03/03/2004

Aquaculture:



Argue, B., Liu, Z.J., and Dunham, R.A. 2003. Dress-out and fillet yields of channel catfish, Ictalurus punctatus, blue catfish, I. furcatus, and their F1, F2 and backcross hybrids. Aquaculture 228, 81-90.



Cnaani A, Lee B-Y, Ron M, Hulata G, Kocher TD, and Seroussi E. 2003. Linkage mapping of major histocompatibilty complex class I loci in tilapia (Oreochromis spp.). Animal Genetics 34:390-391.



He, C., Chen, L., Simmons, M., Li, P., Kim, S., and Liu, Z.J. 2003. Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis. Animal Genetics 34, 445-448.



Jenny, M. J., A. H. Ringwood, et al. (2002). "Potential indicators of stress response identified by expressed sequence tag analysis of hemocytes and embryos from the American oyster, Crassostrea virginica." Marine Biotechnology 4: 81-93.



Lee B-Y, Penman, DJ and Kocher TD. 2003. Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis. Animal Genetics 34(5): 379-383.



Li, L. and X. Guo. 2003. AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Marine Biotechnology, in press.



Liu, Z.J. 2003. A review of catfish genomics: progress and perspectives. Comparative and Functional Genomics 4, 259-265.



Liu, Z.J., Karsi, A., Li, P., Cao, D., and R. Dunham. 2003. An AFLP-Based Genetic Linkage Map of Channel catfish (Ictalurus punctatus) Constructed by Using an Interspecific Hybrid Resource Family. Genetics 165, 687-694.



Mickett, K., Morton, C., Feng, J., Li, P., Simmons, M., Dunham, R.A., Cao, D., and Liu, Z.J. 2003. Assessing genetic diversity of domestic populations of channel catfish (Ictalurus punctatus) in Alabama using AFLP markers. Aquaculture 228, 91-105.



Patterson, A., Karsi, A., Feng, J., and Liu, Z. J. 2003. Translational Machinery of Channel Catfish: II. Complementary DNA and Expression of the Complete Set of 47 60S Ribosomal Proteins. Gene 305, 151-160.



Reece, K.S, Ribeiro, W.L., Gaffney, P.M., Carnegie, R.B. and Allen, S.K. Jr. Microsatellite marker development and analysis in the eastern oyster, Crassostrea virginica: Confirmation of null alleles and non-Mendelian segregation ratios. J. Heredity (in press).



Streelman, J.T. and T.D. Kocher. 2002. Microsatellite length variation is associated with prolactin expression and growth response of salt-challenged tilapia. Physiological Genomics 9:1-4.



Yu, Z. and X. Guo. 2003. Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin. Biol. Bull. 204: 327?338.



Cattle:



Adelson, D.L., Cam, G.R., DeSilva, U. and Franklin, I.R. (2004) Gene Expression in Sheep Skin and Wool (Hair).Genomics 83 (1): 95-105.



Agca, C., C.A. Bidwell, and S.S. Donkin. (In Press) Cloning of bovine pyruvate carboxylase and 5‘‘‘‘ untranslated region variants. Animal Biotechnology.



Ashwell, M. S., D. W. Heyen, T. S. Sonstergard, C. P. Van Tassell, Y. Da, P. M. Van Raden and H. A. Lewin. 2004. Detection of quantitative trait loci affecting female fertility and milk production in ten Dairy Bull DNA Repository families. J. Dairy Sci. (In press)



Brunner, R.M., Sanftleben, H., Goldammer, T., Kühn, C., Weikard, R., Kata, S.R., Womack, J.E., and Schwerin, M.: The telomeric region of BTA18 containing a potential QTL region for health in cattle exhibits high similarity to the HSA19q region in humans. Genomics, 81:270-278, 2003.



Chowdhary, B.P., Raudsepp, T., Kata, S.R., Goh, G., Millon, L.V., Allan, V., Piumi, F., Guérin, G., Swinburne, J., Binns, M., Lear, T.L.. Mickelson, J., Murray, J., Antczak, D.F., Womack, J.E., and Skow, L.C.: The first-generation whole-genome radiation hybrid map in the horse identifies conserved segments in human and mouse genome. Genome Research, 1:742-751, 2003.



Denniston, D.J., M.G. Thomas, K.K. Kane, C.N. Roybal, L. Canales, D.M. Hallford, M.D. Remmenga, and D.E. Hawkins. 2003. Effect of Neuropeptide Y on GnRH-induced LH release from bovine anterior pituitary cell cultures derived from heifers in a follicular, luteal, or ovariectomized state. Anim. Reprod. Sci. 78:25-31.



DeSilva, U, I.R. Franklin, B. van Hest, J.F. Maddox and D.L. Adelson Systematic screening of sheep skin cDNA libraries for microsatellite sequences. J. Cytogenetics and Genome Research (in press).



Eun-Joon Lee, Terje Raudsepp, Srinivas R. Kata, David L. Adelson, James E. Womack, Loren C. Skow, Bhanu P. Chowdhary. A 1.4 Mb interval RH map of horse chromosome 17 provides detailed comparison with human and mouse homologues. Genome Research (In press).



Farber, C.R. and J. F. Medrano 2003. In silico anchoring of ESTs, genes and genomic sequence to bovine, porcine and chicken genome maps using SSLP markers. Animal Genetics 34:11-18.



Farber, C.R. and J.F. Medrano 2004. Identification of putative homology between horse microsatellite flanking sequences and cross-species ESTs, mRNAs and genomic sequences. Animal Genetics (In press)



Hamernik DL, Adelson DL (2003) USDA stakeholder workshop on animal bioinformatics: summary and recommendations. Comparative And Functional Genomics, 4 (2): 271-274.



Hamernik, D. L., H. A. Lewin, and L. B. Schook. 2003. Allerton III. Beyond Livestock Genomics. Animal Biotechnology 14:77-82.



Kim, K.-S., J.M. Reecy, W.H. Hsu, L.L. Anderson, and M.F. Rothschild. 2003. Functional and phylogenetic analyses of a melanocortin-4 receptor mutation in domestic pigs. Domestic Animal Endocrinology (In Press).



Krum, S.A., Womack, J.E., and Lane, T.F.: Bovine BRCA1 shows classic responses to genotoxic stress but low in vitro transcriptional activation activity. Oncogene, 22:6032-6044, 2003.



Kurar, E., J.E. Womack and B.W. Kirkpatrick. 2003. A radiation hybrid map of bovine chromosome 24 and comparative mapping with human chromosome 18. Animal Genetics 34:198-204.



Larkin, D. M., A. Everts-van der Wind, M. Rebeiz, P. A. Schweitzer, S. Bachman, C. Green, C. L. , Wright, E. J. Campos, L. D. Benson, J. Edwards, L. Liu, K. Osoegawa, J. E. Womack, P. de Jong, and H. A. Lewin. 2003. A cattle-human comparative map built with cattle BAC-ends and human genome sequence. Genome Research 13: 1966-1972.



Larkin, D.M., der Wind, A.E., Rebeiz, M., Schweitzer, P.A., Bachman, S., Green, C., Wright, C.L., Campos, E.J., Benson, L.D., Edwards, J., Liu, L., Osoegawa, K., Womack, J.E., de Jong, P., and Harris, A.L.: A cattle-human comparative map built with cattle BAC-ends and human genome sequence. Genome Research 13:1966-1973, 2003.



Lewin, H. A. 2004. The future of cattle genomics: the beef is here. Cytogenetics and Genome Research (in press)



McKay, S.D., White, S.N., Kata, S.R, Loan, R., and Womack, J.E.: The bovine 5? AMPK gene family: mapping and single nucleotide polymorphism detection. Mammalian Genome, 14:853-858, 2003.



Mishra, B.P. and J. M. Reecy. 2003.Mutations in the limbin gene previously associated with dwarfism in Japanese brown cattle are not responsible for dwarfism in the American Angus breed. Animal Genetics 34(4):311-2



Moody, D.E., A.J. Rosa, and J.M. Reecy. 2003. Current status of livestock DNA microarrays. AgBioTech (In Press).



Morrison, C.D., J.A. Daniel, J.H. Hampton, P.R. Buff, T.M. McShane, M.G. Thomas, and D.H. Keisler. 2003. Regulation of luteinizing hormone and growth hormone in ewes treated with Neuropeptide Y. Domestic Anim. Endocrinol. 24:69-80.



Narro, L.A. , M.G. Thomas, G.A. Silver, K.J. Rozeboom, and D.H. Keisler. 2003. Body composition, leptin, and the leptin receptor and their relationship to the growth hormone (GH) axis in wethers treated with zeranol. Domest. Anim. Endocrinol. 24:243-255.



Potts, J.K., S.E. Echternkamp, T.P.L. Smith, and J.M. Reecy. 2003. Characterization of Gene Expression In Double-Muscled and Normal-Muscled Bovine Embryos. Animal Genetics 34, 438?444



Schwerin, M., Czernek-Schafer, D., Goldammer, T., Kata, S.R., Womack, J.E., Pareek, R., Pareek, C., Krzysztof, W., and Brunner, R.M.: Application of disease-associated differentially expressed genes - Mining for functional candidate genes for mastitis resistance in cattle. Genet. Sel. Evol., 35:S19-S34, 2003.



Soller, M. and J.M. Reecy. 2003. QTL Mapping and Cloning in Beef Cattle. AgBioTech (In Press).



White, S.N., Kata, S.R., and Womack, J.E.: Comparative fine maps of bovine toll-like receptor 4 and toll-like receptor 2 regions. Mammalian Genome, 14:149-155, 2003.



White, S.N., Taylor, K.H., Abbey, C.A., and Gill, C.A., and Womack, J.E.: Haploytype viaration in bovine Toll-like receptor 4 and computational predication of a positively selected ligand-binding domain. Proc. Natl. Acad. Sci. USA 100:10364-10369, 2003.



Horse:



Ainsworth, D.M., Appleton, J.A., Eicker, S.W., Luce, R., Flaminio, J.B.F., Antczak, D.F. (2003a) The effect of strenuous exercise on mRNA concentration of interleukin-12, interferon-gamma and interleukin-4 in equine pulmonary and peripheral blood mononuclear cells. Vet Immunol. Immunopath. 91:61-71.



Ainsworth, D.M., Grunig, G., Matychak, M.B., Young, J., Wagner, B., Erb, H.N., and Antczak, D.F. (2003b) Recurrent airway obstruction (RAO) in horses is characterized by IFN-g and IL-8 production in bronchoalveolar lavage cells. Vet Immunol. Immunopath. 96:83-91.



Bryan, T.M., C.A. Abbey, T. Raudsepp, B.P. Chowdhary, C.A. Gill, T.L. Blanchard, N.H. Ing and T.H.Welsh, Jr. ( 2003) Characterization of equine bacterial artificial chromosomes (BACs) relevant to endocrine and immune system regulation. J. Anim. Sci. 81(Suppl.1):102-103.



Chowdhary, B.P., Raudsepp, T., Kata, S.R., Goh, G., Millon, L.V., Allan, V., Piumi, F., Guérin, G., Swinburne, J., Binns, M., Mickelson, J., Murray, J., Antczak, D.F., Womack, J.E., Skow, L.C. (2003) The first generation whole genome radiation hybrid map in the horse identifies conserved segments in human and mouse genomes. Genome Research 13:742-751.



Chowdhary B.P. & Bailey E. (2003) Equine Genomics: Galloping to new frontiers. Cytogenetics & Genome Research, in press.



Curik,I., Fraser,D., Eder,C., Achmann,R., Swinburne,J., Binns,M., Crameri,R., Brem,G., Sölkner,J. and Marti,E. (2003) Association between the MHC gene region and variation of serum IgE levels against specific mould allergens in the horse. Genetics Selection Evolution 35: S177-S190.



Gallagher PC, Morrison S, Bernoco D & Bailey E. (2003) Measurement of back curvature in American Saddlebred horses: structural and genetic basis for early-onset lordosis. The Journal of Equine Veterinary Science 23: 71-76.



Guérin, G., Bailey, E., Bernoco, D., Anderson, I., Antczak, D.F., Bell, K., Biros, I., Bowling, A.T., Brandon, R., Cholewinski, G., Colling, D., Eggleston, M., Flynn, J., Gralak, B., Hasegawa, T., Ketchum, M., Lindgren, G., Lyons, L., Millon, L.V., Mariat, D., Murray, J., Neau, A., Røed, K., Sandberg, K., Skow, L.C., Tammen, I., Van Dyk, E., Weiss, B., and Ziegle, J. (2003) The Second Iteration of the International Equine Gene Mapping Workshop: Half-Sibling Linkage Map. Animal Genetics 34:161-168.



Gustafson A.L., Tallmadge R.L., Ramlachan N., Miller D., Bird H., Antczak D.F., Raudsepp T., Chowdhary B.P., and Skow L.C. (2003) An ordered BAC Contig Map of the Equine Major Histocompatibility Complex. Cytogenetics & Genome Research (in press).



Hamernik DL, Adelson DL (2003) USDA stakeholder workshop on animal bioinformatics: summary and recommendations. Comparative And Functional Genomics, 4 (2): 271-274.



Lee, E-J, Raudsepp T., Kata S.R., Adelson D., Womack J.E., Skow L.C., Chowdhary B.P. (2003) A 1.4 Mb interval RH map of horse chromosome 17 provides detailed comparison with human and mouse homologues. Genomics (in press).



Mariat D, Taourit S, Guérin G. (2003) A mutation in the MATP gene is associated to the cream coat colour in the horse. Genetics, Selection and Evolution 35:119-133.



Marti, E., Horohov, D.W., Antczak D.F., Lazary S., Lunn D.P. (2003) Advances in equine immunology: Havemeyer workshop reports from Santa Fe, New Mexico, and Hortobagy, Hungary. Vet. Immunol. Immunopath. 91:233-43.



Mickelson, J.R., Wu J.T., Morrison L.Y., Swinburne J.E., Binns M.M., Reed K.M., Alexander L.J. (2003) Eighty-three previously unreported equine microsatellite loci. Animal Genetics 34: 71-74.



Milenkovic D, Chaffaux St, Taourit S, Guérin G. (2003) A mutation in the LAMC2 gene causes the Herlitz junctional epidermolysis bullosa (H-JEB) in two French draft horse breeds. Genetics, Selection and Evolution 35: 249-256.



Mousel M.R., Harrison L., Donahue M. and E. Bailey (2003) Molecular typing of transferrin from paraffin embedded tissues of thoroughbred foals that succumbed to Rhodococcus equi. Vet Lab Investigation 15:470-472.



Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E (2003). FISH analysis comparing genome organization in the domestic horse (Equus caballus) to that of the Mongolian Wild horse (E. przewalskii). Cytogenetic and Genome Research (in press).



Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E (2003). Homologous fission event(s) implicated for chromosomal polymorphisms among 5 species in the genus Equus. Cytogenetic and Genome Research (in press).



Raudsepp T., Lee E.J., Kata S., Brinkmeyer C., Mickelson J.R., Womack J.E., Skow L.C., Chowdhary B.P. (2003). Exceptional conservation of horse human gene order on X chromosome revealed by high resolution radiation hybrid mapping. PNAS (in press).



Swinburne J.E., Turner A., Alexander L.J., Mickelson J.R., and Binns M.M. (2003). Characterization and linkage map assignments for 61 new horse microsatellite loci (AHT49-109). Animal Genetics 34, 65-68.



