-023-03228-8

Ray, M.K., Santra D.K., Mishra, P.K., Das, S. (2023). Indigenous Lafadong turmeric of Meghalaya and its future prospects. J App Biol. Biotech. 11516-1. http://doi.org/10.7324/JABB.2023.11516-1

Xue Y., Ding Y., Wang Y., Wang X., Cao X., Santra D. K., Chen L., Qiao Z., and Wang R. (2023). Construction of DNA Molecular Identity Card of Core Germplasm of Broomcorn Millet in China Based on Fluorescence SSR. Scientia Agricultura Sinica. 56(12):2249-2261. doi: 10.3864/j.issn.0578-1752.2023.12.002.

Khound, R., Mathivanan, R.K., Santra, D.K. (2023). Proso Millet Neuroeconomics for Human Health and Nutritional Security. In: Kole, C. (eds) Compendium of Crop Genome Designing for Nutraceuticals. Springer, Singapore (Book chapter). https://doi.org/10.1007/978-981-19-3627-2_10-1

Linders KM, Santra D, Schnable JC, Sigmon B (2024) Variation in leaf chlorophyll concentration in response to nitrogen application across maize hybrids in contrasting environments. microPublication Biology doi: 10.17912/micropub.biology.001115

Jin H, Tross MC, Tan R, Newton L, Mural RV, Yang J, Thompson AM, Schnable JC (2024) Imitating the “breeder’s eye”: predicting grain yield from measurements of non-yield traits. The Plant Phenome Journal doi: 10.1002/ppj2.20102 bioRxiv doi: 10.1101/2023.11.29.568906

Tross MC, Grzybowski M, Jubery TZ, Grove RJ, Nishimwe AV, Torres-Rodriguez JV, Sun G, Ganapathysubramanian B, Ge Y, Schnable JC (2024) Data driven discovery and quantification of hyperspectral leaf reflectance phenotypes across a maize diversity panel. The Plant Phenome Journal doi: 10.1002/ppj2.20106 bioRxiv doi:10.1101/2023.12.15.571950

Torres-Rodriguez JV, Li D, Turkus J, Newton L, Davis J, Lopez-Corona L, Ali W, Sun G, Mural RV, Grzybowski M, Zamft B, Thompson AM, Schnable JC (2024) Population level gene expression can repeatedly link genes to functions in maize. The Plant Journal 10.1111/tpj.16801 bioRxiv doi: 10.1101/2023.10.31.565032

Sahay S, Grzybowski M, Schnable JC, Glowacka K (2024) Genotype-specific nonphotochemical quenching responses to nitrogen deficit are linked to chlorophyll a to b ratios. Journal of Plant Physiology doi: 10.1016/j.jplph.2024.154261

Sahay S, Shrestha N, Moura Dias H, Mural RV, Grzybowski M, Schnable JC, Glowacka K Comparative GWAS identifies a role for Mendel’s green pea gene in the nonphotochemical quenching kinetics of sorghum, maize, and arabidopsis. The Plant Journal (Accepted) bioRxiv doi: 10.1101/2023.08.29.555201

North Dakota

Ajit Williams, Zachary Brym, Jason Griffin, Kurt Thelen, Chengci Chen, Jamie Crawford, Burton Johnson, Alyssa Collins, Karla Gage, Mitchell Richmond, John Fike, Heather Darby, David Gang, Haleigh Ortmeier-Clarke, Rodrigo Werle, Shelby Ellison, and Bob Pearce. 2023. Comparing Agronomic Performance of Industrial Hemp Varieties for Suitable Production in The United States. Agron. J.

