06/25/2008

Cardoso, F.F., J.P. Steibel, G.J.M. Rosa, C.W. Ernst, R.O. Bates and R.J. Tempelman. 2007. Assessment of different selective phenotyping strategies for genetical genomic studies with outbred F2 populations. J. Anim. Sci. 85(Suppl. 1):373.

Choi, I.S., R.O. Bates, V.D. Rilington, D.B. Edwards, N.E. Raney, M.E. Doumit and C.W. Ernst. 2007. Association between corticotropin-releasing hormone receptor 2 genotypes and meat quality traits in pigs. J. Anim. Sci. 85(Suppl. 2):65.

Edwards, D.B., C.W. Ernst, R.J. Tempelman, G.J.M. Rosa, N.E. Raney, M.D. Hoge and R.O. Bates. 2008. Quantitative trait loci mapping in an F2 Duroc x Pietrain resource population: I. Growth traits. J. Anim. Sci. 86:241-253.

Edwards, D.B., C.W. Ernst, N.E. Raney, M.E. Doumit, M.D. Hoge and R.O. Bates. 2008. Quantitative trait locus mapping in an F2 Duroc x Pietrain resource population: II. Meat quality traits. J. Anim. Sci. 86:254-266.

Ernst, C.W. and M.F. Rothschild. 2008. Porcine microarrays, QTL and bioinformatic resources. Invited presentation at the Swine in Biomedical Research Conference, San Diego, CA, April 2-3, 2008, http://nsrrc.missouri.edu/Meetings.asp.

Ernst, C.W., J.P. Steibel, A.M. Ramos, J.K. Lunney, M. Wysocki, D. Petry, R.K. Johnson, S.C. Fahrenkrug, R.J. Tempelman, M.F. Rothschild, B.S. Juneja, J. Garbe, C.G. Elsik, R.O. Bates, E.E. Helman, B.L. Varnes and M.E. Doumit. 2008. Assessment of the Swine Protein-Annotated Oligonucleotide Microarray and utility of the arrays for eQTL and transcriptional profiling studies. Plant and Animal Genome XVI Conference. San Diego, CA http://www.intlpag.org/16/abstracts/PAG16_W72_494.html.

Steibel, J.P., A.M. Ramos, R.J. Tempelman, R.O. Bates, M. Wysocki, J.K. Lunney, D. Petry, R.K. Johnson, S.C. Fahrenkrug, B.S. Juneja, J. Garbe, M.F. Rothschild, C.G. Elsik and C.W. Ernst. 2008. Assessment of the Swine Protein-Annotated Oligonucleotide Microarray by utilizing designed control features included on the array. Plant and Animal Genome XVI Conference. San Diego, CA. http://www.intlpag.org/16/abstracts/PAG16_P07a_732.html.

Alexander, L., Cutler, S., Rothschild, M. and Stahl, C. 2007. Dietary phosphorus and genetic background interact to affect growth performance and bone integrity in pigs. Proc. Midwest Animal Science Meeting, Des Moines IA.
Baas, T., and Schwab, C. 2007. Selection for Intramuscular Fat in Duroc Swine. Journal of Animal Science, 85: 77.

Baas, T.J., and Schwab C.R. 2007. ISU IMF Selection Project. Proc. 31st National Swine Improvement Federation Conference and Annual Meeting, Kansas City MO.

Bearson, S., Uthe, J., Wang, Y., Qu, L., Dekkers, J., Nettleton, D., and Tuggle, C. 2007. Associations of the porcine immune response and genetic polymorphisms with the shedding of Salmonella enterica serovar Typhimurium. Proc. Safepork, 7th International Symposium Epidemiology Control Foodborne Pathogens, Pork, Verona Italy.

Bunter, K., Cai, W., and Dekkers, J. 2007. Relationship of juvenile IGF-I with performance traits in lines selected for residual feed intake. Midwest Animal Science Meeting, Des Moines IA.

Burkett, J., Baas, T., Beitz, D., Schwab, Berry, N., and Zhang, S. 2007. Correlated Response in Fatty Acid Composition from Five Generations of Selection for Intramuscular Fat in Duroc Pigs. Journal of Animal Science, 85: 627.

Bushman, A., Baas, T., Schwab, C., and Stalder, K. 2007. Correlated Response in Litter Traits to Selection for Intramuscular Fat in Duroc Swine. Journal of Animal Science, 85: 61.

Cai, W., Casey, D., and Dekkers, J. 2007. Selection Response and Genetic Parameters for Residual Feed Intake in Yorkshire Swine. Journal of Animal Science, 86: 287-298.

Dekkers, J. 2007. Marker-Assisted Selection for Commercial Crossbred Performance. Journal of Animal Science, 85: 2104-2114.

Dekkers, J. 2007. Prediction of Response to Marker-Assisted and Genomic Selection Using Selection Index Theory. Journal of Animal Breeding and Genetics, 124: 331-341.

Dekkers, J., and Rothschild, M. 2007. New tools to make genetic improvement. London Swine Conference, London, ON, Canada. http://www.londonswineconference.ca/proceedings.htm

Fitzgerald, R., Jones, G., and Stalder, K. 2007. A comparison of intrauterine and cervical artificial insemination catheters on farrowing rate and litter size in artificially mated sows. Iowa State University Animal Industry Report.

Glenn, K., Ramos, A., and Rothschild, M. 2007. Analysis of FMO Genes and Off Flavor in Pork. Journal of Animal Breeding and Genetics, 124: 35-38.

Guimaraes, S., Rothschild, M., Stahl, C., and Lonergan, S. 2007. SNP Discovery, Expression and Association Analysis for the SDHD Gene in Pigs. Journal of Animal Breeding and Genetics, 124: 246-253.

Guimaraes, S., Stahl, C., Lonergan, S., Geiger, B., and Rothschild, M. 2007. Myostatin Promoter Analysis and Expression Pattern in Pigs. Livestock Production of Science, 112: 143-150.

Ha, Y., Do, K., Glenn, K., Rothschild, M., and Kim, K. 2007. Investigation of adiponectin gene in Korean native pigs. Proc. 2006 Fifteenth Korea Genome Organization Conference, Seoul Korea.

Habier, D., Fernando, R., and Dekkers, J. 2007. The Impact of Relationship Information Genome-Assisted Breeding Values. Genetics, 177: 2389-2397.

Hart, E., Caccamo, M., Harrow, J., Humphray, S., Gilbert, J., Trevanion, S., Hubbard, T., Rogers, J., and Rothschild, M. 2007. Lessons learned from the initial sequencing of the pig genome: comparative analysis of an 8 MB region of pig chromosome 17. Genome Biology 8: R168.

Jiang, Z., and Rothschild, M. 2007. Swine Genome Science Comes of Age. International Journal of Biology Science, 3: 129-131.

Jiang, Z., Pappu, S., and Rothschild, M. 2007. Hitting the Jackpot Twice: Identifying and Patenting Gene Tests Related to Muscle Lipid Accumulation for Meat Quality in Animals and Type 2 Diabetes/Obesity in Humans. Recent patents on DNA & Gene Sequences, 1: 100-111.

Knauer, M., Karriker, L., Baas, T., Johnson, C., and Stalder, K. 2007. An Evaluation of the Precision of Farm Reported Data Used to Make Health Decisions About Sows. Journal of American Veterinary Medicine Association, 231: 433-436.

Knauer, M., Stalder, K., Karriker, L., Baas, T., Johnson, C., Serenius, T., Layman, L., and McKean, J. 2007. A Descriptive Survey of Lesions from Cull Sows Harvested at Two Midwestern U.S. Facilities. Preventative Veterinary Medicine, 82: 198-212.

Knauer, M., Stalder, K., Karriker, L., McKean, J., Serenius, T., Baas, T., Johnson, C., and Layman, L. 2007. Characterization of U.S. cull sows. Iowa State University Animal Industry Report.

Knauer, M., Stalder, K., Serenius, T., Baas, T., Berger, P., Goodwin, R., and Mabry, J. 2007. Factors associated with sow stayability. Iowa State University Animal Industry Report.