Takahashi, T., Yawata, M., Raudsepp, T., Lear, T. L., Chowdhary, B. P., Antczak, D. F., and Kasahara, M. Natural killer cell receptors in the horse: evidence for the existence of multiple transcribed LY49 genes. European Journal of Immunology, in press.



Tallmadge, R.L., Lear, T.L., Johnson, A.K., Guérin, G., Millon, L.V., Carpenter, S.L. and Antczak, D.F. (2003) Characterization of the ??-2-microglobulin gene of the horse. Immunogenetics 54:725-733.



Tozaki T, Takezaki N, Hasegawa T, Ishida N, Kurosawa M, Tomita M, Saitou N, and Mukoyama H. (2003) Microsatellite variation in Japanese and Asian horses and their phylogenetic relationship using a European horse outgroup. Journal of Heredity 94(5): 374-80.



Wagner, B., Greiser-Wilke, I., and Antczak, D.F. (2003) Characterization of the horse (Equus caballus) IGHA gene. Immunogenetics 55:552-560.



Wagner M., Goh G., Wu J.T., Raudsepp T., Morrison L.Y., Alexander L.J., Skow L.C., Chowdhary B.P., Mickelson J.R. (2003). Radiation hybrid mapping of 75 previously unreported equine microsatellite loci. Animal Genetics, in press.



Wagner M, Goh G, Wu JT, Raudsepp T, Morrison LY, Alexander LJ, Skow LC, Chowdhary B.P., Mickelson J.R. (2003). Radiation hybrid mapping of 65 previously unreported equine microsatellite loci. Animal Genetics, submitted.



Ward TL, Valberg SJ, Lear T, Guerin G, Milenkovic D, Swinburne J, Binns MM, Chowdhary BP, Raudsepp R, Skow S and Mickelson JR (2004) Genetic mapping of GBE1 and its association with glycogen storage disease IV in American Quarter Horses. Cytogenetics and Genome Research, in press.



Ward TL, Valberg SJ, and Mickelson JR Glycogen branching enzyme (GBE1) mutation causing fatal glycogen storage disease IV in American Quarter Horse foals. Mammalian Genome, submitted.



Ward TL, Valberg SJ, Lear TL, Guerin G, Milenkovic D, Swinburne J, Binns MM, Chowhary BP, Raudsepp T, Skow L, Mickelson JR (2003). Mapping of GBE1 and flanking human chromosome 3p11-p12 genes to equine chromosome 26. Cytogenetic and Genome Research, in press.



Sheep:



Agca, C., C.A. Bidwell, and S.S. Donkin (2004) Cloning of bovine pyruvate carboxylase and 5‘‘‘‘ untranslated region variants. Anim. Biotech. (in press).



Cockett, N. E. (2003) The genetic mutation responsible for spider lamb syndrome in sheep. Suffolk News 9(45):25.



Cockett, N. E. (2003) Current status of the ovine genome map. Cytogenetic and Genome Research (in press).



Cockett, N. E. (2003) Radiation hybrid mapping and its application to the ovine genome. INRA Informer, May 2003.



Cockett, N. E., C. A. Bidwell, C. Charlier, M. Smit, K. Sergers, T. L. Shay, L. Karim, G. D. Snowder and M. Georges (2003) Muscle enhanced traits in sheep. Progess in Obesity Research 9:272-274.



Farber, C.R. and J. F. Medrano (2003) In silico anchoring of ESTs, genes and genomic sequence to bovine, porcine and chicken genome maps using SSLP markers. Anim. Genet. 34:11-18.



Georges, M., C. Charlier and N. E. Cockett (2003) Polar overdominance at the ovine callipyge locus supports trans interaction between the products of reciprocally imprinted genes. Trends in Genetics 19:248-252.



Guo, X., Kupfer, D. M., Fitch, G. Q., Roe, B. A., and DeSilva, U (2003) Identification of a novel lysine- 171 allele in the ovine prion protein (PRNP) gene. Anim.Genet. 34:303-305.



Notter, D. R., N. E. Cockett and T. L. Shay (2003) Evaluation of melatonin receptor 1a as a candidate gene influencing reproduction in an autumn-lambing sheep flock. J. Anim. Sci. 81:912-917.



Smit, M., K. Segers, T. Shay, F. Baraldi, G. Gyapay, G. Snowder, M. Georges, N. Cockett and C. Charlier (2003) Mosaicism of Solid Gold supports the causality of the SNP in determinism of the callipyge phenotype. Genetics 163:453-456.



DeSilva, U*., Guo, X., Kupfer, D. M., Fernando, S. C., Pillai, A. T. V., Najar, F. Z., So, S., Fitch, G. Q., and Roe, B. A. (2004) Allelic variants of ovine prion protein gene (PRNP) in Oklahoma sheep. (In press).



Farber, C.R. and J.F. Medrano (2004) Identification of putative homology between horse microsatellite flanking sequences and cross-species ESTs, mRNAs and genomic sequences. Anim. Genet. (In press).



Laughlin, A. M., D. F. Waldron, B. F. Craddock, G. R. Engdahl, R. K. Dusek, J. E.

Huston, C. J. Lupton, D. N. Ueckert, T. L. Shay and N. E. Cockett (2004) Use of

DNA markers to determine paternity in a multiple-sire mating flock. Sheep and

Goat Res. J. (In press).



Swine:



Bannerman, D., Paape, M.J., Lunney, J.K. 2004.Immunity: Innate. In Encyclopedia of Animal Science; Pond, W.G., Bell, A.W. Eds.; Marcel Dekker, Inc., New York.



Bertani G, Gladney C, Johnson RK, Pomp D (2004) Evaluation of gene expression in pigs selected for enhanced reproduction. II: Anterior Pituitary. J Anim Sci (In Press).



Bertani G, Johnson RK, Pomp D (2003) Mapping of porcine ESTs putatively differentially expressed in anterior pituitary. Animal Genetics 34:132-134.



Bidwell, C. A., M. Spurlock, and D. E. Moody. 2003. Serial analysis of gene expression of pig adipose and muscle tissue. Plant and Animal Genome Conference XI, San Diego, CA. January, 2003. www.intl-pag.org/11/abstracts/P01_P69_XI.html



Blowe, C. D., E. J. Eisen, O. W. Robison, and J. P. Cassady. 2003. Characterization of a line of pigs selected for increased litter size for genes known to affect reproduction. Abstract. Accepted. American Society of Animal Science, Midwest Sectional Meetings.



Caetano A, RK Johnson, D Pomp (2003) Generation and Sequence Characterization of a Normalized cDNA Library from Swine Ovarian Follicles. Mammalian Genome 14:65- 70.



Chaiwong, N., J.C.M. Dekkers, R.L. Fernando and M.F. Rothschild. 2002. Introgressing Multiple QTL through Backcross Breeding Programs. Swine Research Reports. Iowa State University.



Ciobanu, D.C., S.M. Lonergan, M. Malek, J.R. Woollard, E.J. Lonergan and M.F. Rothschild. 2002. New Alleles in the Calpastatin Gene Associated with Improved Tenderness in Pigs. Swine Research Reports. Iowa State University



Dawson H., Nishi S., Beshah E., Solano-Aguilar G., Zarlenga D., Urban J.F., Lunney J.K. 2002. Functional genomic assessment of porcine disease resistance: real time assays of porcine immune gene expression. Proceedings 7th World Congress on Genetics Applied to Livestock Production. #13-41.



Dawson, Harry, Sandra Nishi, Ethiopia Beshah, Gloria Solano-Aguilar, Dante Zarlenga, Joseph F. Urban, Joan Lunney. 2003. Use of real-time assays of immune gene expression to assess the genetic basis of disease resistance. http://www.intl-pag.org/11/abstracts/W52_W330_XI.html



Ernst, C.W., N.E. Raney, V.D. Rilington, G.A. Rohrer, J.A. Brouillette and P.J. Venta. 2004. Mapping of the FES and FURIN genes to porcine chromosome 7. Anim. Genet. In Press.



Farber, C.R., N.E. Raney, D.L. Kuhlers, K. Nadarajah and C.W. Ernst. 2003. Identification of genetic markers between two pig populations using representational difference analysis. Anim. Biotech. 14:87-102.



Farber, C.R., N.E. Raney, V.D. Rilington, P.J. Venta and C.W. Ernst. 2004. Comparative mapping of genes flanking the human chromosome 12 evolutionary breakpoint in the pig. Cytogenet. Genome Res. In Press.



Flaherty L, O Abiola, J Angel, P Avner, A Bachmanov, J Belknap, B Bennett, E Blankenhorn, D Blizard, V Bolivar, G Brockmann, K Buck , J Bureau, W Casley, E Chesler, J Cheverud, G Churchill, M Cook, J Crabbe, W Crusio, A Darvasi, G de Haan, P Demant, R Doerge, R Elliott, C Farber, J Flint, H Gershenfeld, J Gibson, W Gu, H Himmelbauer, R Hitzemann, HC Hsu, K Hunter, F Iraqi, R Jansen, T Johnson, B Jones, G Kempermann, F Lammert, L Lu, K Manly, D Matthews, J Medrano, M Mehrabian, G Mittleman, B Mock, J Mogi, X Montagutelli, G Morahan, J Mountz , H Nagase, R Nowakowski, B O‘‘‘‘Hara, A Osadchuk, B Paigen, A Palmer, J Peirce, D Pomp, M Rosemann, G Rosen, L Schalkwyk, Z Seltzer, S Settle, K Shimomura, S Shou, J Sikela, L Siracusa, J Spearow, C Teuscher, D Threadgill, L Toth, A Toye, C Vadasz, G Van Zant, E Wakeland, R Williams, H-G Zhang, Fei Zou (2003) The nature and identification of quantitative trait loci: a community?s view. Nature Genetics Reviews 4:911- 916.



Gladney C, G Bertani, MK Nielsen, D Pomp (2004) Evaluation of gene expression in pigs selected for enhanced reproduction. I: Ovarian Follicles. J Anim Sci (In Press).



Jiang, Z. and J.J. Michal. 2003. Linking porcine microsatellite markers to known genome regions by identifying their human orthologs. Genome 46:798-808.



Jiang, Z., M. Zhang, V.D. Wasem, J.J. Michal, H. Zhang and R.W. Wright Jr. 2003. Census of genes expressed in porcine embryos and reproductive tissues by mining EST database based on the human genes. Biology of Reproduction 69:1177-1182.



Jiang, Z., Xiao-Lin Wu, Ming Zhang and Raymond W. Wright Jr. (2003) In Silico Gene Expression Profiling of Basic Active Genes (BAGs) in Porcine Embryos and Reproductive tissues using a comparative gene-based approach. Computational Biology and Genome Information, Cary, North Carolina, USA.



Kim, K.S., N. T. Nguyen, J. M Reecy, L. L. Anderson, and M. F. Rothschild. 2002. Molecular genetic studies of porcine genes for obesity. Swine Research Reports. Iowa State University.



King, A.M., Z. Jiang, J.P. Gibson, C.S. Haley and A.L. Archibals. 2003. Mapping Quantitative Trait Loci Affecting Female Reproductive Traits on Porcine Chromosome 8. Biology of Reproduction 68: 2172-2179.



Lunney, J.K. 2003. Are there immune gene alleles that determine whether a pig will be healthy? Genetics of Pig Health Symposium, Des Moines, IA.



Lunney, J.K. 2003. In Search of Disease-Resistant Pigs. National Hog Farmer, Apr 15, 2003, pp.30-34.



Lunney, J.K., Paape, M.J., Bannerman, D. 2004. Immunity: Acquired. In Encyclopedia of Animal Science; Pond, W.G., Bell, A.W. Eds.; Marcel Dekker, Inc., New York.



Malek, M., D. C. Ciobanu, and M. F. Rothschild. 2003. Genetic and physical mapping of ACACB, PPP1CC and GPR49 genes on porcine chromosomes 5 and 14 help to define a break point on human chromosome 12. Proceedings Plant & Animal Genome XI meeting, January 11-15, San Diego, CA.



Martens G W, Lunney J K, Baker J E, Smith D M. 2003. Rapid Assignment of Swine Leukocyte Antigen (SLA) Haplotypes in Pedigreed Herds using a Polymerase Chain Reaction Based Assay. Immunogenetics. 55: 395-401.



N.-T. Nguyen, K.-S. Kim, H. Thomsen, J. Helm and M. F. Rothschild 2003. Investigation of candidate gene for growth and fatness QTL on the pig chromosome 7. Proceedings Plant & Animal Genome XI meeting, January 11-15 San Diego, CA.



Nishi, S., Dawson, H., Dubey, J.P., Urban, J.F., Lunney, J. 2003. Immune responses controlling Toxoplasma gondii infection in pigs. Proceedings of the American Association of Veterinary Parasitologists, 2003. v.48. Abstract. p.52.



Otieno, C.J., S. Vleck, C. Jelks, K.-S. Kim, N. T. Nguyen and M. F. Rothschild. 2003. Mapping of diabetes-related genes in the pig. Proceedings Plant & Animal Genome XI meeting, January 11-15, San Diego, CA.



Pan, P.-W., K. Li, C.K. Tuggle, M. Yu, B. Liu, and S.-H. Zhao. 2003. Sequencing, tissue distribution and physical mapping of the porcine homologue of cardiomyopathy associated 3 (CMYA3). Anim. Genet. 34:1-4.



Patil, A., Y. Sang, K. Rune, F. Blecha, J.E. Minton, and G. Zhang. 2003. Porcine Innate Immunity: Distinct Tissue Expression and Transcriptional Regulation Patterns of Porcine Beta-Defensin-1 and ?2. Proceedings of the 84th Annual Meeting of the Conference of Research Workers in Animal Diseases (CRWAD), Chicago, IL.



Pomp D, Allan MF, Wesolowski S. Quantitative Genomics: Exploring the genetic architecture of complex trait predisposition. J Anim Sci (In Press).



Risatti GR, D Pomp, RO Donis (2003) Patterns of cellular gene expression in cells infected with cytopathic or non-cytopathic bovine diarrhea virus. Animal Biotechnology 14:31-49.



Rocha J, Eisen EJ, Van Vleck DL, Pomp D (2004) A large sample QTL study in mice. I: Growth. Mammalian Genome (In Press)



Rocha J, Eisen EJ, Van Vleck DL, Pomp D (2004) A large sample QTL study in mice. II: Body Composition. Mammalian Genome (In Press)



Rothschild, M.F. 2003. Advances in pig genomics and functional gene discovery. Comp. Funct. Genom. 4:266-277.



Rothschild, M.F. 2003. Approaches and Challenges in Measuring Genetic Diversity in Pigs. Archivos de Zootecnia 52:129-135



Thomsen, H., J. C. M. Dekkers, and M. F. Rothschild. 2002. Detection and characterization of QTL for growth and meat quality traits in the Berkshire-Yorkshire cross. Swine Research Reports. Iowa State University



Tuggle C, Green JA, Fitzsimmons C, Woods R, Prather RS, Malchenko S, Soares MB, Tack D, Robinson N, O‘‘‘‘Leary B, Scheetz T, Casavant T, Pomp D, Edeal JB, Zhang Y, Rothschild MF, Garwood K, Beavis W (2003) EST-Based Gene Discovery in Pig: Virtual Expression Patterns and Comparative Mapping to Human. Mammalian Genome 14:565-579.