Almeida LFA, Correndo A, Ross J, Licht M, Casteel S, Singh M, Naeve S, Vann R, Bais J, Kandel H, Lindsey L, Conley S, Kleinjan J, Kovacs P, Berning D, Hefley T, Reiter M, Hoshouser D, Ciampitti IA. 2023. Soybean yield response to nitrogen and sulfur fertilization in the United States: contribution of soil N and N fixation processes. European Journal of Agronomy 145:126791. https://doi.org/10.1016/j.eja.2023.126791

Brooke, M.J., Svyantek, A.W., Stenger, J., Collin, A., & Hatterman-Valenti H. (2023). Influence of 'Atlantic' and 'Dakota Pearl' mother plants exposed to sublethal glyphosate and dicamba on daughter plants. American Journal of Potato Research, 100(4), 314-323. https://doi.org/10.1007/s12230-023-09921-7

Chao, W.S., J.V. Anderson, X. Li, R.W. Gesch, M.T. Berti, and D.P. Horvath. 2023. Overwintering camelina and canola/rapeseed show promise for improving integrated weed management approaches in the upper Midwestern U.S. Plants 12, 1329. https://doi.org/10.3390/plants12061329

Ganaparthi, V.R., Adhikari, S., Marais, F., Neupane, B., Bisek, B. (2023). The use of PI 277012-derived Fusarium head blight resistance QTL in winter wheat breeding. Heliyon 9(4): e15103. https://doi.org/10.1016/j.heliyon.2023.e15103

Green, Andrew J. et al. Registration of ‘ND Frohberg’ hard red spring wheat. Journal of Plant Registrations (2023). https://doi:10.1002/plr2.20291

Peters Haugrud, A. R., Sharma, J. S., Zhang, Q., Green, A. J., Xu, S. S., & Faris, J. D. (2023). Identification of robust yield quantitative trait loci derived from cultivated emmer for durum wheat improvement. The Plant Genome, https://doi.org/10.1002/tpg2.202398

Roy, J., Soler‐Garzón, A., Miklas, P. N., Lee, R., Clevenger, J., Myers, Z., Korani, W., McClean, P. E. (2023). Integrating de novo QTL‐seq and linkage mapping to identify quantitative trait loci conditioning physiological resistance and avoidance to white mold disease in dry bean. The Plant Genome, 16(4), e20380.

Runhao Wang, Jason Axtman, Yueqiang Leng, Evan Salsman, Justin Hegstad, Jason D Fiedler, Steven Xu, Shaobin Zhong, Elias Elias, Xuehui Li. 2023. Recurrent selection for Fusarium head blight resistance in a durum wheat population. 30 December 2023 https://doi.org/10.1002/csc2.21179

Qian Y., M. Jiang, B. Zou, and D. Li. 2023. Core germplasm construction based on genetic and phenotypic diversity of Buffalograss (Bouteloua dactyloides (Nutt.) Columbus) from the Great Plains of America. Agronomy13, 1382. https://doi.org/10.3390/agronomy13051382

Zhang, W, Dai, W. 2023. In vitro plant regeneration of ‘Prelude’ red raspberry (Rubus idaeus L.). In Vitro Cell.Dev.Biol.-Plant 59, 461–466 (2023). https://doi.org/10.1007/s11627-023-10355-3

Ohio

Rachel Combs-Giroir, Manesh Shah, Hari Chhetri, Mallory Morgan, Erica Teixeira Prates, Alice Townsend, Mary E Phippen, Winthrop B Phippen, Daniel A Jacobson, Andrea R Gschwend. Morpho-physiological and transcriptomic responses of field pennycress to waterlogging. BioRxiv. https://doi.org/10.1101/2024.08.15.608142

Rachel Combs-Giroir, John Lagergren, Daniel A Jacobson, Andrea R Gschwend. Natural variation in physical responses to waterlogging across climate-diverse pennycress accessions. BioRxiv. https://doi.org/10.1101/2024.08.20.608872

Ligeyo, D.O., Saina, E., Awalla, B.J., Sneller, C., Chivasa, W., Musundire, L., Makumbi, D., Mulanya, M., Milic, D., Mutiga, S. and Lagat, A., 2024. Genetic trends in the Kenya Highland Maize Breeding Program between 1999 and 2020. Frontiers in Plant Science, 15, p.1416538. https://doi.org/10.3389/fpls.2024.1416538

Mukaro, R., Chaingeni, D., Sneller, C., Cairns, J.E., Musundire, L., Prasanna, B.M., Mavankeni, B.O., Das, B., Mulanya, M., Chivasa, W. and Mhike, X., 2024. Genetic trends in the Zimbabwe’s national maize breeding program over two decades. Frontiers in Plant Science, 15, p.1391926. https://doi.org/10.3389/fpls.2024.1391926