Lkhagvadorj, S., Qu, L., Cai, W., Couture, O., Wang, Y., Anderson, L., Dekkers, J., Nettleton, D., and Tuggle, C. 2007. Use of transcriptional profiling and assessment of blood parameters to understand biological mechanisms controlling feed intake and efficiency in pigs. Iowa State University Animal Industry Report. A.S. leaflet R2233.

Lonergan, S., Stalder, K., Huff-Lonergan, E., Knight, T., Goodwin, R., Prusa, K., and Beitz, D. 2007. Influence of Lipid Content on Pork Sensory Quality within pH Classification. Journal of Animal Science, 85: 1074-1079.

Lunney, J., Bearson, S., Wang, Y., Uthe, J., Qu, L., Couture, O., Zhao, S., Kuhar, D., Nettleton, D., Dekkers, J., and Tuggle, C. 2007. Comparing the porcine response to infection with Salmonella enterica serovars of food safety (Typhimurium) and animal health (Choleraesuis) importance. Proc. International Symposium on Animal Genomics for Animal Health, Paris France.

Mote, B., Stalder, K., and Rothschild, M. 2007. Candidate genes for sow reproduction and productive life. Proc. Plant and Animal Genome XIV Meeting, San Diego CA.

Onteru, S., Fan, B., Mote, B., Serenius, T., Nikkilae, M., Stalder, K., and Rothschild, M. 2007. SNP discovery in genes affecting leg health traits in pigs. Proc. International Symposium on Animal Genomics for Animal Health, Paris France.

Pyiasatian, N., Fernando, R., and Dekkers, J. 2007. Genomic Selection for Marker-Assisted Improvement in Line Crosses. Theoretical Applied Genetics, 115: 665-674.

Qu, A., Rothschild, M., and Stahl, C. 2007. Effect of Dietary Phosphporus and Its Interaction with Genetic Background on Global Gene Expression in Porcine Muscle. Journal of Animal Breeding and Genetics, 124: 214-224.

Qu, L., Nettleton, D., and Dekkers, J. 2007. An A-optimal statistical design for post-hybridization washing procedures in Affymetrix microarray experiments. In Proc. Midwest Animal Science Meeting, Des Moines IA.
Ramos, A., Serenius, T., Stalder, K., and Rothschild, M. 2007. Phenotypic Correlations Among Processing Quality Traits of Fresh and Dry-Cured Hams. Meat Science, 77: 182-189.

Rothschild, M., Hu, Z., and Jiang, Z. 2007. Advances in QTL Mapping in Pigs. International Journal of Biol. Science, 3: 192-197.
Rothschild, M.F. 2007. An update on sequencing the swine genome: Opportunities and Challenges. Proc. of the National Swine Improvement Federation Annual Meeting, Nashville, TN.

Saxton, A., Stalder, K., and Simpson, R. 2007. Angus cow longevity estimates and relationship to production traits. University of Tennessee Animal Science Report.

Schinckel, A., Bates, R., See, T., Pfortmiller, R., and Stalder, K. 2007. Capturing genetic gains in productivity with heterosis. Page 14 in the Gene Link. National Swine Registry, West Lafayette IN.

Schinckel, A., Bates, R., See, T., Pfortmiller, R., and Stalder, K. 2007. Capturing genetic gains in productivity with heterosis. Page 179 in Proc. American Association of Swine Vet. Meeting, Orlando FL.

Schwab, C., Baas, T., Stalder, K., and Mabry, J. 2007. Deposition Rates and Accretion Patterns of Intramuscular Fat, Loin Muscle Area, and Backfat of Duroc Pigs Sired by Boars from Two Time Periods. Journal of Animal Science, 85: 1540.

Schwab, C., Mote, B., Rothschild, M., and Baas, T. 2007. Evaluation of Molecular Marker Information to Improve Efficacy of Selection for Iintramuscular Fat via Ultrasound in Duroc Swine. Journal of Animal Science, 85: 64.

Schwab, C., Mote, B., Rothschild, M., and Baas, T. 2007. Evaluation of molecular marker information on the efficacy of Duroc swine selected for intramuscular fat via ultrasound. Proc. Midwest Animal Science Meeting, Des Moines IA.

Schwab, C., Tait, R., Jr., and Baas, T. 2007. Genetic Parameter Estimates for Growth, Carcass Composition, and Meat Quality Traits in Duroc swine. Journal of Animal Science, 85: 625.

Serenius, T., and Stalder, K. 2007. Longevity is Impacted by Farm Management, Leg Conformation, Sows Own Prolificacy, and Sows Origin Parity and Genetics. Animal, 1: 745.

Serenius, T., Muhonen, P., and Stalder, K. 2007. Economic Values of Pork Production Related Traits in Finland. Agricultural Food Science, 16: 79-88.

Smith, A., Stalder, K., Serenius, T., Baas, T., and Mabry, J. 2007. Effect of Piglet Birth Weight and Weaning Weight on Weight 42 Days Post-Weaning. Journal of Swine Health Production, 15: 213.

Stalder, K. 2007. Benchmarking Series - Piglet Survival - A performance indicator. National Hog Farmer. Penton Media, Inc. Minneapolis, MN 55425. 52(no.5): 40-42.

Stalder, K. 2007. Breeding herd mortality - have we become complacent? PORK. Vance Publishing Corp., Lenexa, KS 66214 February Issue pp. 20-21.

Stalder, K. 2007. Parity distribution will affect your bottom line? National Hog Farmer. Penton Media, Inc. Minneapolis, MN 55425. 52(no.8): 32-33.

Stalder, K. 2007. The sow stall debate continues. National Hog Farmer. Penton Media, Inc. Minneapolis, MN 55425. 52(no.11):24-27.

Stalder, K. J. 2007. Benchmarking Series - How does your farm stack up? National Hog Farmer. Penton Media, Inc. Minneapolis, MN 55425. 52(no. 2):8-9.

Stalder, K., Fitzgerald, R., Johnson, A., Karriker, L., and Meisinger, D. 2007. A summary of the 13th Discover Conference on sow productive lifetime. Proc. in 32nd National Swine Improvement Federal Conference Annual Meeting, Kansas City MO.

Stalder, K., Huff-Lonergan, E., Knight, T., Goodwin, R., Prusa, K., and Beitz, D. 2007. Contributions of pH and intramuscular lipid to sensory quality of fresh pork loin. Iowa State University Animal Industry Report.

Stalder, K., Karriker, L., Serenius, T., and Knauer, M. 2007. Factors influencing sow longevity. Page 115 in Proc. Iowa Veterinary Medical Association Winter Conference, Ames IA.

Stalder, K., Karriker, L., Serenius, T., and Knauer, M. 2007. Influencing length of productive life of the sow herd. Reproduction: Optimizing genetics, health and production supplement. Page 13 in Proc. 2007 American Association of Swine Veterinary Annual Conference, Orlando FL.

Stalder, K., Knauer, M., and Karriker, L. 2007. Are sows being culled for the right reasons? National Hog Farmer. Penton Media, Inc. Minneapolis, MN 55425. 52(no.4): 26-30.

Suwansopee, T., Koonawootrittriron, S., Mabry, J., Sopanarat, P., Markvichit, K., and Tumwasorn, S. 2007. Heterosis effect for weaning to estrus interval in a commercial swine population in Thailand. Proc. 45th Kasetsart University Animal Genetics Conference, Thailand.

Tuggle C., Wang, Y., and Couture, O. 2007. Advances in swine transcriptomics. International Journal of Biological Sciences, 3: 132-152.

Tuggle, C., Wang, O. P. Couture, L. Qu, J. J. Uthe, D. Kuhar, J. K. Lunney, D. Nettleton, J. C. Dekkers, S. M. D. Bearson. 2007. Bioinformatic integration of structural and functional genomics data across species to develop porcine inflammatory gene regulatory pathway information. 5-7 October 2007. Evanston, IL.

Tuggle, C., Wang, Y., and Couture, O. (2007). Advances in Swine Transcriptomics. Plant & Animal Genome XV meeting proceedings (abstract W425) (P95). San Diego, CA.