Tuggle, C.K., J. A. Green, C. Fitzsimmons, R. Woods, R. S. Prather, S. Malchenko, M. B. Soares, D. Tack, N. Robinson, B. O‘‘‘‘Leary, T. Scheetz, T. Casavant, D. Pomp, J. B. Edeal, Y. Zhang, M. F. Rothschild, K. Garwood, W. Beavis .2003. EST-Based Gene Discovery in Pig: Virtual Expression Patterns and Comparative Mapping to Human, Mammal. Genome 14:565-579



Walker, S. E., O.W. Robison, C.S. Whisnant, and J.P. Cassady. Effect of selection for testosterone production on testicular morphology and daily sperm production in pigs. J. Anim Sci.. 81(Suppl. 1), 23 Jun 2003



Wesolowski S, Allan MF, Nielsen MK, Pomp D (2003) Evaluation of hypothalamic gene expression in mice selected for heat loss. Physiological Genomics 13:129-137.



Wesolowski, S.R., N.E. Raney and C.W. Ernst. 2004. Developmental changes in the fetal pig transcriptome. Physiol. Genomics. In Press.



Zhao, H., M. F. Rothschild, R. L. Fernando, J. C.M. Dekkers 2003. Tests of candidate genes in QTL mapping resource populations. Mammal. Genome 14:472-482.



Zhao, S.-H., D. Nettleton, W. Liu, C. Fitzsimmons, C.W. Ernst, N.E. Raney, and C.K. Tuggle. 2003. Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle. J. Anim. Sci. 81:2179-2188.



Zhao, S-H., D. Nettleton, W. Liu, C.W. Fitzsimmons, C.W. Ernst, N.E. Raney and C.K. Tuggle. 2003. Complementary DNA macroarray analysis of differential gene expression in porcine fetal and postnatal muscle. J. Anim. Sci. 81:2179-2188.

03/16/2006

Aquaculture
Catfish

Bao B, Peatman E, Li P, He C, and Liu Z.J. 2005. Catfish hepcidin gene is expressed in a wide range of tissues and exhibits tissue-specific upregulation after bacterial infection. Developmental and Comparative Immunology 29:939-950.
Bao B., Yang G, Liu ZJ, Li s, Wang Z, Ren D. 2005. Isolation of Sfrs3 gene and its differential expression during metamorphosis involving eye migration of Japanese flounder Paralichthys olivaceus. Biochimica et Biophysica Acta 1725: 64-70.

Baoprasertkul P., He C., Peatman E., Zhang S., Li P., Liu Z.J. 2005. Constitutive expression of three novel catfish CXC chemokines: homeostatic chemokines in teleost fish. Molecular Immunology 42:1355-1366.

Chen, L., He, C., Baoprasertkul, P., Xu, P., Li, P., Serapion, J., Waldbieser G., Wolters, W., Liu, Z.J. 2005. Analysis of a catfish gene resembling interleukin-8: cDNA cloning, gene structure, and expression after infection with Edwardsiella ictaluri. Developmental and Comparative Immunology 29, 135-142.

Clay LA, Wang SY, Wolters WR, Peterson BC GC Waldbieser. 2005. Molecular characterization of the insulin-like growth factor-I (IGF-I) gene in channel catfish (Ictalurus punctatus). Biochim Biophys Acta 1731(3):139-148.

Hikima, J., D.L. Middleton, M.R. Wilson, N.W. Miller, L.W. Clem and G.W. Warr. 2005. Regulation of immunoglobulin gene transcription in a teleost fish: identification, expression and functional properties of E2A in the channel catfish. Immunogenetics 57: 273-282.

Hikima, J., M.L. Lennard, M.R. Wilson, N.W. Miller, L.W. Clem and G.W. Warr. 2005. Evolution of vertebrate E-protein transcription factors: comparative analysis of the E-protein gene family in Fugu rubripes and humans. Physiological Genomics 21: 144-151.

Karsi A and GC Waldbieser. 2005. Linkage mapping of the channel catfish proopiomelanocortin (POMC ) gene. Anim Genet.36(2):171-173.

Karsi A, Waldbieser GC, Small BC and WR Wolters. 2005. Genomic structure of the proopiomelanocortin gene and expression during acute low-water stress in channel catfish. Gen Comp Endocrinol.143(2):104-112.

Karsi A, Wolters WR, and GC Waldbieser. 2005. Assignment of immune-related genes to the channel catfish, Ictalurus punctatus, genetic map. Anim Genet. 36(6):502-506.

Kountikov, E., M. Wilson, S. Quiniou, N.W. Miller, L.W. Clem and E. Bengtén. 2005. Genomic organization of the channel catfish CD45 functional gene and CD45 pseudogenes. Immunogenetics 57: 364-383.

Li RW, Silverstein PS and GC Waldbieser. 2005 Genomic characterization and expression analysis of the baculoviral IAP repeat-containing 2 (BIRC2) gene in channel catfish, Ictalurus punctatus. Anim Genet. 36(6):537-539.

Liu, Y.G., Chen, S.L., Li, B.F., Wang, Z.J., Liu Z.J. 2005. Analysis of genetic variation in selected stocks of hatchery flounder, Paralichthys olivaceus, using AFLP markers. Biochemical Systematics and Ecology 33, 993-1005.

Liu, Z.J., Peatman, E. 2006. Chemokines in fish: a rapidly expanding repertoire. In Immunology Research, (Editor, Frank Columbus), Nova Science Publishers, Inc., New York, in press.

Nonneman D. and G.C. Waldbieser. 2005. Isolation and enrichment of abundant microsatelites from a channel catfish (Ictalurus punctatus) brain cDNA library. Anim. Biotechnol. 16(2): 103-116.

Peatman, E., Bao, B., Baoprasertkul, P., and Liu, Z.J. 2005. In silico identification and expression analysis of 12 novel CC chemokines in catfish. Immunogenetics 57:409-419.

Peterson BC, Waldbieser GC and L. Bilodeau. 2005. Effects of recombinant bovine somatotropin on growth and abundance of mRNA for IGF-I and IGF-II in channel catfish (Ictalurus punctatus). J Anim Sci. 83(4):816-824.

Quiniou SM, Wolters WR and GC Waldbieser 2005. Localization of Xba repetitive elements to channel catfish (Ictalurus punctatus) centromeres via fluorescence in situ hybridization. Anim Genet. 36(4):353-354.

Xu P, Bao B, He Q, Peatman E, He C, Liu Z.J. 2005. Characterization and expression analysis of bactericidal permeability-increasing protein (BPI) antimicrobial peptide gene from channel catfish Ictalurus punctatus. Developmental and Comparative Immunology 29:865-878.

Oysters

Curole, J. P., and D. Hedgecock. 2005. Estimation of preferential pairing rates in second-generation autotetraploid Pacific oysters (Crassostrea gigas). Genetics 171:855-859.

Elfstrom, C. M., Gaffney, P. M., Smith, C. T. & Seeb, J. E. (2005). Characterization of 12 single nucleotide polymorphisms in weathervane scallop. Molecular Ecology Notes 5, 406-409.

Hedgecock, D., P. M. Gaffney, P. Goulletquer, X. Guo, K. Reece, and G. W. Warr. 2005. The case for sequencing the Pacific oyster genome. Journal of Shellfish Research 24:429-441.
Hoover, C. A. & Gaffney, P. M. (2005). Geographic variation in nuclear genes of the eastern oyster, Crassostrea virginica Gmelin. Journal of Shellfish Research 24, 103-112.

Milbury, C. A. & Gaffney, P. M. (2005). Complete mitochondrial DNA sequence of the eastern oyster Crassostrea virginica. Marine Biotechnology 7, 697-712.

Wang, L., L. Song, Y. Chang, W. Xu, D. Ni and X. Guo. 2005. A preliminary genetic map of zhikong scallop (Chlamys farreri, Jones et Preston 1904). Aquaculture Research, 36:643-653.

Wang, Y., Z. Xu and X. Guo. 2005. Chromosomal mapping of 5S ribosomal RNA genes in the eastern oyster, Crassostrea virginica Gmelin by fluorescence in situ hybridization. J. Shellfish Res., 24(4):959-964.

Wang, Y., Z. Xu. J.C. Pierce and X. Guo. 2005. Characterization of eastern oyster (Crassostrea virginica Gmelin) chromosomes by fluorescence in situ hybridization with bacteriophage P1 clones. Marine Biotechnology, 7:207-214.

Yamtich, J., M.-L. Voigt, G. Li, and D. Hedgecock. 2005. Eight microsatellite loci for the Pacific oyster Crassostrea gigas. Animal Genetics 36:524-526.

Yu, Z. and X. Guo. 2005. Genetic analysis of selected strains of the eastern oyster (Crassostrea virginica Gmelin) using AFLP and microsatellite markers. Marine Biotechnology, 6:575-586.

Salmonids

Coulibaly I, Gharbi K, Danzmann RG, Yao J, Rexroad CE, 3rd (2005) Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags. Anim Genet, 36, 309-315.

Danzmann RG, Cairney M, Davidson WS, Ferguson MM, Gharbi K, Guyomard R, Holm LE, Leder E, Okamoto N, Ozaki A, Rexroad Iii CE, Sakamoto T, Taggart JB, Woram RA (2005) A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily: Salmoninae). Genome, 48, 1037-1051.

Gahr SA, Rodriguez MF, Rexroad CE, 3rd (2005) Identification and expression profile of the ID gene family in the rainbow trout (Oncorhynchus mykiss). Biochim Biophys Acta, 1729, 64-73.

Hansen JD, Landis ED, Phillips RB (2005) Discovery of a unique Ig heavy-chain isotype (IgT) in rainbow trout: Implications for a distinctive B cell developmental pathway in teleost fish. Proc Natl Acad Sci U S A, 102, 6919-6924.

Krasnov A, Koskinen H, Pehkonen P, Rexroad CE, 3rd, Afanasyev S, Molsa H (2005) Gene expression in the brain and kidney of rainbow trout in response to handling stress. BMC Genomics, 6, 3.

Krasnov A, Koskinen H, Rexroad C, Afanasyev S, Molsa H, Oikari A (2005) Transcriptome responses to carbon tetrachloride and pyrene in the kidney and liver of juvenile rainbow trout (Oncorhynchus mykiss). Aquat Toxicol, 74, 70-81.

Phillips RB, Morasch MR, Park LK, Naish KA, Devlin RH (2005) Identification of the sex chromosome pair in coho salmon (Oncorhynchus kisutch): lack of conservation of the sex linkage group with chinook salmon (Oncorhynchus tshawytscha). Cytogenet Genome Res, 111, 166-170.

Rexroad CE, 3rd, Rodriguez MF, Coulibaly I, Gharbi K, Danzmann RG, Dekoning J, Phillips R, Palti Y (2005) Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss). BMC Genomics, 6, 54.

Salem M, Yao J, Rexroad CE, Kenney PB, Semmens K, Killefer J, Nath J (2005) Characterization of calpastatin gene in fish: its potential role in muscle growth and fillet quality. Comp Biochem Physiol B Biochem Mol Biol, 141, 488-497.

von Schalburg KR, Rise ML, Brown GD, Davidson WS, Koop BF (2005) A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary. Biol Reprod, 72, 687-699.

von Schalburg KR, Rise ML, Cooper GA, Brown GD, Gibbs AR, Nelson CC, Davidson WS, Koop BF (2005) Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray. BMC Genomics, 6, 126.

Shrimp

Almeida, J.S., D.J. McKillen, Y.A. Chen, P.S. Gross, R.W. Chapman, & G. Warr (2005). Design and calibration of microarrays as universal transcriptomic environmental biosensors. Comp. Funct. Genomics 6(3):132-137.

Cuthbertson, B.J., Y. Yang, E. Bachère, E.E. Büllesbach, P.S. Gross, & A. Aumelas (2005). Solution structure of synthetic penaeidin-4 with structural and functional comparisons to penaeidin-3. J. Biol. Chem. 280(16): 16009-16018.

McKillen, D.J., Y.A. Chen, C. Chen, M.J. Jenny, H.F. Trent III, J. Robalino, D.C. McLean Jr., P.S. Gross, R.W. Chapman, G.W. Warr1 & J.S. Almeida (2005).

Marine Genomics: a clearing-house for genomic and transcriptomic data of marine organisms. BMC Genomics 6(1):34-39.

Striped Bass

Bielmeyer G.K., Gatlin D., Isley J.J., Tomasso J., Klaine S.I. (2005). Responses of hybrid striped bass to waterborne and dietary copper in freshwater and saltwater. Comp. Biochem. Physiol. C Toxicol. Pharmacol. 140: 131-137.

Brown K.M., Baltazar G.A., Hamilton M.B. (2005). Reconciling nuclear microsatellite and mitochondrial marker estimates of population structure: population structure of Chesapeake Bay striped bass (Morone saxatilis). Heredity 94: 606-615.

Jackson L.F., McCormick S.D., Madsen S.S., Swanson P., Sullivan C.V. (2005). Osmoregulatory effects of hypophysectomy and homologous prolactin replacement in hybrid striped bass. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 140: 211-218.

Kaattari I.M., Rhodes M.W., Kator H., Kaattari S.L. (2005). Comparative analysis of mycobacterial infections in hybrid striped bass Morone saxatilis from Chesapeake Bay. Diseases of Aquatic Organisms. 67: 125-132.

Lauth X., Babon J., Stannard J.A., Singh S., Nizet V., Carlberg J.M., Ostland V.E., Pennington M.W., Norton R.S., Westerman M.E. (2005). Bass hepcidin: synthesis, solution structure, antimicrobial activities and synergism, and in vivo hepatic response to bacterial infections. JBC 280: 9272-9282.

Rhodes M.W., Kator H., McNabb A., Deshayes C., Reyrat J.M., Brown-Elliot B.A., Wallace, R. Jr., Trott K.A., Parker J.M., Lifland B., Osterhout, G., Kaattari I., Reece K., Vogelbein W., Ottinger C.A. (2005). Mycobacterium pseudoshottsi sp. nov., a slowly growing chromogenic species isolated from Chesapeake Bay striped bass (Morone saxatilis). Int. J. Syst. Evol. Microbiol. 55: 1139-1147.

Weber , Sullivan C.V. (2005). Insulin-like growth factor I induces oocyte maturational competence but not meiotic resumption in white bass (Morone chrysops) follicles in vitro: evidence for rapid evolution of insulin-like growth factor action. Biol. Reprod. 72: 1177-1186.

Tilapia
Katagiri T, Kidd C. Tomasino E, Davis JT, Wishon C, Stern JE, Carleton KL, Howe AE, Kocher TD. 2005. A BAC-based physical map of the Nile tilapia genome. BMC Genomics 6:89.

Lee BY, Lee WJ, Streelman JT, Carleton KL, Howe AE, Hulata G, Slettan A, Stern JE, Terai Y, Kocher TD. 2005. A second generation genetic linkage map of tilapia (Oreochromis spp.) Genetics 170: 237-244.

Cattle

Ashwell, M. S., D. W. Heyen, J. I. Weller, M. Ron, T. S. Sonstegard, C. P. Van Tassell and H. A. Lewin. 2005. Detection of quantitative trait loci influencing conformation traits and calving ease in Holstein-Friesian cattle. J. Dairy Sci. 88:4111-4119.

Bae, K., Mallick, B.K. and Elsik, C.G.: Prediction of protein inter-domain linker regions by a hidden Markov model. Bioinformatics 21:2264-2270, 2005.
Cobanoglu, O., P.J. Berger and B.W. Kirkpatrick. 2005. Genome screen for twinning rate QTL in four North American Holstein families. Animal Genetics 36:303-8.

Cohen-Zinder, M., E. Seroussi, D. M. Larkin, J. J. Loor, A. Everts-van der Wind, J. H. Lee, J. K. Drackley, M. R. Band, M. Shani, H. A. Lewin, J. I. Weller and M. Ron. 2005. Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein Cattle. Genome Research 15:936-944.