Rolling, W.R., Lake, R., Dorrance, A.E. and McHale, L.K., 2024. The Effects of Genetic Distance and Genetic Diversity on Genomic Prediction Accuracy for Soybean Quantitative Disease Resistance to Phytophthora sojae. PhytoFrontiers™, pp.PHYTOFR-07. https://doi.org/10.1094/PHYTOFR-07-23-0093-SC

D’Amico-Willman, K.M., Niederhuth, C.E., Sovic, M.G., Anderson, E.S., Gradziel, T.M. and Fresnedo-Ramírez, J., 2024. Hypermethylation and small RNA expression are associated with increased age in almond (Prunus dulcis [Mill.] DA Webb) accessions. Plant Science, 338, p.111918. https://doi.org/10.1016/j.plantsci.2023.111918

Ariyaratne, M., King-Smith, N., Fresnedo-Ramirez, J., Barker, D.J. and Cornish, K., 2023. CRISPR/Cas9-mediated Targeted Mutagenesis of Inulin Biosynthesis in Rubber Dandelion. Journal of the American Society for Horticultural Science, 148(6), pp.266-275. https://doi.org/10.21273/JASHS05311-23

Subode, S., Cho, J. and Francis, D.M., 2024. Quantitative Trait Mapping for Zebra-stem in Tomato Confirms a Genetic Cause Involving the Interaction of Unlinked Loci. HortScience, 59(7), pp.999-1006. https://doi.org/10.21273/HORTSCI17766-24

South Dakota

Alomair, AM^PHD, Boe, A, and Xu L. 2023. Field-based evaluation of root segment resprouted yellow-flowered alfalfa stand: Persistence and biomass. Proceedings of South Dakota Academy of Sciences. Vol. 102: 96. (Abstract)

Alomair, AM^PHD, Boe, A, and Xu L.2024. Genetic Resources for Enhanced Alfalfa Persistence: Utilizing Crown and Root Sprouting Traits in Germplasm Evaluation. Proceedings of South Dakota Academy of Sciences. Vol. 103: XX (Accepted)

Dhakal, R., Maimaitijiang, M., Chang, J., Caffe, M. 2023. Utilizing spectral, structural and Textural Features for Estimating Oat Above-Ground Biomass Using UAV-based Multispectral Data and Machine Learning. Sensors 2023, 23(24), 9708; https://doi.org/10.3390/s23249708

Ghimire, K., McIntyre, I., Caffe, M. 2024. Evaluation of Morpho-Physiological Traits of Oat (Avena sativa L.) under Drought Stress. Agriculture 2024, 14, 109. https://doi.org/10.3390/agriculture14010109

Ghimire, K., Peta, V., Bucking, H., Caffe, M. 2023. Effect of Non-Native Endophytic Bacteria on Oat (Avena sativa L.) Growth. Int. J. Plant Biol. 2023, 14(3), 827-844. https://doi.org/10.3390/ijpb14030062

Guidini, R., Jahani, M., Huang, K., Rieseberg, L., and Mathew, F. M. 2023. Genome-wide association mapping in sunflower (Helianthus annuus L.) reveals common loci and putative candidate genes for resistance to Diaporthe gulyae and D. helianthi causing Phomopsis stem canker. Plant Dis. 107(3):667-674. doi: 10.1094/PDIS-05-22-1209-RE

Okello, P., Solanki, S., Rafi, N., and Mathew, F. 2023. Sources of resistance, effect of maturity groups, and marker-trait associations associated with Fusarium graminearum causing root rot of soybean (Glycine max). Plant Health Prog. doi.org/10.1094/PHP-01-23-0011-RS

Rafi, N., Dominguez, M., Okello, P. N., and Mathew, F. M. 2024. No common candidate genes for resistance to Fusarium graminearum, F. proliferatum, F. sporotrichioides, and F. subglutanins in soybean (Glycine max L.) accessions from Maturity Groups 0 and I: Findings from Genome-Wide Association Mapping. Plant Dis. Online doi: 10.1094/PDIS-02-24-0477-RE.

Wisconsin

No list submitted