Tuggle, C., Wang, Y., Couture, O., Qu, L., Uthe, J., Kuhar, D., Lunney, J., Nettleton, D., Dekkers, J., and Bearson, S. 2007. Computational integration of structural and functional genomics data across species to develop porcine inflammatory gene regulatory pathway information. Proc. in Animal Genomics for Animal Health Meeting, Paris France.

Tuggle, C., Wang, Y., Couture, O., Qu, L., Uthe, J., Kuhar, D., Lunney, J., Nettleton, D., Dekkers, J., and Bearson, S. 2007. Characterizing the porcine transcriptional regulatory response to infection by Salmonella: identifying putative new NFkB direct targets through comparative bioinformatics. Proc. In Genomics for Animal Health: E coli and Salmonella Workshop, Utrecht, The Netherlands.

Uthe, J., Royaee, A., Lunney, J., Stabel, T., Zhao, S., Tuggle, C., and Bearson, S. 2007. Porcine Differential Gene Expression in Response to Salmonella Enterica Serovars Choleraesuis and Typhimurium. Molecular Immunology, 44: 2900.

Wang, J., Koehler, K., and Dekkers, J. 2007. Interval Mapping of Quantitative Trait Loci with Selective DNA Pooling Data. Genetics Selection Evolution, 39: 685-709.

Wang, Y., Qu, L., Uthe, J., Bearson, S., Kuhar, D., Lunney, J., Couture, O., Nettleton, D., Dekkers, J., and Tuggle, C. 2007. Global Transcriptional Response of Porcine Mesenteric Lymph Nodes to Salmonella Enterica Serovar Typhimurium. Genomics, 90: 72-84.

Wang, Y., Qu, L., Uthe, J., Bearson, S., Kuhar, D., Lunney, J., Couture, O., Nettleton, D., Dekkers, J., and Tuggle, C. 2007. Global Transcriptional Response of Porcine Mesenteric Lymph Nodes to Salmonella enterica serovar Typhimurium. Genomics 90:72-84.

Yu M., Geiger B., Dee, N., Rothschild, M. 2007. Investigation of TXNIP (Thioredoxin-Interacting Protein) and TRX (Thioredoxin) genes for growth-related traits in pigs. (abstract). Plant and Animal Genome XV Conference, San Diego, CA

Yu M., Geiger B., Dee, N., Rothschild, M. 2007. Investigation of TXNIP (Thioredoxin-Interacting Protein) and TRX (Thioredoxin) Genes for Growth-Related Traits in Pigs. Mammal Genome, 18: 197.

Zhang, S., Knight T. J., Stalder K. J., Goodwin R. N., Lonergan S. M., and Beitz D. C., 2007. Effects of breed, gender, and halothane genotype on fatty acid composition and healthfulness of pork longissimus dorsi muscle. J. Anim. Sci. 85:583-591.

Zhang, W., Carriquiry A., Nettleton D., and Dekkers J.C.M., 2007. Pooling mRNA in microarray experiments and its effect on power. Bioinformatics 23: 1217-1224.

Zhao, H., Nettleton, D., Dekkers, J.C.M., 2007. Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between single nucleotide polymorphisms. Genetical Research. 89 1-6.

Zhao, H.H., Fernando R.L., and Dekkers J.C.M., 2007. Effects of population structure on power and precision of regression-based linkage disequilibrium mapping of QTL. Midwest Animal Science Meeting, Des Moines.

Zhao, H.H., Fernando R.L., and Dekkers J.C.M., 2007. Power and precision of alternate methods for linkage disequilibrium mapping of QTL. Genetics: 175: 1975-1986.

Cassady, JP, JL Cagle, BJ Skelly, KM Youngs, CS Whisnant. 2008. Endocrine response to acute stress in pigs with differing backtest scores. J. Anim. Sci. Suppl. 2.

J. S. Bates, A. R. Doster, and R. K. Johnson. 2007. Genetic analysis of incidence of porcine circovirus associated disease (PCVAD) in a composite swine population. Abstracts. 2007 ASAS Midwest Meeting, p 14.

J. S. Bates, A. R. Doster, and R. K. Johnson. 2007. Genetic analysis of incidence of porcine circovirus associated disease (PCVAD) in a composite swine population. Abstracts. 2007 ASAS Midwest Meeting, p 14.

J. S. Bates, D. B. Petry, J. Eudy , L. Bough , and R. K. Johnson.2008. Differential expression in lung and bronchial lymph node of pigs with high and low responses to infection with Porcine Reproductive and Respiratory Syndrome Virus. J. Anim.Sci. (Submitted)

J. S. Bates, A. R. Doster, and R. K. Johnson. 2007. Analysis of incidence of Porcine Circovirus Associated Disease (PCVAD) in a landrace/large white composite population. J. Anim. Sci. Vol. 85, Suppl. 1: 627.

C. Y. Chen, R. K. Johnson, S. D. Kachman, and L. D. Van Vleck. 2007. Effects of competition on expected response to selection for ADG. J. Anim. Sci. Vol. 85, Suppl. 1. : 134.

Chen, C. Y., R. K. Johnson, S. Newman, and L. D. Van Vleck. 2007. A general review of genetic competition effects with an emphasis on swine breeding. Genetics and Molecular Research 6(3): 594-606.

D. B. Petry, J. Lunney, P. Boyd, D. Kuhar, E. Blankenship, and R. K. Johnson. 2007. Differential immunity in pigs with high and low responses to porcine reproductive and respiratory syndrome virus (PRRSV) infection. J Anim Sci 2007: jas.2006-721v1.

T. Serenius, K. J. Stalder, T. J. Baas, J. W. Mabry, R. N. Goodwin, R. K. Johnson, O. W. Robison, M. Tokach, and R. K. Miller . 2007. National Pork Producers Council Maternal Line National Genetic Evaluation Program: A comparison of sow longevity and trait associations with sow longevity. J Anim Sci 2006 84: 2590-2595.

Lepper, A. N., Zerby, H. N., Moeller, S. J., Brueggemeier, K. M., and Naber, A. C. 2007. Efficacy of blood hemoglobin as an indicator of pork quality. J. Anim. Sci. Vol. 85, Suppl 1. p 491.

Naber, A. C., Brueggemeier, K. M., Moeller, S. J., Zerby, H. N., and Irvin, K. M. 2007. Response to genetic selection for longissimus color in Landrace swine: Status following two generations of selection. J. Anim. Sci. Vol. 85, Suppl 1. p 478.

Brueggemeier, K. M., Naber, A. C., Moeller, S. J., and Zerby, H. N. 2007. Comparison of pure Berkshire, Landrace, and the reciprocal crosses at two market endpoints. J. Anim. Sci. Vol. 85, Suppl 1. p 626.

Wang XX, Chen J, Liu HL, Xu YX, Wang XN, Xue CY, Yu DB, Jiang Z. 2008. The pig p160 co-activator family: full length cDNA cloning, expression and effects on intramuscular fat content in Longissimus Dorsi muscle. Domestic Animal Endocrinology 35: 208  216.

Chen J, Yang XJ, Xia D, Chen J, Wegner J, Jiang Z, Zhao RQ. 2008. Sterol regulatory element binding transcription factor 1 expression and genetic polymorphism significantly affect intramuscular fat deposition in the longissimus muscle of Erhualian and Sutai pigs. Journal of Animal Science 86:57-63.

Ando A, Uenishi H, Kawata H, Tanaka M, Shigenari A, Flori L, Chardon P, Lunney JK, Kulski JK, Inoko H. 2008. Microsatellite diversity and crossover regions within homozygous and heterozygous SLA haplotypes of different pig breeds. Immunogenetics. 60: 399-407.

Butler JE, Lager KM, Spichal I, Francis D, Kacskovics I, Sinkora M, Wertz N, Sun J, Zhao Y, Brown WR, DeWald R, Dierks SE, Muyldermans S, Lunney JK, McCray P, Christenson R, Rogers C, Welsch M, Navarro P, Klobasa F, Ramsoondar J. 2008. The Piglet as a Model for B cell and Immune System Development. Vet. Immunol. Immunopathol. 128: 147-70.