Dunlap, K.A., Palmarini, M., Adelson, D.L. and Spencer, T.E.: Sheep Endogenous Betaretroviruses (enJSRVs) and the Hyaluronidase 2 (Hyal2) Receptor in the Ovine Uterus and Conceptus During Pregnancy. Biol. Reprod. 73:271-279, 2005.

Everts, R. E., M. R. Band, Z. L. Liu, C. G. Kumar, L. Liu, J. J. Loor, R. Oliveira and H. A. Lewin. 2005. A 7872 cDNA microarray and its use in bovine functional genomics. Vet. Immunol. Immunopathol. 105:235-245.

Everts-van der Wind A, Larkin D.M., Green C.A., Elliott J.S., Olmstead C., Chiu R., Schein J.E., Marra M.A., Womack J.E., Lewin, H.A.: A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution. Proc Natl Acad Sci USA 102:18526-18531, 2005.

Everts-van der Wind, A., D. M. Larkin, C. A. Green, J. S. Elliott, C. A. Olmstead, R. Chiu, J. E. Schein, M. A. Marra, J. E. Womack and H. A. Lewin. 2005. A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution. Proc. Natl. Acad. Sci. (USA) 102:18526-31.

Loor, J. J., H, M. Dann, R. E. Everts, R. Oliveira, C. A. Green, N. A. Janovick-Guretzky, S. L. Rodriguez-Zas, H. A. Lewin and J. K. Drackley. 2005. Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function. Physiological Genomics 23:217-226.

Murphy, W. J., D. M. Larkin, A. Everts-van der Wind, G. Bourque, G. Tesler, L. Auvil, J. E. Beever, B. P. Chowdhary, F. Galibert, L. Gatzke, C. Hitte, S. N. Meyers, E. A. Ostrander, G. Pape, H. G. Parker, T. Raudsepp, M. B. Rogatcheva, L. B. Schook, L. C. Skow, M. Welge, J. E. Womack, S. J. OBrien, P. A. Pevzner and H. A. Lewin. 2005. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science 309:613-617.

Murphy, W.J., Larkin D.M., Everts-van der Wind A., Gurque G., Tesler G., Auvil L., Beever J.E., Chowdhary B.P., Galibert F., Gatzke L., Hitte C., Meyers S.N., Mlan D., Ostrander E.A., Pape G., Parker G.H., Raudseep T., Rogatcheva M.B., Schook L.B., Skow L.C., Welge M., Womack J.E., OBrien S.J., Pevzner P.A., and Lewin H.A.: Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science 309, 613-617, 2005.

Ross, J. W., Smith, T. K., Krehbiel, C. R., Malayer, J. R., DeSilva, U., Morgan, J. B., White, F. J., Hersom, M. J., Horn, G. W., and Geisert, R. D. (2005). Effects of grazing program and subsequent finishing on gene expression in different adipose tissue depots in beef steers. Journal of Animal Science 83, 1914-1923.

Shirley,K.L., M.G. Thomas, D.H. Keisler, D.M. Hallford, D.M. Montrose, G.A. Silver, and M.D. Garcia. Case study: A Chihuahuan Desert Brangus breeding program: feed efficiency, metabolic hormones, and puberty in developing Brangus heifers sired by bulls with differing EPD for growth and scrotal circumference. In press: Prof. Anim. Sci. Feb; 2006.

Smith, S. L., R. E. Everts, X. C. Tian, F. Du, L.-Y. Sung, S. L. Rodriguez-Zas, B.-S. Jeong, J.-P. Renard, H. A. Lewin and X. Yang. 2005. Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. Proc. Natl. Acad. Sci. (USA) 102:17582-17587.

Wang, J., Adelson, D.L., Yilmaz, A., Sze, S.H., Jin, Y. and Zhu, J.J.: Genomic Organization, Annotation, and Ligand-Receptor Inferences of Chicken Chemokines and Chemokine Receptor Genes Based on Comparative Genomics. BMG Genomics 6,:45, 2005.

White, S.N., Halbert, N.D., Taylor, K.H., Derr, J.N., and Womack, J.E.: TLR4 variation in Yellowstone bison. Animal Genetics 36:511-542, 2005.

Wu, R., C. Ma, W. Hou, P. Corva and J.F. Medrano 2005. Functional Mapping of Quantitative Trait Loci That Interact With the hg Mutation to Regulate Growth Trajectories in Mice. Genetics 17:239-249.

Yilmaz, A., Shen, S., Adelson, D.L., Xavier, S, and Zhu, J.J.: Annotation of chicken IL-10 gene cluster and effects of lipopolysaccharide stimulation on IL-10 gene expression. Animal Genetics 36:263-5, 2005.

Yilmaz, A., Shen, S., Adelson, D.L., Xavier, S, and Zhu, J.J.: Identification and sequence analyses of chicken Toll-like receptors. Immunogenetics 56:743-753, 2005.

Equine

Beck, J., B. P. Chowdhary And B. Brenig, 2005 Assignment of the equine colony stimulating factor 1 receptor gene (CSF1R) to equine chromosome 14q15-->q16 (ECA14q15-->q16) by in situ hybridization and radiation hybrid panel mapping. Cytogenet Genome Res 109: 533.

Boneker, C., D. Muller, H. Kuiper, C. Drogemuller, B. P. Chowdhary et al., 2005 Assignment of the COL8A2 gene to equine chromosome 2p15-p16 by FISH and confirmation by RH mapping. Anim Genet 36: 444-445.

Boneker, C., H. Kuiper, A. Wohlke, C. Drogemuller, B. P. Chowdhary et al., 2005 Assignment of the COL16A1 gene to equine chromosome 2p15.1-p15.3 by FISH and confirmation by RH mapping. Anim Genet 36: 262-263.

Bricker, S. J., L. S. Brault, A. Delvalle, L. V. Millon, J. D. Murray et al., 2005 Radiation hybrid and linkage mapping of six new type I markers in the horse. Anim Genet 36: 182-184.

Brooks, S. A., And E. Bailey, 2005 Exon skipping in the KIT gene causes a Sabino spotting pattern in horses. Mamm Genome 16: 893-902.

Gustafson-Seabury, A., T. Raudsepp, G. Goh, S. R. Kata, M. L. Wagner et al., 2005 High-resolution RH map of horse chromosome 22 reveals a putative ancestral vertebrate chromosome. Genomics 85: 188-200.

Hillyer, L. L., L. A. Pettitt, S. L. Debenham, J. E. Swinburne, M. M. Binns et al., 2005 Equine microsatellites associated with the COMP, LRP5 and COL1A1 genes. Anim Genet 36: 261-262.

Luis, C., E. G. Cothran, M. M. Oom And E. Bailey, 2005 Major histocompatibility complex locus DRA polymorphism in the endangered Sorraia horse and related breeds. J Anim Breed Genet 122: 69-72.

Milenkovic, D., D. Mariat, J. Swinburne, S. Chadi-Taourit, M. Binns et al., 2005 Characterization and localization of 17 microsatellites derived from BACs in the horse. Anim Genet 36: 164-166.

Penedo, M. C., L. V. Millon, D. Bernoco, E. Bailey, M. Binns et al., 2005 International Equine Gene Mapping Workshop Report: a comprehensive linkage map constructed with data from new markers and by merging four mapping resources. Cytogenet Genome Res 111: 5-15.

Perelygin, A. A., T. L. Lear, A. A. Zharkikh And M. A. Brinton, 2005 Structure of equine 2'-5'oligoadenylate synthetase (OAS) gene family and FISH mapping of OAS genes to ECA8p15-->p14 and BTA17q24-->q25. Cytogenet Genome Res 111: 51-56.

Pielberg, G., S. Mikko, K. Sandberg and L. ANDERSSON, 2005 Comparative linkage mapping of the Grey coat colour gene in horses. Anim Genet 36: 390-395.

Swinburne, J. E., M. Boursnell, G. Hill, L. Pettitt, T. Allen et al., 2006 Single linkage group per chromosome genetic linkage map for the horse, based on two three-generation, full-sibling, crossbred horse reference families. Genomics 87: 1-29.

Tallmadge, R. L., T. L. Lear And D. F. Antczak, 2005 Genomic characterization of MHC class I genes of the horse. Immunogenetics 57: 763-774.

Wittwer, C., B. P. Chowdhary And O. Distl, 2005 Radiation hybrid mapping of equine CDK2, DGKA, DNAJC14, MMP19, CTSL and GAS1. Anim Genet 36: 536-537.

Poultry

Alghamdi, A.S., D.N. Foster, C.S. Carlson, M.H.T. Troedsson. 2005. Nitric oxide levels and nitric oxide synthase expression in uterine samples from mares susceptible and resistant to persistent breeding induced endometritis. J. Reprod. Immunol. 53:230-237.

Alghamdi, A.S., D.N. Foster. 2005 Seminal DNase frees spermatozoa entangled in neutrophil extracellular traps. Biol. Reprod. 73:1174-1181.

Alghamdi, A.S., S, Madill, D.N. Foster. 2005. Seminal plasma improves fertility of frozen equine semen. Animal Reprod. Sci. 89:242-245.

Bliss, T.W., J. E. Dohms, M.G. Emara, C.L. Keeler, Jr. 2005. Gene expression profiling f avian macrophage activation. Vet. Immunol. Immunopathol., 105:289-99.

Borwornpinyo, S., J. Brake, P.E. Mozdziak, J.N. Petitte. 2005. Culture of chicken embryos in surrogate eggshells. Poultry Sci. 84:1477-1482.

Chaves, L.D., J.A. Rowe, K.M Reed. 2005. Survey of a cDNA library from the turkey (Meleagris gallopavo). Genome, 48:12-17.

Chen, H., Y.X. Pan, E.A. Wong, K.E. Webb, Jr. 2005. Dietary protein level and stage of development affect expression of an intestinal peptide transporter (cPepT1) in chickens. J. Nutr. 135:193-198.

Cheng, H., W. M. Muir, 2005. The effects of genetic selection for survivability and productivity on chicken physiological homeostasis. Worlds Poultry Science Journal 61: 383-397.

Christman, S.A., B.-W. Kong, M.M. Landry, D.N. Foster. 2005. Chicken Embryo Extract Mitigates Growth and Morphological Changes in a Spontaneously Immortalized Chicken Embryo Fibroblast Cell Line. Poultry Sci. 84:1423-1431.

Christman, S.A., B.-W. Kong, M.M. Landry, H. Kim, D.N. Foster. 2005 Modulation of p53 expression and its role in the conversion to a fully immortalized chicken embryo fibroblast line. FEBS Letters. 579:6705-6715.

Festucci-buselli, R. A., A. S. Carvalho-dias, M. De Oliveira-andrade, C. Caixeta-nunes, H. M. LI et al., 2005 Expression of Cyp6g1 and Cyp12d1 in DDT resistant and susceptible strains of Drosophila melanogaster. Insect Molecular Biology 14: 69-77.

Forough, R. B., Weylie, C. Patel, S. Ambrus, U.S. Singh, J. Zhu. 2005. Role of AKT/PKB signaling in fibroblast growth factor-1 (FGF-1)-induced angiogenesis in the chicken chorioallantoic membrane (CAM). J Cell Biochem 94:109-116.

Hansen, C., N. Yi, Y.M. Zhang, S. Xu, J. Gavora, H.H. Cheng. 2005. Identification of QTL for production traits in chickens. Animal Biotech. 16:67-79.

Hartman, S., G. Touchton, J. Wynn, T. Geng, N. Chong, E. Smith. 2005. Characterization of expressed sequence tags from a Gallus gallus pineal gland cDNA library. Comparative and Functional Genomics 6:301-306.

Heifetz, E. M., J.E. Fulton, N. O'Sullivan, H. Zhao, J.C.M. Dekkers, M. Soller. 2005. Extent and consistency across generations of linkage disequilibrium in commercial layer chicken breeding populations. Genetics 171: 1173-1181.

Hostetler, H.A., P. Collodi, R.H. Devlin, W.M. Muir. 2005. Improved Phytate Phosphorus Utilization by Japanese Medaka Transgenic for the Aspergillus niger Phytase Gene. Zebrafish 2:19-31.

Jurkevich, A., L.R. Berghman, L.E. Cornett and W.J. Kuenzel. 2005. Characterization and immunohistochemical visualization of the vasotocin VT2 receptor in the pituitary gland of the chicken, Gallus gallus. Gen. Comp. Endocrinol. 143:82-91.

Kuenzel, W.J., R.F. Wideman, M. Chapman, C. Golden and D.M. Hooge. 2005. A Practical method for induced moulting of caged layers that combines full access to feed and water, dietary thyroactive protein, and short day length. Worlds Poultry Sci. J. 61:599-624.

Li, H., N. Deeb, H. Zhou, C.M. Ashwell, S.J. Lamont. 2005. Chicken quantitative trait loci for growth and body composition associated with the very low density apolipoprotein-II gene. Poultry Sci. 84 (5):697-703.

McElroy, J. P., J.C.M. Dekkers, J.E. Fulton, N.P. OSullivan, M. Soller, E. Lipkin, W. Zhang, K.J. Koehler, S.J. Lamont, H.H. Cheng. 2005. Microsatellite markers associated with resistance to Mareks disease in commercial layer chickens. Poultry Sci. 84:1678-1688.

McElroy, J.P., J.C.M. Dekkers, J.E. Fulton, N.P. OSullivan, M. Soller, E. Lipkin, W. Zhang, K.J. Koehler, S.J. Lamont, Cheng, H.H. 2005. Microsatellite markers associated with resistance to Mareks disease in commercial layer chickens. Poultry Science 84:1678-1688.

Miller, M.M., C. Wang, E. Parisini, R.D. Coletta, R.M. Goto, S.Y. Lee, D.C. Barral, M. Townes, C. Roura-Mir, H.L. Ford, M.B. Brenner, C.C. Dascher. 2005. Characterization of two avian MHC-like genes reveals an ancient origin of the CD1 family. Proc Natl Acad Sci U S A. 102(24):8674-8679.

Min, W., H.S. Lillehoj, C.M. Ashwell, C.P. van Tassell, R.A. Dalloul, L.K. Matukumalli, J.Y. Han, E.P Lillehoj. 2005. Expressed sequence tag analysis of Eimeria-stimulated intestinal intraepithelial lymphocytes in chickens. Mol. Biotechnol. 30(2):143-150.

Mozdziak, P.E., J. Angerman-Steward, B. Rushton, S.L. Pardue, J.N. Petitte. 2005. Isolation of chicken primordial germ cells using fluorescence-activated cell sorting. Poultry Sci. 84:594-600.

Muir, W. M., 2005 Incorporation of competitive effects in forest tree or animal breeding programs. Genetics 170: 1247-1259.

Okumura, F., T. Shimogiri, Y. Shinbo, K. Yoshizawa, K. Kawabe, H. Mannen, S. Okamoto, H.H. Cheng, Y. Maeda. 2005. Linkage mapping of four chicken calpain genes. Anim. Sci. J. 76:121-127.

Pedra, J. H. F., R. A. Festucci-buselli, W. L. sun, W. M. Muir, M. E. scharf et.al., 2005. Profiling of abundant proteins associated with dichlorodiphenyltrichloroethane resistance in Drosophila melanogaster. Proteomics 5: 258-269.

Rathinam, T. and W.J. Kuenzel. 2005. Attenuation of gonadal response to Photostimulation following ablation of neurons in the lateral septal organ of chicks. Brain Res. Bull. 64:455-461.

Reed, K.M., 2005. In silico comparative mapping of 278 genomic survey sequences (GSS) from the turkey (Meleagris gallopavo). Animal Genet. 36:438-443.

Reed, K.M., J. Holm, M. Morisson, S. Leroux, A. Vignal. 2005. Assignment of non-informative turkey genetic markers through comparative approaches. Cytogenet Genome Res. 109:527-532.

Reed, K.M., L.D. Chaves, M.K. Hall, T.P. Knutson, D.E. Harry. 2005. A comparative genetic map of the turkey genome. Cytogenet Genome Res, 111:118-127.
Reed, K.M., T.P. Knutson, S.B. Krueth, L.R. Sullivan, L.D. Chaves. 2005. In silico mapping of ESTs from the turkey (Meleagris gallopavo). Animal Biotech, 16:81-102.

Rodrigue, K.L., May, B.P., Famula, T.R., M.E. Delany. 2005. Meiotic instability of chicken ultra-long telomeres and mapping of a 2.8 megabase array to the W-sex chromosome. Chromosome Research 13:581-591.

Romanov, M.N., L. Daniels, J.B. Dodgson, M. E. Delany. 2005. Integration of the cytogenetic and physical maps of chicken chromosome 17. Chromosome Research 13:215-222.

Sazanov, A. A., M. N. Romanov, B. Wardcka, A. L. Sazanova, M. Korczak, V. A. Stekolnikova, A. A. Kozyreva, A. F. Smirnov, K. Jaszczak, J. B. Dodgson. 2005. Chromosomal localization of fifteen large insert BAC clones containing three microsatellites on chicken chromosome 4 (GGA4) which refine its centromere position. Animal Genetics 36:161-163.

Schmid, M., Nanda, I., Hoehn, H., Schartl, M., Haaf, T., Buerstedde, J.-M., Arakawa, H., Caldwell, R.B., Weigend, S., Burt, D.W., Smith, J., Griffin, D.K., Masabanda, J., Groenen, M.A.M., Crooijmans, R.P.M.A., Vignal, A., Fillon, V., Morisson, M., Pitel, F., Vignoles, M., Garrigues, A., Gellin, J., Rodionov, A.V., Galkina, S.A., Lukina, N.A., Ben-Ari, G., Blum, S., Hillel, J., Twito, T., Lavi, U., David, L., Feldman, M.W., Delany, M.E., Conley, C.C., Fowler, V.M., Hedges, S.B., Godbout, R., Katyal, S., Smith, C., Hudson, Q., Sinclair, A., Mizuno, S. 2005. Second report on chicken genes and chromosomes. Cytogenetic and Genome Research 109:415-479.

Smith, E.J., D.W. Burt, O. Pourqoui. 2005. Poultry genomics puts meat on the table: chicken genomics and development workshop. Comp. and Func. Genomics 6:311-316.

Smith, E.J., L. Shi, Z. Tu. 2005. Gallus gallus aggrecan gene-based phylogenetic analysis of selected avian taxonomic groups. Genetica 124:23-32.

Smith, E.J., T. Geng, D. Kamara, K.C. Lin, S. Hartman. 2005. Avian genomes: resources for biomedical research. Current Genomics 6: 75-80.

Smith, E.J., T. Geng, P. Sponenberg, W. Pierson, C.T. Larsen. 2005. Molecular analysis of the relatedness of five domesticated turkey strains. Biochem. Genetics 43:35-47.

Song, Y., S. DCosta, S.L. Pardue, J.N. Petitte. 2005. Production of germline chimeric chickens following the administration of a busulfan emulsion. Molec. Reprod. Dev. 70:438-444.

Swanberg, S.E., M.E. Delany. 2005. Differential expression of genes associated with telomere length homeostasis and oncogenesis in an avian model. Mechanisms of Aging and Development 126:1060-1070.

The Avian Brain Nomenclature Consortium. 2005. Jarvis, E.D., O. Güntürkün, L. Bruce, A. Csillag, H. Karten, W. Kuenzel, L. Medina, G. Paxinos, D.J. Perkel, T. Shimizu, G. Striedter, J. Martin Wild, G.F. Ball, J. Dugas-Ford, S.E. Durand, G.E. Hough, S. Husband, L. Kubikova, D.W. Lee, C.V. Mello, A. Powers, C. Stang, T.V. Smulders, K. Wada, S.A. White, K. Yamamoto, J.Yu, A. Reiner and A.B. Butler. Avian brains and a new understanding of vertebrate brain evolution. Nature Rev. Neurosci. 6(2): 151-159.

Van, L., Y.X. Pan, E.A. Wong, J.R. Bloomquist, K.E. Webb, Jr. 2005. Developmental regulation of a turkey intestinal peptide transporter (PepT1). Poult. Sci. 84:75-82.

Swine

Bünger L., R. M. Lewis, M. F. Rothschild, A. Blasco, U. Renne, and G. Simm. 2005. Relationships between quantitative and reproductive fitness traits in animals. Philosophical Transactions of the Royal Society Biological Sciences 360:1489-1502.

Caetano, A.R., Edeal, J.B., Burns, K., Johnson, R.K., C.K. Tuggle. Pomp D. (2005) Physical Mapping of Genes in the Porcine Ovarian Transcriptome. Animal Genetics 36:322-330.

Dawson HD, Beshah E, Nishi S, Solano-Aguilar G, Morimoto M, Zhao A, Madden KB, Ledbetter TK, Dubey JP, Shea-Donohue T, Lunney JK, Urban, JF Jr. 2005. Localized multi-gene expression patterns support an evolving Th1/Th2-like paradigm in response to infections with Toxoplasma gondii and Ascaris suum in pigs. Infection and Immunity. 73: 1116-1128.

Demeure, O., D. Pomp, M. F. Rothschild, D. Milan, and C. K. Tuggle. 2005. Large-scale EST mapping improves the comparative maps for SSC1 and SSC7 with the human genome. Animal Genetics 36:381-389.

Gerrits RJ, Lunney JK, Johnson LA, Pursel VG, Kraeling RR, Rohrer GA, Dobrinsky JR. 2005. A vision for artificial insemination and genomics to improve the global swine population. Theriogenology. 63: 283-299.

Griffin KB, Michal JJ, Fox LK, Gaskins CT, Jiang Z. 2005. Fine mapping of the bovine chromosome 22q24 region that harbors antimicrobial genes and a QTL for somatic cell score. Animal Genetics 36: 448-450.

Hittmeier, L., R Lensing, L Grapes, M.F. Rothschild, C.H. Stahl. The Impact of Genetics and Phosphorous Nutrition on Bone Metabolism. 2005 Experimental Biology/International Union of Physiological Sciences Meeting. FASEB JOURNAL 19 (4): A63-A63 Part 1 Suppl. S MAR 4 2005

Hu, Z.-L., K. Glenn, A. M. Ramos, C. J. Otieno, and M. F. Rothschild. 2005. Expeditor: A pipeline for designing pig primers using human gene structure and pig EST information. J. Heredity 96:1-3

Hu, Z.L., S. Dracheva, W. Jang, D. Maglott, J. Bastiaansen, M. F. Rothschild and J.Reecy. 2005. A QTL resource and comparison tool for pigs: PigQTLDB. Mammalian Genome 15:792-800.

Jiang Z, De S, Garcia MD, Griffin KB, Wu X-L, Xiao QJ, Michal JJ, Sharma BS, Jansen GB. 2005. An independent confirmation of a quantitative trait locus for milk yield and composition traits on bovine chromosome 26. J. Anim. Breed. Genet. 122:281-284.

Jiang Z, Kunej T, Michal JJ, Gaskins CT, Reeves JJ, Busboom JR, Dovc P, Wright Jr. RW. 2005. Significant associations of the mitochondrial transcription factor A (TFAM) promoter polymorphisms with marbling and subcutaneous fat depth in Wagyu x Limousin F2 crosses. Biochemical and Biophysical Research Communications 334:516-523.

Jiang Z, Michal JJ, Melville JS, Baltzer HL. 2005. Multi-alignment of orthologous genome regions in five species provides new insights into the evolutionary makeup of mammalian genomes. Chromosome Research 13:707-715.

Jiang Z, Wu X-L, Michal JJ, McNamara JP. 2005. Pattern profiling and mapping of the fat body transcriptome in Drosophila melanogaster. Obesity Research 13:1898-1904.

Kim J. J., M. F. Rothschild, J. Beever, S. Rodriguez-Saz and J. C. M. Dekkers. 2005. Joint analysis of two breed cross populations in pigs to improve detection and characterization of quantitative trait loci. J. Anim. Sci.83:1229-1240.

Kim, J.W., S.-H. Zhao, J.J. Uthe, S.M.D. Bearson, C.K. Tuggle. (2005) Physical mapping of eight pig genes whose expression level is acutely affected by Salmonella challenge. Animal Genetics,36: 359-362.

Kunej T, Michal JJ, Dovc P, Jiang Z. 2005. Genetic Variation of the Mitochondrial D-loop Region Containing Mitochondrial Transcription Factor A (TFAM) Binding Sites is Not Associated with Marbling in Wagyu x Limousin F2 Crosses. Acta Agriculturae Slovenica 86: 99-102.

Kunej T, Wu X-L, Milosevic Berlic T, Michal JJ, Jiang Z, Dovc P. 2005. Frequency distribution of a Cys430Ser polymorphism in peroxisome proliferator-activated receptor-gamma coactivator-1 (PPARGC1) gene sequence in Chinese and Western pig breeds. J. Anim. Breed. Genet. 122: 7  11.

Lee, S.-H., Zhao, S.-H., Recknor, J., Nettleton, D., Orley, S., Kang S.-K., Lee B.-C., Hwang W.-S., Tuggle C.K. 2005. Transcriptional profiling using a novel cDNA array identifies differential gene expression during porcine embryo elongation. Mol. Reprod. Dev. 71:129-139.

Li, S.-J., Zhao, S.-H., C,.K. Tuggle 2005. Somatic Cell hybrid and RH mapping of tachykinin 3 (TAC3) gene to porcine chromosome 5. Anim. Genet. 36:90-91.
Lunney JK. 2005. General immunology: acquired immunity. Proc. Am. Assn. Swine Vet. p. 473-478.

Otieno, C. J., J. Bastiaansen, A. M. Ramos, M. F. Rothschild. 2005. Mapping and association studies of diabetes related genes in the pig. Anim. Genet. 36:36-42.
Pan ZX, Liu HL, Chen J, Xu D, Jiang Z, Xie Z. 2005. In silico discovery of genes expressed in liver, kidney, spleen and small intestine of pigs. Asian-Aust. J. Anim. Sci. 18: 170-178.

Qu, A., L. Grapes, L. Hittmeier, M.F. Rothschild, and C.H. Stahl. Microarray analysis of the effects of phosphorus on gene expression in porcine muscle and liver. 2005 Experimental Biology/International Union of Physiological Sciences Meeting. FASEB JOURNAL 19 (5): A1499-A1499 Part 2 Suppl. S MAR 7 2005
Saalmüller A, Lunney JK, Daubenberger C, Davis W, Fischer U, Göbel TW, Griebel P, Hollemweuguer E, Lasco T, Meister R, Schuberth H-J, Sestak K, Sopp P, Steinbach F, Xiao-Wei W, Aasted B. 2005. Summary of the Animal Homologue Section of HLDA8. Cellular Immunology. 236: 51-58.

Schook, L., C. Beattie, J. Beaver, S. Donovan, R. Jamison, S. Neimi, M.F. Rothschild, M. Rutherford, D. Smith and F. Zuckermann. 2005. Swine in biomedical research: Creating the building blocks of animal Models. Animal. Biotechnology 16: 183-190.

Smith DM, Lunney JK, Ho C-S, Martens GW, Ando A, Lee J-H, Schook L, Renard C, Chardon P. 2005. Nomenclature for Factors of the swine leukocyte antigen class II system, 2005. Tissue Antigens. 66: 623-639.

Smith DM, Lunney JK, Martens GW, Ando A, Lee J-H, Ho C-S, Schook L, Renard C, Chardon P. 2005. Nomenclature for Factors of the SLA Class I System, 2004. Tissue Antigens. 65: 136-149.

Stalder, K. J., M. F. Rothschild, and S. M. Lonergan. 2005. Associations between two gene markers and indicator traits affecting fresh and dry-cured ham processing quality. Meat Science 69:451-457.

Vincent, A.L., B. J. Thacker, P. G. Halbur, M. F. Rothschild, and E. L. Thacker. 2005. The in vitro susceptibility of machrophages to porcine reproductive and respiratory syndrome virus varies between genetically diverse lines of pigs Virology Immunology 18: 506-512.

Wu X-L, MacNeil MD, De S, Xiao QJ, Michal JJ, Gaskins CT, Reeves JJ, Busboom JR, Wright Jr, RW, Jiang Z. 2005. Evaluation of candidate gene effects for beef backfat via Bayesian model selection. Genetica 125:103-113.

Zhao S-H, Recknor J, Lunney JK, Nettleton D, Kuhar D, Orley S, Tuggle CK. 2005. Validation of a first generation of porcine long oligonucleotide microarray for transcriptional profiling in the pig. Genomics. 86: 618-625.

Zhao, S.-H. C. K. Tuggle. 2005. Mapping of the porcine suppressor of cytokine signaling 3 (SOCS3) gene to chromosome 12 by using somatic cell and radiation hybrid panels. Anim. Genet. 36:88-90.


Wang, J., D. L. Adelson, A. Yilmaz, S.-H Sze, Y. Jin, J. J. Zhu. 2005. Genomic organization, annotation, and ligand-receptor binding inferences of chicken chemokines and chemokine receptor genes based on comparative genomics. BMC Genomics 6:45-32.

Yan, F., R. Angel, C. Ashwell, A. Mitchell, M. Christman. 2005. Evaluation of the broilers ability to adapt to an early moderate deficiency of phosphorous and calcium. Poultry Sci. 84(8):1232-1241.

Yilmaz, A., S. Shen, D. L. Adelson S. Xavier, J. J. Zhu. 2005. Annotation of chicken IL-10 gene cluster and effects of lipopolysaccharide stimulation on IL-10 gene expression. Animal Genetics. 36:263-5.

Yilmaz, A., S. Shen, D. L. Adelson, S. Xavier, J. J. Zhu. 2005. Identification and sequence analyses of chicken Toll-like receptors. Immunogenetics 57:1432-1211.

Zhang, H.M., L.D. Bacon, H.H. Cheng, H.D. Hunt. 2005. Development and validation of a PCR-RFLP assay to evaluate TVB haplotypes coding receptors for subgroup B and E avian leukosis viruses in White Leghorns. Avian Pathology 34:324-331.

Zhang, W, S.E. Aggrey , G.M. Pesti , R.I. Bakalli , H.M. Edwards Jr., 2005 Genetic analysis on the direct response to divergent selection for phytate phosphorus bioavailability in a randombred chicken population. Poult. Sci. 84:370-375.

Zhang, W, S.E. Aggrey, G.M. Pesti , R.I. Bakalli, H.M. Edwards Jr., 2005. Correlated responses to divergent selection for phytate phosphorus bioavailability in a randombred chicken population. Poult. Sci. 84: 536-542.

Zhao, H., D. Nettleton, M. Soller, J.C.M. Dekkers. 2005. Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTL. Genet. Res. Camb. 86:77-87.

Zhou, H., A.D. Mitchell, J.P. McMurtry, C.M. Ashwell, S.J.Lamont. 2005. Insulin-like growth factor-I gene polymorphism associations with growth, body composition, skeleton integrity, and metabolic traits in chickens. Poultry Sci. 84(2):212-219.