Ho C-S, Lunney JK, Ando A, Rogel-Gaillard C, Lee J-H, Schook LB, Smith DM. 2008. Nomenclature for factors of the SLA system, update 2008. Tissue Antigens. 73: 307-315.

Ho C-S, Lunney JK, Franzo-Romain MH, Martens GW, Lee Y-J, Lee J-H, Wysocki M, Rowland RRR, Smith DM. 2009. Molecular characterization of swine leukocyte antigen (SLA) class I genes in outbred pig populations. Animal Genetics. Submitted.

Lunney JK. 2008. Genetics of Infectious Disease Resistance in Animals. Proceedings American College of Veterinary Pathologists Meeting 2008. p.240-242.

Steibel JP, Wysocki M, Lunney JK, Ramos AM, Hu Z-L, Rothschild MF, Ernst CW. 2009. Validation of the Swine Protein-Annotated Oligonucleotide Microarray. Animal Genetics. Submitted.

Wang YF, Couture OP, Qu L, Uthe JJ, Bearson SMD, Kuhar D, Lunney JK, Nettleton D, Dekkers JCM, Tuggle CK. 2008. Analysis of Porcine Transcriptional Response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkB are activated in the Mesenteric Lymph Node. BMC Genomics. 9: 437.

Wang, Y., Qu, L., Uthe, J., Bearson, S., Kuhar, D., Lunney, J., Couture, O., Nettleton, D., Dekkers, J., and Tuggle, C. 2007. Global Transcriptional Response of Porcine Mesenteric Lymph Nodes to Salmonella enterica serovar Typhimurium. Genomics 90:72-84.

Tuggle CK, Wang YF, Couture OP, Qu L, Uthe JJ, Kuhar D, Lunney JK, D. Nettleton D, J.C. Dekkers JC, Bearson SMD. 2008. Computational Integration of Structural and Functional Genomics Data across Species to Develop Information on Porcine Inflammatory Gene Regulatory Pathway. Dev Biol (Basel). 132: 105-13.

Abstracts
Ernst CW, Steibel JP, Ramos AM, Lunney JK, Wysocki M, Petry D, Johnson RK, Fahrenkrug SC, Tempelman RJ, Rothschild MF, Juneja BS, Garbe J, Elsik CG, Bates RO,Helman EE, Blaire L. Varnes BL, Matthew E. Doumit ME. 2008. Assessment of the Swine Protein-Annotated Oligonucleotide Microarray and Utility of the Arrays for eQTL and Transcriptional Profiling Studies. PAG-XVI (W494).
Fritz E, Hu Z, Lunney J, Reecy J. 2008. The PHGC Database: management of large data sets. Intnl PRRS Symp. #324.
Lunney JK. 2008. Genetics of Infectious Disease Resistance in Animals: Pig and PRRS. Proc. Am Coll Vet Pathol. Meeting.
Lunney, J., Bearson, S., Wang, Y., Uthe, J., Qu, L., Couture, O., Zhao, S., Kuhar, D., Nettleton, D., Dekkers, J., and Tuggle, C. 2007. Comparing the porcine response to infection with Salmonella enterica serovars of food safety (Typhimurium) and animal health (Choleraesuis) importance. Proc. International Symposium on Animal Genomics for Animal Health, Paris France.
Lunney JK, Ho C-S, Wysocki M, Smith DM. 2008. Update on SLA genes and their impact on immune and disease interactions. Intnl Society for Animal Genetics (ISAG 2008).
Lunney JK, Wysocki M, Kuhar D, Steibel JP, Ernst CW, McCaw M, Rowland RRR. 2008. Genetic control of swine responses to porcine reproductive and respiratory syndrome virus infection. Intnl Society for Animal Genetics (ISAG 2008).
Lunney JK, Wysocki M, Kuhar D, Steibel JP, Ernst CW, McCaw M, Rowland RRR. 2008. Genetic control of swine responses to porcine reproductive and respiratory syndrome virus infection. EuroPRRSworkshop, Belgium.
Steibel JP, Ramos AM, Tempelman RJ, Bates RO, Wysocki M, Lunney JK, Petry D, Johnson RK, Fahrenkrug SC, Juneja BS, Garbe J, Rothschild MF, Elsik CG, Ernst CW. 2008. Assessment of the Swine Protein-Annotated Oligonucleotide Microarray by Utilizing Designed Control Features Included on the Array. PAG-XVI P732.
Tuggle, C., Wang, O. P. Couture, L. Qu, J. J. Uthe, D. Kuhar, J. K. Lunney, D. Nettleton, J. C. Dekkers, S. M. D. Bearson. 2007. Bioinformatic integration of structural and functional genomics data across species to develop porcine inflammatory gene regulatory pathway information. 5-7 October 2007. Evanston, IL.
Tuggle, C., Wang, Y., Couture, O., Qu, L., Uthe, J., Kuhar, D., Lunney, J., Nettleton, D., Dekkers, J., and Bearson, S. 2007. Computational integration of structural and functional genomics data across species to develop porcine inflammatory gene regulatory pathway information. Proc. in Animal Genomics for Animal Health Meeting, Paris France.
Tuggle, C., Wang, Y., Couture, O., Qu, L., Uthe, J., Kuhar, D., Lunney, J., Nettleton, D., Dekkers, J., and Bearson, S. 2007. Characterizing the porcine transcriptional regulatory response to infection by Salmonella: identifying putative new NFkB direct targets through comparative bioinformatics. Proc. In Genomics for Animal Health: E coli and Salmonella Workshop, Utrecht, The Netherlands.
Tuggle CK, Wang YF, Couture OP, Christian C, Qu L, Uthe JJ, Kuhar D, Lunney J, Nettleton D, Dekkers JCM, Bearson SMD. 2008. Comparative bioinformatic analysis of the transcriptional response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkB are activated in the porcine mesenteric lymph node. Intnl Symp Animal Functional Genomics, UK.
Tuggle CK, Zhao SH, Qu L, Wang Y, Couture OP, Kuhar D, Lunney JK, Ross JW, Lucy M, Nettleton D, Dekkers JCM, Geisert RD. 2008. Differential Endometrial Transcript Expression Between Yorkshire and the Prolific Meishan Breed of Pigs during the Critical Stage of Conceptus Elongation and Early Attachment. PAG-XVI P730.
Wysocki M, Steibel JP, McCaw M, Kuhar D, Ernst CW, Lunney JK. 2008. Uncovering genetic components involved in early regulatory immune response during PRRSV infection. Intnl PRRS Symp. #285 and CRWAD #125.

02/08/2010

Georgia Station

Lkhagvadory, S., Qu, L., Cai, W., Couture, L., Barb, C.R., Hausman, G.J., Rekaya, R., Nettleton, D., Anderson, L., Dekkers, J., Tuggle, C. 2009. Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant. Physiological Genomics. 38(1)98.
Wang Y., R. Rekaya. 2009. A comprehensive analysis of gene expression evolution between humans and mice. Evolutionary bioinformatics online. 5:81-90.
Lkhagvadorj, S., Qu, L., Cai, W., Couture, Barb, C.R., Hausman, G.J., Nettleton, D., Anderson, L., Deckers, J., Tuggle, C. 2009. Leptin mediates discriminate response to feed restriction in feed efficient pigs. Meeting Abstract.
Barb, C.R., Hausman, G.J. 2009. Insulin-like growth factor-I feedback regulation of growth hormone and luteinizing hormone secretion in the pig: Evidence for a pituitary site of action. Animal. v.3 (6) p. 844-849.
Wang, H, R. Rekaya. 2009. Low density SNP chip for non-genotyped animals. J. Anim. Sci. Vol. 87, E-Suppl. 2 p. 125.