Sheep

Davis, E., F. Caiment, X. Tordoir, N. Cockett, M. Georges and C. Charlier (2005) RNAi-mediated allelic trans-interaction at the imprinted Peg11 locus. Current Biology 15:743-749.

Georges, M., C. Charlier, M. Smit, E. Davis, T. Shay, X. Tordoir, H. Takeda, F. Caiment and N. Cockett (2005) Toward molecular understanding of polar overdominance at the ovine callipyge locus. Cold Spring Harbor Symposia on Quantitative Biology 69:477-483.

Rodriguez, S. M. C. A. Bidwell and S. S. Donkin (2005) Translational efficiency of bovine pyruvate carboxylase 5 untranslated region mRNA variants. FASEB 19:A317.

Smit, M. A., X. Tordoir, F. Baraldi, E. Davis, G. Gyapay, N. Cockett, M. Georges and C. Charlier (2005) BEGAIN: A novel imprinted gene in the DLK1-GTL2 domain unaffected by the callipyge mutation Mamm. Genome 16:801-814.

03/18/2005

Aquaculture:
Baoprasertkul, P., Peatman, E., He, C., Kucuktas, H., Li, P., Chen, L., Simmons, M., and Liu, Z.J. 2004. Sequence analysis and expression of a CXC chemokine in resistant and susceptible catfish after infection of Edwardsiella ictaluri. Developmental and Comparative Immunology 28, 769-780.

Bilodeau, A.L. and G.C. Waldbieser. 2005. Activation of TLR 3 and TLR5 in channel catfish exposed to virulent Edwardsiella ictaluri. Developmental and Comparative Immunology, accepted for publication 12/4/2004.

Boutet, I., A. Tanguy, and D. Moraga. 2004. Characterization and expression of four mRNA sequences encoding glutathione S-transferases pi, mu, omega, and sigma classes in the Pacific oyster Crassostrea gigas exposed to hydrocarbons and pesticides. Marine Biology 146:53-64.

Chen YA, Mckillen DJ, Wu S, Jenny MJ, Chapman R, Gross PS, Warr GW, Almeida JS, (2004) Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information. BMC Bioinformatics 2004, 5:191

Chen, L., C. He, P. Baoprasertkul, P. Xu, P. Li, J. Serapion, G. Waldbieser, W. Wolters, and Z. Liu. 2004. Analysis of a catfish gene resembling interleukin-8: cDNA cloning, gene structure, and expression after infection with Edwardsiella ictaluri. Developmental and Comparative Immunology 29:135-142.

Chen, L., Jiang, H., Zhou, Z., Li, K., Li, K., Deng, G.Y. and Liu, Z.J. 2004. Purification of vitellin from the ovary of Chinese mitten-handed crab, Eriocheir sinensis, and development of an anti-vitellin ELISA. Comparative Biochemistry and Physiology B Biochemistry and Molecular Biology 138, 305-311.

Cnaani, A., Lee, B.-Y., Ron, M., Hulata, G., Kocher, T.D., Seroussi, E. 2003. Linkage mapping of major histocompatibilty complex class I loci in tilapia (Oreochromis spp.). Animal Genetics 34(5): 390-391.

Elfstrom, C. M., P. M. Gaffney, C. T. Smith, and J. E. Seeb. Characterization of 13 single nucleotide polymorphisms in the weathervane scallop. Molecular Ecology Notes, in press.

Felip, A., Fujiwara, A., Young, W.P., Wheeler, P. A., Noakes, M., Phillips, R.B. and G.H. Thorgaard. 2004. Polymorphism and differentiation of rainbow trout Y chromosomes (Genome, in press).

Gregory, D.J., G.C. Waldbieser, and B. G. Bosworth. 2004. Cloning and characterization of myogenic regulatory genes in three Ictalurid species. Animal Genetics 35:425-430.

He, C., Peatman, E., Baoprasertkul, P., Kucuktas, H., and Liu, Z.J. 2004. Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags. Immunogenetics 56, 379-387.

Hedgecock, D., G. Li, S. Hubert, K. A. Bucklin, and V. Ribes. 2004. Widespread null alleles and poor cross-species amplification of microsatellite DNA loci cloned from the Pacific oyster, Crassostrea gigas. Journal of Shellfish Research 23:379-385.

Hikima JI, Cioffi CC, Middleton DL, Wilson MR, Miller NW, Clem LW, Warr GW (2004) Evolution of Transcriptional Control of the IgH Locus: Characterization, Expression, and Function of TF12/HEB Homologs of the Catfish. J Immunol. 173:5476-5484

Hoover, C. A., and P. M. Gaffney. Geographic variation in nuclear genes of the eastern oyster, Crassostrea virginica Gmelin. Journal of Shellfish Research, in press.

Hubert, S., and D. Hedgecock. 2004. Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics 168:351-362.

Huvet, A., A. Herpin, L. Dégremont, Y. Labreuche, J.-F. Samain, and C. Cunningham. 2004. The identification of genes from the oyster Crassostrea gigas that are differentially expressed in progeny exhibiting opposed susceptibility to summer mortality.

Jenny MJ, Ringwood AH, Schey K, Warr GW, Chapman RW (2004) Diversity of metallothioneins in the American oyster, Crassostrea virginica, revealed by transcriptomic and proteomic approaches. Eur J Biochem. 271:1702-12

Karsi, A. and G.C. Waldbieser. 2004. Partial cloning of T-cell receptor alpha (TCR±) gene and assignment of TCR± and TCRß genes to the catfish linkage map. Animal Genetics 35:150-151.

Karsi, A., G.C. Waldbieser, B.C. Small, Z.J. Liu, and W.R. Wolters. 2004. Molecular cloning of proopiomelanocortin cDNA and multi-tissue mRNA expression in channel catfish. General and Comparative Endocrinology 137:312-321.

Kocabas, A., Dunham, R., Liu, Z.J. 2004. Alterations in gene expression in the brain of white catfish (Ameirus catus) in response to cold acclimation. Marine Biotechnology, in press.

Kountikov, E., M. Wilson, N.W. Miller, L.W. Clem and E. Bengtén. 2004. Organization and expression of thirteen alternatively spliced exons in catfish CD45 homologs. Dev. Comp. Immunol., 28: 1023-1035.

Lee BY, Lee WJ, Streelman JT, Carleton KL, Howe AE, Hulata G, Slettan A, Stern JE, Terai Y, Kocher TD. 2005. A second generation genetic linkage map of tilapia (Oreochromis spp.) Genetics (in press).

Lee B-Y, Hulata G, Kocher TD. 2004. Two unlinked loci controlling the sex of blue tilapia (Oreochromis aureus). Heredity 92(6): 543-549

Lee B-Y, Penman, DJ and Kocher TD. 2003. Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis. Animal Genetics 34 (5): 379-383.

Li, L. and X. Guo. 2004. AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Marine Biotechnology 6:2636.

Liu, Z.J. 2005. Genetic Analysis-Amplified Fragment Length Polymorphism (AFLP), Chapter 19, In: Stock Identification Methods, Steve Cadrin, Keven D. Friedland, John Waldman, (eds.), Elsevier Press, New York, pp.389-411.

Liu, Z.J., Cordes, J. 2004. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238, 1-37.

Liu, Z.J., Cordes, J.F. 2004. Erratum to DNA marker technologies and their applications in aquaculture genetics. Aquaculture 242, 735-736.

Long, S., M. Wilson, E. Bengten, L. Bryan, L.W. Clem, N.W. Miller and V.G. Chinchar. 2004. Identification of a cDNA encoding channel catfish interferon. Dev. Comp. Immunol., 28: 97-111.

Long, S., M. Wilson, E. Bengtén, N. Hawke, L.W. Clem, N.W. Miller and V.G. Chinchar. Identification and characterization of FasL and cDNAs encoding the channel catfish death inducing signaling complex (DISC). Immunogenetics, 56: 518-530.

McKay, SJ, J Trautner, MJ Smith, BF Koop and RH Devlin. 2004 Evolution of duplicated growth hormone genes in autotetraploid salmonid fishes. Genome 47:714-723.

Milbury, C. A., P. M. Gaffney, D. W. Meritt, and R. I. E. Newell. 2004. Mitochondrial DNA markers allow monitoring of oyster stock enhancement in the Chesapeake Bay. Marine Biology 145:351-359.

Nonneman, D. and G.C. Waldbieser. 2004. Isolation and enrichment of abundant microsatellites from a channel catfish (Ictalurus punctatus) brain cDNA library. Animal Biotechnology, accepted for publication 2/10/04.

Ohta, Y., Landis, E., Boulay, T., Phillips, R.B., Collet, B., Secombes, C.J., Flajnik, M. F., and Hansen, J.D. 2004. Homologs of CD83 from elasmobranch and teleost fish. J. Immunology 173:4553-4560.

Peatman, E., Wei, X., Feng, J., Liu, L., Kucuktas, H., Li, L., He, C., Rouse, D., Wallace, R., Dunham, R., Liu, Z.J. 2004. Development of Expressed Sequence Tags (ESTs) from Eastern Oyster (Crassostrea virginica): Lessons Learned from Previous Efforts. Marine Biotechnology, in press.

Peterson, B.C., G.C. Waldbieser, and A.L. Bilodeau. 2004. IGF-I and IGF-II mRNA expression in slow and fast growing families of USDA103 channel catfish (Ictalurus punctatus). Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology 139:317-323.

Peterson, B.C., G.C. Waldbieser, and A.L. Bilodeau. 2005. Effects of recombinant bovine somatotropin on growth and abundance of mRNA for IGF-I and IGF-II in channel catfish (Ictalurus punctatus). Journal of Animal Science, accepted for publication 12/20/04).

Phillips, R. B. 2004. Chromosome Morphology. In Stock Identification Methods, edited by Kevin Friedland, John Waldman and Steve Cadrin. Academic Press.

Phillips, R. B. 2004. Adaptive evolution or genetic drift? Does genome complexity produce organismal complexity? (Invited commentary paper) Heredity 93:122-123.

Phillips, R. B., Noakes, M.A., Morasch, M., Felip, A. and G. H. Thorgaard. 2004. Does differential selection on the 5S rDNA explain why the rainbow trout sex chromosome heteromorphism is NOT linked to the SEX locus? Cytogenetics and Genome Research 105:122-125.

Pridgeon J.W., Liu, Z.J., and Liu, N. 2004. Identification of Mariner Elements from House Flies ( Musca domestica ) and German Cockroaches (Blattella germanica). Insect Molecular Biology 13, 443-447.

Quiniou, S.M.-A., M. Wilson, E. Bengtén, G.C. Waldbieser, L.W. Clem, and N.W. Miller. 2004. MHC RFLP analyses in channel catfish full-sibling families: Identification of the role of MHC molecules in spontaneous allogeneic cytotoxic responses. Developmental and Comparative Immunology, accepted for publication 8/18/2004.

Quiniou, S.M.A., M. Wilson, E. Bengtén, G.C. Waldbieser, L.W. Clem and N.W. Miller. 2004. MHC RFLP analyses in channel catfish full-sibling families: Identification of the role of MHC molecules in spontaneous allogeneic cytotoxic responses. Dev. Comp. Immunol. in press.

Reece, K. S., W. L. Ribeiro, P. M. Gaffney, R. B. Carnegie, and S. K. Allen, Jr. 2004. Microsatellite marker development and analysis in the eastern oyster (Crassostrea virginica): confirmation of null alleles and non-Mendelian segregation ratios. Journal of Heredity 95:346-352.

Rise, ML, SRM Jones, GD Brown, KR von Schalburg, WS Davidson, and BF Koop. 2004 Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection. Physiological Genomics (Sept 28 Epub ahead of print).

Rise, ML. K. von Schalburg, GD. Brown, RH. Devlin, MA. Mawer, N Kuipers, M Busby, M Beetz-Sargent, R Alberto, AR Gibbs, P Hunt, R Shukin, JA. Zeznik, C Nelson, SRM. Jones, D Smailus, S Jones, J Schein, M Marra, WS. Davidson, and BF. Koop. 2004. Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Research 14:478-49.

Robalino J, Browdy CL, Prior S, Metz A, Parnell P, Gross P, Warr G (2004) Induction of antiviral immunity by double-stranded RNA in a marine invertebrate. J Virol. 78:10442-8

Serapion, J., Kucuktas, H., Feng, J., Liu, Z.J. 2004. Bioinformatic Mining of Type I Microsatellites from Expressed Sequence Tags of Channel Catfish (Ictalurus punctatus). Marine Biotechnology 6, 364-377.

Serapion, J., Waldbieser, G.C., Wolters, W., Liu, Z.J. 2004. Development of Type I markers in channel catfish through intron sequencing. Animal Genetics 35, 463-466.

Shen, L., T.B. Stuge, E. Bengtén, M. Wilson, V.G. Chinchar, J.P. Naftel, J.M. Bernanke, L.W. Clem and N.W. Miller. 2004. Identification and characterization of clonal NK-like cells from channel catfish (Ictalurus punctatus). Dev. Comp. Immunol.,28: 139-152.

Tanguy, A., X. Guo and S.E. Ford. 2004. Discovery of genes expressed in response to Perkinsus marinus challenge in eastern (Crassostrea virginica) and Pacific (C. gigas) oysters. Gene, 338:121-131.

von Schalburg, KR, ML Rise, GD Brown, WS Davidson, BF Koop. 2004. A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary. Biology of Reproduction (Oct 20 Epub ahead of print)

Waldbieser, G.C., S.M.A. Quiniou, and A. Karsi. 2003. Rapid development of gene-tagged microsatellite markers from BAC clones using anchored TAA-repeat primers. Biotechniques 35: 976-979.

Wang, H. X. Guo, G. Zhang and F. Zhang. 2004. Classification of jinjiang oysters Crassostrea rivularis (Gould, 1861) from China, based on morphology and phylogenetic analysis. Aquaculture, 242:137-155.

Wang, Y. and X. Guo, 2004. Chromosomal rearrangement in Pectinidae revealed by rRNA loci and implications for bivalve evolution. Biol. Bull., 207:247-256.

Wang, Y., Z. Xu and X. Guo. 2004. Differences in the rDNA-bearing chromosome divide the Asian-Pacific and Atlantic species of Crassostrea (Bivalvia, Mollusca). Biological Bulletin., 206:46-54.

Wang, Y., Z. Xu and X. Guo. Characterization of eastern oyster (Crassostrea virginica Gmelin) chromosomes by fluorescence in situ hybridization with bacteriophage P1 clones. Marine Biotechnology, in press.

Zhang, Q, Allen, S.K., Jr., and Reece, K.S. Genetic variation in wild and hatchery stocks of the Suminoe oyster (Crassostrea ariakensis) assessed by PCR-RFLP and microsatellite markers. Marine Biotechnology, in press.

Cattle:
Nihsen, M.E., E.L. Piper, C.P. West, R.J. Crawford, Jr., T.M. Denard, Z.B. Johnson, C.A. Roberts, D.A. Spiers, and C.F. Rosenkrans, Jr. 2004. Growth rate and physiology of steers grazing tall fescue inoculated with novel endophytes. J. Anim. Sci. 82:878-883.

Schroeder, S.B., T.S. Edrington, M.L. Looper, C.L. Schultz, C.F.Rosenkrans, Jr., R. Flores, T.R. Callaway, R.C. Anderson, and D.J. Nisbet. 2004. Incidence of foodborne pathogens and antimicrobial susceptibility of fecal coliforms in stocker calves fed ionophore. Proc. Western Sec. Am. Soc. Anim. Sci. 55:353-356.