Iowa Station
Alexander, L.S., A. Qu, S.A. Cutler, A. Mahajan, M.F. Rothschild, W. Cai, J.C. Dekkers, and C.H. Stahl. 2009. A calcitonin receptor (CALCR) single nucleotide polymorphism is associated with growth performance and bone integrity in response to dietary phosphorus deficiency. J. Anim. Sci. 2009 Nov 20. [Epub ahead of print].
Boddicker, N., D. Nettleton, N. Gabler, M. Spurlock, and J. C. M. Dekkers. 2009. Performance and carcass composition of pigs selected for residual feed intake on restricted and ad libitum diets. ADSA/ASAS annual meeting. Abstract # 410
Boddicker, N., N. Gabler, M. Spurlock, and J. C. M. Dekkers. 2009. Growth and Efficiency of Pigs Selected for Residual Feed Intake on Restricted and Ad Libitum Diets. Midwest ADSA/ASAS Meeting, Des Moines.
Boddicker, N., N. Gabler, M. Spurlock, D. Nettleton, and J.C.M. Dekkers. 2009. Growth and Efficiency of Pigs Selected for Residual Feed Intake on Restricted and Ad Libitum Diets. A.S. Leaflet R2453. Iowa State Animal Industry Report.
Burkett, J. L., K. J. Stalder, W. J. Powers, J. L. Pierce, T. J. Baas, T. B. Bailey, B. L. Shafer, and K. Bregendahl. 2009. Effect of inorganic and organic trace mineral supplementation on the performance, carcass characteristics, and fecal mineral excretion of phase-fed, grow-finish swine. Aust. J. Anim. Sci.22:1279-1287.
Cai W., H. Wu, and J. C. M. Dekkers. 2009. Longitudinal random regression analysis of growth and feed intake in selection lines for residual feed intake in Yorkshire swine. ADSA/ASAS annual meeting. Abstract # 412.
Cai, C., H. Wu, J. Dekkers, professor of animal science. 2009. Longitudinal Analysis of Body Weight and Feed Intake in Selection Lines for Residual Feed Intake in Pigs. A.S. Leaflet R2394. Iowa State Animal Industry Report.
Cai, W., H. Wu, J. C.M. Dekkers. 2009. Longitudinal Analysis of Body Weight and Feed Intake in Selection Lines for Residual Feed Intake in Pigs. Midwest ADSA/ASAS Meeting, Des Moines.
Christian, C., O. Couture, C. Y. Demirkale, D. Nettleton, J.J. Uthe, S.M.D. Bearson, V. Honavar, C. K. Tuggle. Identification of Common Functions of Differentially Expressed Gene Sets in Porcine Whole Blood in Response to Infection with Salmonella enterica serovar Typhimurium Plant and Animal Genome meeting: January 10-14, 2009, San Diego; abstract #P641; page 120.
Dekkers, J. C. M., H. H. Zhao, D. Habier, and R. L. Fernando. 2009. Opportunities for genomic delection with redesign of breeding programs. ADSA/ASAS annual meeting. Abstract # 275.
Doeschl-Wilson, A.B., I. Kyriazakis, A. Vincent, M.F. Rothschild, E. Thacker, and L. Galina-Pantoja. 2009. Clinical and pathological responses of pigs from two genetically diverse commercial lines to porcine respiratory and reproductive syndrome virus infection. J. Anim. Sci. 87: 1638-1647.
Du, Z.-Q., B. Fan, X. Zhao, R. Amoako, and M.F. Rothschild. 2009. Association analyses between type 2 Diabetes genes and obesity traits in pigs. Obesity 17: 323-329.
Du, Z.-Q., D.M. Gorbach, Z.-L. Hu, and M.F. Rothschild. 2009. Fatness genes and segmental duplications in pigs. Pig Genome III Conference. November 2-4. Hinxton, UK. Abstract No. 8.
Du, Z.-Q., X. Zhao, N. Vukasinovic, F. Rodriguez, A.C. Clutter, and M.F. Rothschild. 2009. Association and haplotype analyses of positional candidate genes in five genomic regions linked to scrotal hernia in commercial pig lines. PLoS one. 4: e4837.
Eisenmann, J.C., M.A. Sarzynski, K. Glenn, M.F. Rothschild, and K.A. Heelan. 2009. ACE I/D genotype, adiposity, and blood pressure in children. Cardiovasc. Diabetol. 8: 14.
Engblom, L., K. Stalder, and J. Mabry, 2009. Save money by keeping sows longer. Benchmark 2008 Summary of the PigCHAMP database. Farms.com Media & PigCHAMP, Ames, IA. 4:26-28.
Fan, B., Onteru, S.K, Garrick, D., Stalder, K.J, and M.F. Rothschild. 2009. A genome-wide association study for pig production and feet and leg structure traits using the PorcineSNP60 BeadChip. Pig Genome III Conference, November 2-4, 2009, Hinxton, Cambridge, UK. Abstract No. 6.
Fan, B., S. Lkhagvadorj, W. Cai, J. Young, R.M. Smith, J.C.M. Dekkers, E. Huff-Lonergan, S.M. Lonergan, and M.F. Rothschild. 2009. Identification of genetic markers associated with residual feed intake and meat quality traits in the pig. Meat Science. (doi:10.1016/j.meatsci.2009.10.025).
Fan, B., S.K. Onteru, B. Mote, T. Serenius, K.J. Stalder, and M.F. Rothschild. 2009. Large-scale association study for structural soundness and leg locomotion traits in the pig. Genet. Sel. Evol. 41: 14.
Fan, B., S.K. Onteru, G.S. Pastow, and M.F. Rothschild. 2009. Detailed characterization of the porcine MC4R gene in relation to fatness and growth. Anim. Genet. 40: 401-409.
Fan, B., S.K. Onteru, K.J. Stalder, and M.F. Rothschild. 2009. Identification of genetic markers associated with fatness and leg weakness traits in the pig. Anim. Genet. 40: 967-970.
Fan, B., S.K. Onteru, M. Nikkilä, K.J. Stalder, and M.F. Rothschild. 2009. Identification of genetic markers associated with sow reproductive traits. Iowa State University Animal Industry Report 2009.
Fan, B., S.K. Onteru, M.T. Nikkilä, K.J. Stalder, and M.F. Rothschild. 2009. Large-scale association studies for reproductive traits in pigs. The International Plant & Animal Genome XVII Conference. January 10-14, 2009. San Diego, California. P535.
Fan, B., S.K. Onteru, M.T. Nikkilä, K.J. Stalder, and M.F. Rothschild. 2009. Identification of genetic markers associated with fatness and leg weakness traits in the pig. Midwestern Section ASAS and Midwest Branch ADSA. March 16-18, Des Moines, Iowa. Abstract No. 32.
Fan, B., S.K. Onteru, M.T. Nikkilä, K.J. Stalder, and M.F. Rothschild. 2009. The COL9A1 gene is associated with longissmus dorsi muscle area in the pig. Anim. Genet. 40: 788.
Fan, B., S.K. Onteru., and M.F. Rothschild 2009. The GGT1 and IGFBP5 genes are associated with fat deposition traits in the pig. Archiv Tierzucht. 52: 337-339.
Fan, B., Z.-Q. Du, and M.F. Rothschild. 2009. The Fat mass and Obesity-Associated (FTO) gene is associated with intramuscular fat content and growth rate in the pig. Anim. Biotechnol. 20: 58-70.
Fitzgerald, R. and K. Stalder. 2009. Reducing transport losses. National Hog Farmer Penton Media, Inc. Minneapolis, MN 55425. 54(no.6):28-30.
Fitzgerald, R. F., K. J. Stalder, J. O. Matthews, C. M. Schultz - Kaster, and A. K. Johnson. 2009. Factors associated with fatigued, injured and dead pig frequency during transport and lairage at a commercial abattoir. J. Anim. Sci. 87:1156-1166.
Fitzgerald, R. F., K. J. Stalder, P. M. Dixon, A. K. Johnson, L. Karriker, and G. F. Jones. 2009. The accuracy and repeatability of sow body condition scoring. Prof. Anim. Sci. 25:415-425.
Garvey, J., A. K. Johnson, L. J. Sadler, K. J. Stalder, and J. McGlone. 2009. Piglet Mortality in an Outdoor Farrowing Hut: What Contributes to their Demise Over the First 72-h After Parturition? Animal Industry Report. Iowa State University, Ames, IA 50011.
Gorbach, D.M., W. Cai, J.C.M. Dekkers, J.M. Young, D.J. Garrick, R.L. Fernando, and M.F. Rothschild. 2009. Whole-genome analyses for genes associated with residual feed intake and related traits utilizing the PorcineSNP60 BeadChip. Pig Genome III Conference. November 2-4. Hinxton, UK. Abstract No. 11.
Gorbach, D.M., W. Cai, J.C.M. Dekkers, J.M. Young, D.J. Garrick, R.L. Fernando, and M.F. Rothschild. 2009. Whole-genome analyses for genes associated with residual feed intake and related traits utilizing the PorcineSNP60 BeadChip. Pig Genome III Conference, United Kingdom.
Guo,Y.M., H.S. Ai, J. Ren, G.J. Wang, Y. Wen, H.R. Mao, L.T. Lan, J.W. Ma, B. Brenig, M.F. Rothschild, C.S. Haley, and L.S. Huang. 2009. A whole genome scan for quantitative trait loci for leg weakness and its related traits in a large F2 intercross population between White Duroc and Erhualian. J. Anim. Sci. 87: 1569-1575.
Ibanez-Escriche, N., R.L. Fernando, A. Toosi, and J.C.M. Dekkers. 2009. Genomic selection of purebreds for crossbred performance. Genet. Select. Evol. 41:12.
Isaacson, B., T. J. Baas, C. R. Schwab, and K. Schulte. 2009. Effect of Extracted Corn Meal from a Fractionation Process on Pig Growth Performance and Carcass Characteristics. Midwest ASAS Meeting, Des Moines, IA.
Jackson, C. J., A. K. Johnson, L. J. Sadler, K. J. Stalder, L. A. Karriker, R. E. Edler, and J. Tyler Holck, 2009. Drinker to Nursery Pig Ratio: Preference for a Drinker Location within a Pen and its Effects on Aggression. Animal Industry Report. Iowa State University, Ames, IA 50011.
Jackson, C. J., L. A. Karriker, K. J. Stalder, and A. K. Johnson. 2009. Number of visits and length of each visit to a nipple cup drinker by 7-week-old pigs after a water deprivation period or ad libitum access to water. J. Swine Health Prod. 17:76-80.
Johnson, A. K., J. McGlone, L. J. Sadler, A. M. Meisberg, and K. J. Stalder. 2009. Risky behaviors performed by the piglet 72 hours after parturition that can contribute to pre-weaning mortality when housed in farrowing huts. Acta Agric. Scand. A Animal Sci. 59:53-58.
Johnson, A. K., L. J. Sadler, K. J. Stalder, and W. Powers. Corn Co-products; How Do They Affect the Behavior of Grow-Finish Swine? Animal Industry Report. Iowa State University, Ames, IA 50011.
Johnson, A. L. Sadler, J. Kline, R. Witte, W. Holt, K. Stalder, L. Layman, L. Karriker, and B. de Rodas. 2009. The Effect of Supplementing Dry Feed with a Nutritional Gel Product at the Time of Vaccination on Nursery Pig Maintenance Behaviors and Postures. Animal Industry Report. Iowa State University, Ames, IA 50011.
Lkhagvadorj, S., L. Qu, W. Cai, O.P. Couture, C.R. Barb, G.J. Hausman, D. Nettleton, L.L. Anderson, J.C.M. Dekkers, C.K. Tuggle. 2009. Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant. Physiological Genomics 38:98-111.
Lkhagvadorj, S., L. Qu, W. Cai, O.P. Couture, C.R. Barb, G.J. Hausman, D. Nettleton, L.L. Anderson, J.C.M. Dekkers, C.K. Tuggle. 2009 Leptin mediates discriminate response to feed restriction in feed efficient pigs. Experimental Biology Meeting.
Mabry, J., K. Stalder, and L. Engblom. 2009. Genetic improvement of farrowing rate in pigs. Benchmark 2008 Summary of the PigCHAMP database. Farms.com Media & PigCHAMP, Ames, IA. 4:34.
Makgahlela, M.L., B. Fan, Z.-Q. Du, and M.F. Rothschild. 2009. Investigation of effects of three candidate genes on leg action and fat deposition traits in pigs. S. Afr. J. Anim. Sci. 39: 127-130.
Mote, B.E., J.W. Mabry, K.J. Stalder, and M.F. Rothschild. 2009. Evaluation of current reasons for removal of sows from commercial farms. The Professional Animal Scientist 25: 1-7.
Mote, B.E., K.J. Koehler, J.W. Mabry, K.J. Stalder, and M.F. Rothschild. 2009. Identification of genetic markers for productive life in commercial sows. J. Anim. Sci. 87: 2187-2195.
Nikkilä, M., K. Stalder, B. Mote, J. Lampe, B. Thorn, M. Rothschild, A. Johnson, L. Karriker, and T. Serenius. 2009. Associations between body and leg structure traits in gilts. Animal Industry Report. Iowa State University, Ames, IA 50011.
Nikkilä, M., K. Stalder, B. Mote, J. Lampe, B. Thorn, M. Rothschild, A. Johnson, L. Karriker, and T. Serenius. 2009. Impact of Gilts Body Composition and Body Structure on Reproductive Performance. Animal Industry Report. Iowa State University, Ames, IA 50011.
Nikkilä, M., K. Stalder, B. Mote, J. Lampe, B. Thorn, M.F. Rothschild, A. Johnson, L. Karriker, and T. Serenius. 2009. Impact of gilts body composition and body structure on reproductive performance. Midwestern Section ASAS and Midwest Branch ADSA. March 16-18, Des Moines, Iowa. Abstract No. 27.
Nikkilä, M., K.J. Stalder, B. Mote., J. Lampe, B. Thorn, M.F. Rothschild and A. Johnson. 2009. Associations between body and leg structure traits in gilts. Iowa State University Animal Industry Report 2009.
Nikkilä, M., K.J. Stalder, B. Mote., J. Lampe, B. Thorn, M.F. Rothschild and A. Johnson. 2009. Impact of gilts body composition and body structure on reproductive performance. Iowa State University Animal Industry Report 2009.
Nikkilae, M., K. Stalder, B. Mote, M. Rothschild, A. Johnson, L. Karriker, T. Serenius, J. Lampe, B. Thorn. 2009. Structural soundness in commercial gilts studied. National Hog Farmer. Penton Media, Inc. Minneapolis, MN 55425. available at: http://nationalhogfarmer.com/geneticsreproduction/evaluation-selection/structural-soundness-commercial-gilts/?cid=research accessed:March 3, 2009.
Nikkilae, M., K. Stalder, T. Serenius, B. Mote, M. Rothschild, A. Johnson, L. Karriker, and B. Thorn. 2009. Trait interactions offer clues to sow lifetime performance. National Hog Farmer. Penton Media, Inc. Minneapolis, MN 55425. 54(1):36-38.
Onteru, S.K., B. Fan, and M.F. Rothschild. 2009. The MMP2 gene may be associated with longissimus dorsi muscle area in the pig (Sus scrofa). J. Appl. Genet. 50: 251-252.
Onteru, S.K., B. Fan, D. Garrick, K.J. Stalder, and M.F. Rothschild. 2009. Whole genome analyses for pig reproductive traits using the PorcineSNP60 BeadChip. Pig Genome III Conference. November 2-4, 2009, Hinxton, Cambridge, UK. Abstract No. 5.
Onteru, S.K., J.W. Ross, and M.F. Rothschild. 2009. The role of gene discovery, QTL analyses and gene expression in reproductive traits in the pig. Soc. Reprod. Fertil. Suppl. 66: 87-102.
Opriessnig, T., A.R. Patterson, D.M. Madson, N. Pal, M.F. Rothschild, D. Kuhar, J. Lunney, N.M. Juhan, X.J. Meng, and P.G. Halbur. 2009. Difference in severity of porcine circo virus type 2 induced pathological lesions between Landrace and Pietrain pigs J. Anim. Sci. 87: 1582-1590.
Pyiasatian, N., R.L. Fernando, and J.C.M. Dekkers. 2009. Models for marker-assisted genetic evaluation with multiple QTL in a crossbred population. Livestock Sci. 125: 141-148.
Qiu, H., X. Xu, B. Fan, M.F. Rothschild, Y. Martin, and B. Liu. 2009. Investigation of LDHA and COPB1 as candidate genes for muscle development in the MYOD1 region of pig chromosome 2. Mol. Biol. Rep. 2009 Oct 16. [Epub ahead of print].
Ramos, A.M., R.H. Pita, M. Malek, P.S. Lopes, S.E.F. Guimarães, and M.F. Rothschild. 2009. Analysis of the mouse high-growth region in pigs. J. Anim. Breed. Genet. 126: 404-412.
Ramos, A.M., R.P. Crooijimans, N.A. Affara, A.J. Amaral, A.L. Archibald, J.E. Beever, C. Bendixen, C. Churcher, R. Clark, P. Dehais, M.S. Hansen, J. Hedegaard, Z.L. Hu, H.H. Kerstens, A.S. Law, H.J. Megens, D. Milan, D.J. Nonneman, G.A. Rohrer, M.F. Rothschild, T.P. Smith, R.D. Schnabel, C.P. Van Tassell, J.F. Taylor, R.T. Wiedmann, L.B. Shook, and M.A. Groenen. 2009. Design of high density SNP genotyping assay in the using SNPs identified and characterized by next generation sequencing technology. PLoS One: e6524.
Ramos, M., J.B. Bastiaansen, and M.F. Rothschild. 2009. Genes located on a SSC17 meat quality QTL region are associated with growth in outbred pig populations. Anim. Genet. 40: 774-778.
Renaville, B., E. Piasentier, M. Vitale, M.F. Rothschild, and A Prandi. 2009. SCD polymorphism affect oleic to stearic acid ratio in San Daniele Ham. The International Plant & Animal Genome XVII Conference. January 10-14, 2009. San Diego, California. P532.
Ross, J.A., M. D. Ashworth, D.R. Stein, O. Couture, C.K. Tuggle, and R. Geisert. 2009. Identification of Differential Gene Expression during Porcine Conceptus Rapid Trophoblastic Elongation and Attachment to the Uterine Luminal Epithelium. Physiological Genomics 36: 140-148.
Rothschild, M.F., D.M. Gorbach, B. Fan, S.K. Onteru, Z.-Q. Du, J.C.M. Dekkers, K. Stalder, D. Garrick, and R. Fernando. 2009. Improving swine genetics using new genotyping technology. National Hog Farmer, December Research Issue.
Sadler, L. J., A. K. Johnson, J. Newton, K. J. Stalder, and J. C. M. Dekkers. 2009. Grow-finish Pigs Activity Levels when Fed Using a Feed Intake Recording Equipment (F.I.R.E.) Feeder. Animal Industry Report. Iowa State University, Ames, IA 50011.
Schwab, C. R., B. E. Mote, Z. Du, R. Amoako, M. F. Rothschild, and T. J. Baas. 2009. An evaluation of four candidate genes for use in selection programs aimed at increased intramuscular fat in Duroc swine. J. Anim. Breed. Genet. 126:228-236.
Schwab, C. R., T. J. Baas, K. J. Stalder, and D. Nettleton. 2009. Results from six generations of selection for intramuscular fat in Duroc swine using real-time ultrasound. I. Direct and correlated phenotypic responses to selection. J. Anim. Sci. 87: 2774-2780.
Schwab, C.R., B.E. Mote, Z.-Q. Du, R. Amoako, T.J. Baas, and M.F. Rothschild. 2009. An evaluation of four candidate genes for use in selection programmes aimed at increased intramuscular fat in Duroc swine. J. Anim. Breed. Genet. 126: 228-236.
Sironen, A.I., P. Uimari, T. Serenius, B. Mote, M. Rothschild, and J. Vilkki. 2009. Effect of polymorphisms in candidate genes on reproduction traits in Finnish pig populations. J. Anim. Sci. 2009 Nov 20. [Epub ahead of print].
Smith, R.M., J.M. Young, M.J. Anderson, R.C. Johnson, E. Huff-Lonergan, J. Dekkers, S.M. Lonergan. 2009 Influence of selection for reduced residual feed intake on pork quality. Midwest ADSA/ASAS Meeting, Des Moines.
Smith, R.M., J.M. Young, M.J. Anderson, R.C. Johnson, E. Huff-Lonergan, J. Dekkers, S.M. Lonergan. 2009 Influence of selection for reduced residual feed intake on pork quality. A.S. Leaflet R2447. Iowa State Animal Industry Report.
Stalder, K. J. 2009. Calculating payback parity for replacement gilts. National Hog Farmer. Penton Media, Inc. Minneapolis, MN 55425. 54:18-24.
Stalder, K. J., L. Engblom, and C. Johnson. 2009. Understanding sow lameness. Western Hog Journal. Alberta Pork, Edmonton, Alberta, Canada, 30:38-41
Stalder, K., L. Engblom, and J. Mabry. 2009. Benchmarking sow lifetime productivity. Benchmark 2008 Summary of the PigCHAMP database. Farms.com Media & PigCHAMP, Ames, IA. 4:10-12.
Stalder, K., L. Karriker, A. Johnson, and M. Nikkilä. 2009. Sire impacts on sow longevity in commercial breeding herds. In: Pre-Conference Seminar #10: Boar Studs: Disease updates and tools to reduce cost. Proc. Amer. Assoc. Swine Vet. pp. 9-18.
Steibel, J.P., M. Wysockic, J.K. Lunneyc, A.M. Ramosa, Z.L. Hu, M.F. Rothschild, and C.W. Ernst. 2009. Assessment of the swine protein-annotated oligonucleotide microarray. Anim. Genet. 40: 883-893.
Uthe, J.J., S.M.D. Bearson, J.C. Dekkers, A.M. OConnor, J.D. McKean, K.M. Steffensmeier, and C.K. Tuggle. 2009. Identifying Genetic Polymorphisms Associated with Salmonella Shedding for Improved Food Safety and Porcine Disease Resistance. Plant and Animal Genome, San Diego, January, 2009.
Uthe, J.J., S. M.D.Bearson, J. Dekkers, A. OConnor, J. McKean, K. M. Steffensmeier, C. K. Tuggle. Identifying genetic polymorphisms associated with Salmonella shedding for improved food safety and porcine disease resistance. Plant and Animal Genome meeting: January 10-14, 2009, San Diego; abstract #P168; page 69.
Uthe, J.J., Y. Wang, L. Qu, D. Nettleton, C.K. Tuggle and S.M.D. Bearson 2009. Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine. Veterinary Microbiology 135:384-388.
Xu, X.L., X.W. Xu, P.W. Pan, K.Li, Z.H. Jiang, M.Yu, M.F. Rothschild, and B. Liu. 2009. Porcine skeletal muscle differentially expressed gene CMYA1: isolation, characterization, mapping, expression and association analysis with carcass traits. Anim. Genet. 40: 255-261.
Xu, X.W., H.F. Qiu, Z.Q. Du, B. Fan, F. Yuan, M.F. Rothschild, and B. Liu. 2009. Porcine CSRP3: polymorphism and association analyses with meat quality traits and comparative analyses with CSRP1 and CSRP2. Mol. Biol. Rep. (doi 10.1007/s11033-009-9632-1).
Young J. M., W. Cai, and J. C. M. Dekkers. 2009. Effect of selection for residual feed intake on feeding behavior and daily feeding patterns in pigs. ADSA/ASAS annual meeting. Abstract # 411.
Young, J., J. Dekkers, D. Nettleton, and W. Cai.. 2009. Feeding behavior traits in Yorkshires selected for residual feed intake. A.S. Leaflet R2454. Iowa State Animal Industry Report.
Young, J.M., W. Cai, and J.C.M. Dekkers. 2009. Effect of selection for residual feed intake on feeding behavior in pigs. Midwest ADSA/ASAS Meeting, Des Moines.
Zhang, S., T. J. Knight, K. J. Stalder, R. N. Goodwin, S. M. Lonergan, and D. C. Beitz. 2009. Effect of breed, sex, and halothane genotype on fatty acid composition of triacylglycerols and phospholipids in pork longissimus muscle. J. Anim. Breed. Genet. 126:259-268.
Zhao, X., Z.-Q. Du, N. Vukasinovic, F. Rodriguez, A.C. Clutter, and M.F. Rothschild. 2009. Biological candidate gene analyses identify that HOXA10 and MMP2 are associated with scrotal hernias in pigs. Am. J. Vet Res. 70: 1006-1012.