Turner, J. E., W. K. Coblentz, K. P. Coffey, R. T. Rhein, B. C. McGinley, N. W. Galdamez-Cabrerra, C. F. Rosenkrans, Jr., Z. B. Johnson, D. W. Kellogg, and J. V. Skinner, Jr. 2004. Effects of natural rainfall and spontaneous heating on voluntary intake, digestibility, in situ disappearance kinetics, passage kinetics, and ruminal fermentation characteristics of tall fescue hay. Anim. Feed Sci. Technol. 116:15-33

Ashwell, M. S., D. W. Heyen, T. S. Sonstergard, C. P. Van Tassell, Y. Da, P. M. Van Raden and H. A. Lewin. 2003. Detection of quantitative trait loci affecting female fertility and milk production in ten Dairy Bull DNA Repository families. J. Dairy Sci. 87:468-475.

Lewin, H. A. 2004. The future of cattle genomics: the beef is here. Cytogenetics and Genome Res. 102:10-15.

Cohen, M., M. Reichenstein, A. Everts-van der Wind, J. H. Lee, M. Shani, H. A. Lewin, J. I. Weller, M. Ron and E. Seroussi. 2004. Cloning and characterization of FAM13A1: evidence for population-wide linkage disequilibrium with a milk protein QTL on BTA6 in Israeli Holsteins. Genomics 84:374-383.

Everts-van der Wind, A., S. R. Kata, M. R., Band, M.Rebeiz, D. M., Larkin, R. E. Everts, C. A. Green, L. Liu, S. Natarajan, T. Goldhammer, J. H. Lee, S. Mckay, J. E. Womack and H. A. Lewin. 2004. A 1,463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates. Genome Research 14:1424-1437.

Kumar, C. G., R. LeDuc, G. Gong, L. Roinishivili, H. A. Lewin and L. Liu. ESTIMA, a tool for EST management in a multi-project environment. 2004. BMC Bioinformatics 5:176-185.

Hu, Z.-L., K. Glenn, A.M. Ramos, C.J. Otieno, J.M. Reecy, and M.F. Rothschild. 2005. Expeditor: A pipeline for designing primers Using Human Gene Structure and Livestock Animal EST Information. Journal of Heredity 96:1-3.

Soller, M. and J.M. Reecy. 2004. QTL mapping and cloning in beef cattle. AgBioTechNet Proceedings 004 paper 3:1-8.

Max F. Rothschild, Susan J. Lamont, James M. Reecy. Current Status of Animal Genomics. Proceedings Annual AAAS meeting, Washingon DC Feb 17-19, 2005

Agca, C., C.A. Bidwell, and S.S. Donkin. 2004. Cloning of bovine pyruvate carboxylase and 5' untranslated region variants. Animal Biotechnology 15:47-66.
Rodriguez, S.M., C.A. Bidwell, and S.S. Donkin. 2004. Cloning the genomic sequence and proximal promoter of bovine pyruvate carboxylase. Journal of Animal Sciences 82(1):365.
Farber, C.R. and J.F. Medrano 2004. Identification of putative homology between horse microsatellite flanking sequences and cross-species ESTs, mRNAs and genomic sequences. Animal Genetics 35:28-33.

Warden, C.H., S. Stone, S. Chiu, A.L. Diament, D. Shattuck, R.Riley, P.Corva, J.Easlick, J.S. Fisler and J.F. Medrano 2004. Identification of a congenic mouse line with obesity and body length phenotypes. Mammalian Genome 15:460-71.

Corva, P.M., N.C. Mucci, K. Evans and J.F. Medrano 2004. Diet effects on reproduction in high growth (hg/hg) female mice that are deficient in the Socs-2 gene. Reproduction, Nutrition, Development 44:303-312.

J.F. Medrano, The Complex Trait Consortium 2004. The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nature Genetics 36:11331137.

Arias, J. and B.W. Kirkpatrick. 2004. Mapping of bovine ovulation rate QTL; an analytical approach for three-generation pedigrees. Animal Genetics 35:7-13.

Cruickshank, J., M.R. Dentine, P.J. Berger and B.W. Kirkpatrick. 2004. Evidence for quantitative trait loci affecting twinning rate in North American Holstein cattle. Animal Genetics 35:206-212.
Gonda, M.G., J.A. Arias, G.E. Shook, K.E. Gregory and B.W. Kirkpatrick. 2004. Identification of an ovulation rate QTL in cattle on BTA14 using selective DNA pooling and interval mapping. Animal Genetics 35:298-304.

Bidwell, C. A., L. N. Kramer, A. C. Perkins, T. S. Hadfield, D. E. Moody and N. E. Cockett 2004. Expression of PEG11 and PEG11AS transcripts in normal and callipyge sheep. BMC Biology 2:17. DOI:10.1186/1741-7007-2-17.

Cockett, N. E. 2004. Summary of the 2004 International Conferences for Animal Genetics, held in Tokyo, Japan. Japanese Journal of Animal Breeding (in press).

Cockett, N. E., M. Smit, C. A. Bidwell, K. Sergers, T. L. Hadfield, G. D. Snowder, M. Georges and C. Charlier. 2004. The callipyge mutation and other genes that affect muscle hypertrophy in sheep. Genetics Selection Evolution 37(Suppl. 1):S65-S81.

Bidwell, C.A., L.N. Kramer, T.S. Hadfield, D.E. Moody, C. Charlier, M. Georges, and N.E. Cockett. 2004. Expression of PEG11 and AntiPEG11 transcripts in normal and callipyge sheep. Keystone Symposia: Emerging Mechanisms of Epigenetic Regulation. Tahoe City, CA. January, 2004.
Perkins, A.C., L. N. Kramer, D.E. Moody, T.S. Hadfield, S. Eng, N.E. Cockett and C.A. Bidwell. 2004. Developmental expression of paternally expressed genes from the callipyge locus of sheep chromosome 18. 29th International Conference on Animal Genetics, Tokyo, Japan September 2004.
Davis, E., C. H. Jensen, H. D. Schroder, T. Hadfield, A. Kiem, N. Cockett, M. Georges and C. Charlier (2004) Ectopic expression of DLK1 protein in skeletal muscle of padumnal heterozygotes causes the callipyge phenotype. Current Biology 14:1858-1862.

Notter, D. R. and N. E. Cockett (2004) Opportunities for detection and use of QTL influencing seasonal reproduction. Genetics Selection Evolution (in press).

Cockett, N. E. And F. Galibert (2004) Genome Mapping at the Molecular Level. In: Mammalian Genomics. Editor: A. Ruvinsky. CAB International, UK (in press).

De Donato, M., Brenneman, R.A., Stelly, D.M., Womack, J.E. and Taylor, J.F. 2004. A methodological approach for the construction of a radiation hybrid map of bovine chromosome 5. Genetics and Molecular Biology 27:22-32, 2004.

Dindot, S., Kent, K.C., Evers, B., Loskutoff, N., Womack, J. and Piedrahita, J.A. 2004. Conservation of genomic imprinting at the XIST, IGF2, and GTL2 loci in the bovine. Mammalian Genome. 15:966-974, 2004.

Everts-van der Wind, A., Kata, S.R., Band, M.R., Rebeiz, M., Larkin, D.M., Everts, R., Green, C.A., Liu, L., Natarajan, S., Goldammer, T., Lee, J.H., McKay, S., Womack, J.E. and Lewin, H.A. 2004 A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates. Genome Res, 14:1424-1437, 2004.

Goldammer, T., Kata, S.R., Brunner, R.M., Kühn, C., Weikard, R., Womack, J.E. and Schwerin, M. 2004. High-resolution comparative mapping between human chromosomes 4 and 8 and bovine chromosome 27 provides genes and segments serving as positional candidates for udder health in cattle. Genomics 84:696-706, 2004.

Johnston, J.S. and Elsik, C.G. 2004. Strepsipteran gene ontology. Tijdschrift voor Entomologie. Accepted.

Ramlachan, N., Womack, J.E. and Skow, L.C. 2004. Analyses of bovine major histocompatibility (BoLA) class I loci reveal a novel frameshift mutation in a BoLA-A allele prevalent in wild and feral bovids. Immunology 51-62, 2004.

Seabury, C., Womack, J., Piedrahita, J.A., and Derr, J. 2004. Comparative PRNP genotyping of U. S. cattle sires for potential association with BSE. Mammalian Genome 15:828-833, 2004.

Horse:
Annandale E, Valberg SJ, Mickelson JR and Seaquist, E. (2004). Insulin sensitivity and skeletal muscle glucose transport in equine polysaccharide storage myopathy. Neuromuscular Disorders 14: 666-674.

Brenig B, Beck J, Hall AJ, Broad TE, Chowdhary BP, Piumi F. (2004). Assignment of the equine solute carrier 26A2 gene (SLC26A2) to equine chromosome 14q15-->q21. Cytogenet Genome Res. 107:139.

Farber CR, Medrano JF. (2004). Identification of putative homology between horse microsatellite flanking sequences and cross-species ESTs, mRNAs and genomic sequences. Anim Genet. 35: 28-33.

Flaminio, M. J. B. F., Yen, A., and Antczak, D. F. (2004) The proliferation inhibitory proteins p27Kip1 and retinoblastoma are involved in the control of equine lymphocyte proliferation. Vet. Immunol. Immunopathol. 102: 363-377.

Lee, E-J, Raudsepp T., Kata S.R., Adelson D., Womack J.E., Skow L.C., Chowdhary B.P. (2004). A 1.4 Mb interval RH map of horse chromosome 17 provides detailed comparison with human and mouse homologues. Genomics 83:203-215.

Lindgren, G., Backström, N., Swinburne, J., Hellborg, L., Einarsson, A., Sandberg, K., Cothran, G., Vilà, C., Binns, M. and Ellegren, H. (2004). Limited number of patrilines in horse domestication. Nature Genetics 36: 335-336.

Mickelson JR, Wagner ML, Goh G, Wu JT, Morrison LY, Alexander LJ, Raudsepp T, Skow LC, Chowdhary BP, Swinburne JE, and Binns MM. (2004). Thirty-seven new equine microsatellite loci assigned to the genetic linkage and radiation hybrid maps. Animal Genetics 35, 481-484.

Raudsepp T, Lee E-J, Kata SR, Brinkmeyer C, Mickelson JR, Skow LC, Womack JE, and Chowdhary BP. (2004). Exceptional conservation of horse-human gene order on X chromosome revealed by high-resolution radiation hybrid mapping. Proc Natl Acad Sci USA 101, 2386-2391.

Raudsepp T., Santani A., Wallner A., Kata S.R., Ren C., Zhang H., Womack J.E., Skow L.C. and Chowdhary B.P. (2004). A detailed map of the horse Y chromosome. PNAS (USA) 101: 9321-9326.

Takahashi, T., Yawata, M., Raudsepp, T., Lear, T. L., Chowdhary, B. P., Antczak, D. F., and Kasahara, M. (2004) Natural killer cell receptors in the horse: evidence for the existence of multiple transcribed LY49 genes. European J. of Immunology 34: 773-784.

Terry RB, Archer S, Brooks S, Bernoco D, Bailey E. (2004). Assignment of the appaloosa coat colour gene (LP) to equine chromosome 1. Anim Genet. 35:134-137.

Tozaki T, Penedo MC, Oliveira RP, Katz JP, Millon LV, Ward T, Pettigrew DC, Brault LS, Tomita M, Kurosawa M, Hasegawa T, Hirota K. (2004). Isolation, characterization and chromosome assignment of 341 newly isolated equine TKY microsatellite markers. Anim Genet. 35:487-496.

Wagner B, Miller DC, Lear TL, Antczak DF. (2004). The complete map of the Ig heavy chain constant gene region reveals evidence for seven IgG isotypes and for IgD in the horse. J Immunol. 2004 Sep 1;173(5):3230-42.

Wagner ML, Goh G, Wu JT, Raudsepp T, Morrison LY, Alexander LJ, Skow LS, Chowdhary BP, Mickelson JR. (2004) Radiation hybrid mapping of 75 previously unreported equine microsatellite loci. Anim Genet. 35:68-71.

Wagner ML, Goh G, Wu JT, Raudsepp T, Morrison LY, Alexander LJ, Skow LC, Chowdhary BP, Mickelson JR. (2004) Radiation hybrid mapping of 63 previously unreported equine microsatellite loci. Anim Genet. 35:159-162.

Wagner ML, Goh G, Wu JT, Morrison LY, Alexander LJ, Raudsepp T, Skow LC, Chowdhary BP, and Mickelson JR. (2004). Sixty-seven new equine microsatellite loci assigned to the radiation hybrid map. Animal Genetics 35, 484-46.

Ward TL, Valberg SJ, Adelson DL, Abby CA, Binns MM, and Mickelson JR (2004). Glycogen Branching Enzyme (GBE1) Mutation Causing Equine Glycogen Storage Disease IV. Mammalian Genome 15, 570-577.


Poultry:


Sheep:
Refereed manuscripts published or accepted: 12
Agca, C., C.A. Bidwell, and S.S. Donkin (2004) Cloning of bovine pyruvate carboxylase and 5' untranslated region variants. Animal Biotechnology15:47-66.
Bidwell, C. A., L. N. Kramer, A. C. Perkins, T. S. Hadfield, D. E. Moody and N. E. Cockett (2004) Expression of PEG11 and PEG11AS transcripts in normal and callipyge sheep. BMC Biology 2:17. DOI:10.1186/1741-7007-2-17.

Cockett, N. E. (2004) Summary of the 2004 International Conferences for Animal Genetics, held in Tokyo, Japan. Japanese Journal of Animal Breeding (in press).

Cockett, N. E., M. Smit, C. A. Bidwell, K. Sergers, T. L. Hadfield, G. D. Snowder, M. Georges and C. Charlier (2004) The callipyge mutation and other genes that affect muscle hypertrophy in sheep. Genetics Selection Evolution 37(Suppl. 1):S65-S81.

The Complex Trait Consortium (2004) The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nature Genetics 36:1133-1137.

Corva, P. M., N. C. Mucci, K. Evans and J. F. Medrano (2004) Diet effects on reproduction in high growth (hg/hg) female mice that are deficient in the Socs-2 gene. Reproduction, Nutrition, Development 44:303-312.

Cousens, C., Bishop, J.V., Philbey, A.W., Carlson, J.O., Gill, C.A. DeMartini, J.C., and Sharp, J.M. (2004) Analysis of integration sites of Jaagsiekte sheep retrovirus in ovine pulmonary adenocarcinoma. Journal of Virology 78 (16): 8506-8512.

Davis, E., C. H. Jensen, H. D. Schroder, T. Hadfield, A. Kiem, N. Cockett, M. Georges and C. Charlier (2004) Ectopic expression of DLK1 protein in skeletal muscle of padumnal heterozygotes causes the callipyge phenotype. Current Biology 14:1858-1862.

Farber, C.R. and J.F. Medrano (2004) Identification of putative homology between horse microsatellite flanking sequences and cross-species ESTs, mRNAs and genomic sequences. Animal Genetics 35:28-33.

Notter, D. R. and N. E. Cockett (2004) Opportunities for detection and use of QTL influencing seasonal reproduction. Genetics Selection Evolution (in press).

Rodriguez, S. M., C. A. Bidwell and S. S. Donkin (2004) Cloning the genomic sequence and proximal promoter of bovine pyruvate carboxylase. Journal of Animal Sciences 82:365.