Michigan Station
Bates, R.O. 2009. Genetic considerations for different sow housing options. J. Anim. Sci. 87: (E-Suppl. 3):63.
Ernst, C.W., J.P. Steibel, G.J.M. Rosa, R.J. Tempelman, R.O. Bates, V.D. Rilington, A. Ragavendran, N.E. Raney, A.M. Ramos, F.F. Cardoso and D.B. Edwards. 2009. Genome-wide expression QTL (eQTL) analysis of loin muscle tissue to identify candidate genes in pigs. J. Anim. Sci. 87(E-Suppl. 2):ii
Schinckel, A., R. Bates, T. See and C. Schwab. 2009. Impact of increased feed costs on the STAGES indexes and selection for terminal sire and maternal lines. Proc. 40th Ann. Mtg. AASV. Dallas, TX.
Sollero, B.P., V.D. Rilington, R.J. Tempelman, S.E.F. Guimaraes, J.D. Guimaraes, M.S. Lopes, N.E. Raney, J.P. Steibel and C.W. Ernst. 2009. Transcriptional profiling during fetal skeletal muscle development of Piau and commercial pigs. J. Anim. Sci. 87(E-Suppl. 2):125-6.
Steibel, J.P., G.J.M. Rosa, R.J. Tempelman, R.O. Bates, V.D. Rilington, A. Ragavendran, N.E. Raney, A.M. Ramos, F.F. Cardoso, D.B. Edwards and C.W. Ernst. 2009. Integration of genomic sequence information, DNA markers and transcript abundance data reveals cis and trans acting eQTL in pigs. Proceedings of the Pig Genome III Conference, Hinxton, UK.
Steibel, J.P., M. Wysocki, J.K. Lunney, A.M. Ramos, Z.-L. Hu, M.F. Rothschild and C.W. Ernst. 2009. Assessment of the swine protein-annotated oligonucleotide microarray. Animal Genetics. 40:883-893.
Straw, B., R. Bates and G. May. 2009. Anatomical abnormalities in a group of finishing pigs: prevalence and pig performance. Swine Health and Prod. 17:28-31.

Nebraska Station
W. L. Hsu, R. K. Johnson, and L. D. Van Vleck. Effect of Pen mates on Growth, Backfat Depth and Longissimus Muscle Area of Swine. J Anim Sci 2009: jas.2009-1879v1-20091879.
C. Y. Chen, R. K. Johnson, S. Newman, S. D. Kachman, and L. D. Van Vleck. Effects of social interactions on empirical responses to selection for average daily gain of boars. J Anim Sci 2009 87: 844-849.
J. S. Bates, D. B. Petry, J. Eudy, L. Bough, and R. K. Johnson . Differential expression in lung and bronchial lymph node of pigs with high and low responses to infection with porcine reproductive and respiratory syndrome virus. J Anim Sci 2008 86: 3279-3289.
C. Y. Chen, S. D. Kachman, R. K. Johnson, S. Newman, and L. D. Van Vleck. Estimation of genetic parameters for average daily gain using models with competition effects. J Anim Sci 2008 86: 2525-2530.
J. S. Bates, A. R. Doster, R. Moreno, and R. K. Johnson. Genetics and environment affect host immune response in pigs to Porcine Circovirus 2. Submitted to J. Anim. Breed. And Genet.
P. Miller, R. K. Johnson, R. Moreno, M. Anderson, J. Perkins, D. McClure, T. McGargill,. 2009. Effects of nutrition during gilt development on lifetime productivity of sows of two prolific maternal lines: Summary of growth characteristics and sow productivity. NE Swine report EC 219: 18-20.
R. K. Johnson, P. Miller, M. Anderson, J. Perkins, K. Rhynalds, T. Glidden, D. McClure, T. McGargill, D. Barnhill, and R. Moreno. 2009. Effects of nutrition during gilt development and genetic line on farrowing rates through Parity 3, causes of culling, sow weights and backfats through Parity 4, and factors affecting farrowing rates. NE Swine report EC 219: 21-26.
T. Burkey, P. Miller, R. Johnson, d. Reese, and r. Moreno. 2009. Does dam parity affect progeny health status. NE Swine report EC 219: 33-36.