Warden, C. H., S. Stone, S. Chiu, A. L. Diament, D. Shattuck, R. Riley, P. Corva, J. Easlick, J. S. Fisler and J. F. Medrano (2004) Identification of a congenic mouse line with obesity and body length phenotypes. Mammalian Genome 15:460-71.

Book chapters: 2
Cockett, N. E. And F. Galibert (2004) Genome Mapping at the Molecular Level. In: Mammalian Genomics. Editor: A. Ruvinsky. CAB International, UK (in press).

Brenig, B., T. E. Broad, N. E. Cockett and A. Eggen (2004) Achievements of Research in the Field of Molecular Genetics. In: The World Association for Animal Production, Book of the Year for 2003. Wageningen Academic Publishers, The Netherlands (in press).

Published abstracts and proceedings: 6
Bidwell, C.A., L.N. Kramer, T.S. Hadfield, D.E. Moody C. Charlier, M. Georges and N.E. Cockett (2004) Expression of PEG11 and AntiPEG11 transcripts in normal and callipyge sheep. Keystone Symposia: Emerging Mechanisms of Epigenetic Regulation. Tahoe City CA.

Cockett, N. E. (2004) Advances in Livestock Genomics. Conference on Agricultural Genomics: Who, What and Why. AAAS, Pacific Division.

Eng, S. L., E. Owens, J. E. Womack and N. E. Cockett (2004) Development of an ovine-whole genome radiation hybrid panel. Proc., Plant and Animal Genome XII, poster P650, p. 233.

Liu, W-S., C. W. Beattie, N. E. Cockett and F. A. Ponce de Leon (2004) Comparative analysis of 38 bovine Y-chromosome microsatellites in cattle, sheep and goats. Proc., Plant and Animal Genome XII, poster P632, p. 229.

Perkins, A. C., L. N. Kramer, D. E. Moody, T. S. Hadfiled, S. Eng, N. E. Cockett and C. A. Bidwell (2004) Developmental expression of paternally expressed genes from the callipyge locus of sheep chromosome 18. Proc., 29th International Conference on Animal Genetics, p. 73.

Smit, M., F. Baraldi, E. Davis, X. Tordoir, T. Hadfield, G. Gyapay, N. Cockett, M. Georges and C. Charlier (2004) Extending the boundaries of the callipyge imprinted gene cluster on ovine chromosome 18. Proc., Plant and Animal Genome XII, poster P649, p. 233.

Takeda, H., X. Tordoir, M. Smit, N. Cockett, M. Georges and C. Charlier (2004) Dnase I hypersensitive sites around the ovine callipyge mutation. Proc., 29th International Conference on Animal Genetics, p. 73.

Dissertations: 1
Maria Smit. PhD in Animal Science with Molecular Genetics specialization, Utah State University. Dissertation Title: Long Range Transcriptional Regulation at the Ovine Callipyge Imprinted Gene Cluster.

Swine:
http://www.genome.iastate.edu/community/NRSP8/2004/index.html

Bertani G, Gladney C, Johnson RK, Pomp D 2004. Evaluation of gene expression in pigs selected for enhanced reproduction. II: Anterior Pituitary. J Anim Sci 82:32-40.

Blowe, C. D., E. J. Eisen, O. W. Robison, and J. P. Cassady. 2004. Characterization of a line of pigs selected for increased litter size for two RFLPs identified in follistatin. Abstract. J. Anim. Sci Supplement 1.

Caetano AC, JB Edeal, K Burns, RK Johnson, C Tuggle, D Pomp 2005. Physical mapping of the differentially expressed porcine ovarian transcriptome. Animal Genetics (Accepted).

Caetano A, J Ford, RK Johnson, D Pomp 2004. Microarray profiling for differential gene expression in ovaries and ovarian follicles of pigs selected for increased ovulation rate. Genetics 168: 1529-37.

Cao H, Robinson JA, Jiang Z, Melville JS, Golovan SP, Jones MW and Verrinder Gibbins AM. 2004. A high-resolution radiation hybrid map of porcine chromosome 6. Anim. Genet. 35:367-378.

Churchill GA and 101 others including D Pomp 2004. The Collaborative Cross: A community resource for the genetic analysis of complex traits. Nature Genetics 36:1133-1137.

Ciobanu, D.C., J.W.M. Bastiaansen, S.M. Lonergan, H. Thomsen, J.C.M. Dekkers, G.S. Plastow and M.F. Rothschild. 2004. New alleles in calpastatin gene are associated with meat quality traits in pigs. J. Animal Sci. 82:2829-2839.

Ciobanu, D.C., Lonergan, S.M., Bastiaansen, J.W.M., Mileham A, Miculinich, Schultz-Kaster, C., Sosnicki, A.A., Plastow , G.S. and M.F. Rothschild. 2004. Association of new Calpastatin alleles with meat quality traits in commercial pigs. 50th Int. Congress of Meat Science and Technology, Helsinki, Finland.

Dawson HD, Royaee AR, Nishi S, Kuhar D, Schnitzlein WM, Zuckermann F, Urban JF, Lunney JK. 2004. Identification of Key Immune Mediators Regulating T helper 1 Responses in Swine. Vet. Immunol. Immunopathol. 100: 105-111.

Dawson HD, Beshah E, Nishii S, Solano-Aguilar G, Morimoto M, Zhao A, Madden KB, Ledbetter TK, Dubey JP, Shea-Donohue T, Lunney JK, Urban, JF Jr. 2005. Localized multi-gene expression patterns support an evolving Th1/Th2-like paradigm in response to infections with Toxoplasma gondii and Ascaris suum in pigs. Infection and Immunity. 73: 1116-1128.

Dvorak, C.M.T., K.A. Hyland, J.G. Machado, Y. Zhang, S.C. Fahrenkrug, and M.P. Murtaugh. 2004. Gene discovery and expression profiling in porcine Peyers patch. Vet. Immunol. Immunopathol. In press.

Ernst, C.W., N.E. Raney, V.D. Rilington, G.A. Rohrer, J.A. Brouillette and P.J. Venta. 2004. Mapping of the FES and FURIN genes to porcine chromosome 7. Anim. Genet. 35:142-143.

Farber, C.R., N.E. Raney, V.D. Rilington, P.J. Venta and C.W. Ernst. 2003. Comparative mapping of genes flanking the human chromosome 12 evolutionary breakpoint in the pig. Cytogenet. Genome Res. 102:139-144.

Flickinger, G.H., C.M.T. Dvorak, J.A. Hendrickson, M.P.Murtaugh, and M.S. Rutherford, 2004. Radiation hybrid mapping of porcine ESTs from porcine Peyers Patch. Plant and Animal Genome XII, San Diego, CA, January 11-14.

Gaboreanu, A.M., L. Grapes, A. M. Ramos, J.-J. Kim and M. F. Rothschild. 2004. Characterization of an X-chromosome PCR-RFLP marker associated with fat deposition and growth in the pig. Animal Genetics 35: 401-403.

Galina-Pantoja L, Solano-Aguilar GI, Mellencamp MA, Bastiaansen J, Lunney JK. 2004. Relationship between immune cells and pig growth on a commercial farm. Proc. 18th IPVS Congress, Hamburg, Germany, 2004, Vol. I. p.381.

Gladney C, G Bertani, MK Nielsen, D Pomp 2004. Evaluation of gene expression in pigs selected for enhanced reproduction. I: Ovarian Follicles. J Anim Sci 82:17-31.

Grapes, L., J.C.M. Dekkers, M.F. Rothschild, and R.L. Fernando. 2004. Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci. Genetics 166: 1561-1570.

Grapes, L., M. Z. Firat, J. C. M. Dekkers, M. F. Rothschild, R. L. Fernando. 2004. Optimal haplotype structure for linkage disequilibrium-based fine mapping of quantitative trait loci. American Association of Animal Science Midwest Region, Mar 15-17, Des Moines, IA

Grapes, L., S. Rudd, R. L. Fernando, M. F. Rothschild. 2004. In silico SNP identification from porcine EST sequences and comparative analysis with human SNP density. Plant and Animal Genome XII, Jan 10-14, San Diego, CA

Grindflek, E, N Hoen, H Sundvold, MF Rothschild, G Plastow and S Lien. 2004. Investigation of a Peroxisome Proliferator Activated Receptor gamma (PPARG) haplotype effect on meat quality and carcass traits in pigs. Anim. Genet 35:238-241.

Holl JW, JP Cassady, D Pomp, RK Johnson 2004. A genome scan for QTL and imprinted regions affecting reproduction in pigs. J Anim Sci 82:3421-3429.

Hu, Z-L, K. Glenn, A. M. Ramos, C. J. Otieno, and M. F. Rothschild. 2004. Expeditor: A Pipeline for Designing Pig Primers Using Human Gene Structure and Pig EST Information. Plant and Animal Genome XII, Jan 10-14, San Diego, CA

Hu Z, Dracheva S , Jang W , Maglott D , Bastiaansen H , Reecy JM , Rothschild MF. 2005. PigQTLDB - A Pig QTL Database. Plant and Animal Genome XIII, Jan 15-19, San Diego, CA (Abstract) P839.

Jiang Z, Wu X-L, Garcia MD, Griffin KB, Michal JJ, Ott TL, Charley T. Gaskins CT, Raymond W. Wright Jr. 2004. Comparative Gene-based In Silico Transcriptome Analysis of Different Tissues/Organs in Cattle. Genome 47:1164-1172.

Kim, J.-J. and J. C. M. Dekkers. 2004. A combined line-cross and halfsib model to detect and characterize QTL in an F2 outbred cross population. American Society of Animal Science Annual meeting (Abstract). http://www.fass.org/2004/abstracts/414.PDF

Kim, K.S., J. J. Kim, J. C. M. Dekkers, and M. F. Rothschild. 2004. Polar overdominant inheritance of a DLK1 polymorphism is associated with growth and fatness in pigs. Mammalian Genome 15:552-559.

Kim, K.S., J.J. Kim, J.C.M. Dekkers, and M.F. Rothschild. 2004. Polar overdominance imprinting is associated with growth and fat deposition in pigs. PAG XII p240

Kim, K.S., J.M. Reecy, W.H. Hsu, L.L. Anderson. 2004. Functional and phylogenetic analyses of a melanocortin-4 receptor mutation in domestic pigs. Domestic Animal Endocrinology 26: 75-86.

Klee EW, Carlson DF, Fahrenkrug SC, Ekker SC, Ellis LB. 2004. Identifying secretomes in people, pufferfish and pigs. Nucleic Acids Res. 32:1414-21.

Kunej T, Wu X-L, Milosevic Berlic T, Michal JJ, Jiang Z, Dovc P. 2005. Frequency distribution of a Cys430Ser polymorphism in peroxisome proliferator-activated receptor-gamma coactivator-1 (PPARGC1) gene between Chinese and Western pig breeds. J. Anim. Breed. Genet. (in press).

Liu G, Geurts AM, Yae K, Srinivasan AR, Fahrenkrug SC, Largaespada DA, Takeda J, Horie K, Olson WK, Hackett PB. 2005. Target-site Preferences of Sleeping Beauty Transposons. J Mol Biol. 346:161-73.

Lunney, J.K. 2003. Are there immune gene alleles that determine whether a pig will be healthy? Genetics of Pig Health Symposium, Des Moines, IA. M. Boggess, Ed.; National Pork Board Press, DesMoines, IA. p.63-72.

Martínez, M.M., G.M. Hill, J.E. Link, N.E. Raney, R.J. Tempelman and C.W. Ernst. 2004. Impact of pharmacological zinc and phytase on liver metallothionein concentration and mRNA abundance in the young pig. J. Nutr. 134:538-544.

Moller M, Berg F, Riquet J, Pomp D, Archibald A, Anderson S, Feve K, Zhang Y, Rothschild MF, Milan D, Andersson L, Tuggle C 2004. High-resolution comparative mapping across pig chromocome 4 (SSC4), emphasizing the FAT1 region. Mammalian Genome 15:771-31.

Mote, B. E., J. D. Loy, M. F. Rothschild. 2004. Identification of SNPs in the insulin-like growth factor gene family and subsequent mapping of IGF2R and IGFBP1 in pigs. Plant and Animal Genome XII, Jan 10-14, San Diego, CA

Nadershahi A, Fahrenkrug SC, Ellis LB. 2004. Comparison of computational methods for identifying translation initiation sites in EST data. BMC Bioinformatics. 5:14.

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Rothschild, M.F. 2004. DNA advances offer big payoffs. Pig Progress Magazine. 20:1-3.

Rothschild, M.F. J. P. Bidanel and D.C. Ciobanu. 2004. Genome Analysis of QTL for Muscle Tissue Development and Meat Quality. In: Muscle Development of Livestock Animals. Physiology, Genetics and Muscle Quality. Eds: M.F. W. te Pas, H.P. Haagsman and M.E. Everts. CABI Publishing pgs 247-266.

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Royaee AR, Husmann R, Dawson HD, Calzada-Nova G, Schnitzlein WM, Zuckermann F, Lunney JK. 2004. Deciphering the involvement of innate immune factors in the development of the host responses to PRRSV vaccination. Vet. Immunol. Immunopathol. 102: 199-216.

Smith DM, Martens GW, Lunney JK, Ando A, Lee J-H, Ho C-S, Schook L, Renard C, Chardon P. 2005. Nomenclature for Factors of the SLA Class I System, 2004. Tissue Antigens. 65: 136-149.

Stalder, K. J., M. Knauer, T. J. Baas, M. F. Rothschild, and J. W. Mabry. 2004. Sow Longevity. Pig News and Information. 25:53N-74N.

Thomsen, H., J. C. M. Dekkers, H. K. Lee, and M. F. Rothschild. 2004. Characterization of quantitative trait loci for growth and meat quality in a cross between commercial breeds of swine J. Anim. Sci. 82:2213-2228.

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Tuggle, C.K., X.W. Shi, L. Marklund, A. Stumbaugh, T.J. Stabel, M.A Mellencamp, L. Galina-Pantoja, and J. Bastiaansen 2004. Association of bacterial infection traits with genetic variation at candidate genes for porcine disease resistance. Bulletin AS 650, Animal Industry Report 2004, Iowa State University, Ames, IA ASL-R1952.

Tuggle, C.K., Y. Zhang, M.F. Rothschild, M.Moller, F. Berg, L. Anderson, J. Riquet, D. Milan, D. Pomp, A. Archibald, S. Anderson. 2004. A detailed gene map of pig chromosome 4, where the first quantitative trait locus in livestock was mapped. Bulletin AS 650, Animal Industry Report 2004, Iowa State University, Ames, IA ASL-R1951.

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Wu X-L, Griffin KB, Garcia MD, Michal JJ, Xiao Q-J, Wright Jr. RW, Jiang Z. 2004. Census of orthologous genes and self-organizing maps (SOM) of biologically relevant transcriptional patterns in chickens (Gallus gallus). Gene 240:213-225.

Zhang, X., N. Reilly, and M.S. Rutherford, 2005. An RNA interfering system for primary porcine alveolar macrophages. Anim. Biotechnol, in press.

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Zhao, S.-H. A. Erickson, and C.K. Tuggle. 2004. Physical and Linkage mapping of lymphocyte antigen 86 (Ly86) gene to porcine chromosome 7. Anim. Genet. 35:164.

Zhao, S.-H. and C.K. Tuggle. 2004. Linkage mapping and expression analyses during early gestation in the pig of a novel gene, PLacentally Expressed Transcript 1 (PLET1). Anim. Genet. 35:72-74.

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05/27/2008