Penn Station
Ma, J.-G., H. Yasue, K. Eyer, H. Hiraiwa, T. Shimogiri, S.N. Meyers, J.E. Beever, L.B. Schook, C.W. Beattie, and W.-S. Liu. 2009. An integrated RH map of porcine chromosome 10 (SSC10). BMC Genomics 10, 211 doi:10.1186/1471-2164-10-211.
Ma, J.-G., H. Yasue, K. Eyer, H. Hiraiwa, T. Shimogiri, S.N. Meyers, J.E. Beever, L.B. Schook, C.W. Beattie, and W.-S. Liu. 2009. An integrated RH map of porcine chromosome 10 (SSC10). PAG-XVII, San Diego, CA. January 10-14, 2009. p. 538.
Farmer, A.D. Crow, J.A., Retzel, E.F., Liu, W.-S., and Beattie, C. 2009. Can Comparative Genomics Assist in the Improvement of the Swine Genome Map? Proceedings of the Pig Genome III Conference, Hinxton, UK.
W.-S. Liu, H. Yasue, Farmer, A.D. Crow, J.A., Ma, J.-G., K. Eyer, J.E. Beever, L.B. Schook, Retzel, E.F., and C.W. Beattie, 2009. A High Resolution Porcine RH Map with 10,000 Markers. Proceedings of the Pig Genome III Conference, Hinxton, UK.

Washington Station
Chen J, Guridi M, Fernyhough ME, Jiang Z, Guan LL, Hausman GJ, Dodson MV. 2009. Initial differences in lipid processing leading to pig- and beef-derived mature adipocyte dedifferentiation. Basic and Applied Myology 19:243-246.
Chen J, Guridi M, Fernyhough ME, Jiang Z, Guan LL, Hausman GJ, Dodson MV. 2009. Clonal mature adipocyte production of proliferative-competent daughter cells requires lipid export prior to cell division. International Journal of Stem Cells 2:76-79.
Xu XL, Xu XW, Pan PW, Li K, Jiang Z, Yu M, Rothschild MF, Liu B. 2009. Porcine skeletal muscle differentially expressed gene CMYA1: isolation, characterization, mapping, expression and association analysis with carcass traits. Animal Genetics 40: 255 - 261.
Wang XX, Xue CY, Wang XN, Liu HL, Xu YX, Zhao RQ, Jiang Z, Dodson MV, Chen J. 2009. Differential display of expressed genes reveals a novel function of SFRS18 in regulation of intramuscular fat deposition. International Journal of Biological Sciences 5: 28 - 33.
Hausman GJ, Dodson MV, Ajuwon K, Azain M, Barnes KM, Guan LL, Jiang Z, Poulos SP, Sainz RD, Smith S, Spurlock M, Novakofski J, Fernyhough ME, Mersmann H. 2009. Board Sponsored Invited Review: Domestic animal carcass composition: The biology and regulation of preadipocytes and adipocytes. Journal of Animal Science 87:1218-1246.
Kunej T, Wu X-L, Michal JJ, Milosevic-Berlic T, Jiang Z, Dovc P. 2009. The porcine mitochondrial transcription factor A gene: molecular characterization, radiation hybrid mapping and genetic diversity among 12 pig breeds. American Journal of Animal and Veterinary Sciences 4: 129-135.