12/03/2003

ARIZONA





Henderson, D.A. 2003. A Bayesian Statistical Method for the Detection of Differential Gene Expression and Control of Multiple Hypothesis Testing With Gene Expression Microarray Data. International Symposium on Animal Functional Genomics, Michigan State University, East Lansing, MI.





Henderson, D.A., A. de la Fuente, P. Mendes, and I. Hoeschele. 2003. Factor analysis for the identification of metabolic pathways from microarray expression data. J. Comp. Biol., submitted.





Henderson, D.A., and I. Hoeschele. 2003. Bayesian Exploratory Factor Analysis with an Application to the Identification of Metabolic Pathways from Microarray Expression Data. Biostatistics, submitted.





Henderson, D.A. 2003. A Bayesian Statistical Method for the Detection of Differential Gene Expression and Control of Multiple Hypothesis Testing With Gene Expression Microarray Data. Bioinformatics, submitted.





Stiening, C.M., A.M. Hoying, D.A. Henderson, J.B. Hoying, P.C. Gentry, Y. Kobayashi, and R.J. Collier. 2003. Characterization of a 4,600-cDNA Bovine Microarray. J. Anim. Sci. 86:W22 Suppl. 1.





CALIFORNIA





Rincon, G. and J.F. Medrano. 2003. Single nucleotide polymorphism (SNP) genotyping of bovine milk protein genes using the tetra primer ARMS-PCR. Animal Breeding and Genetics 120:1-9.





Ward, W. 2003. Mammary Growth and Development in the High Growth (hg/hg) Mouse. M.S. Thesis.





Website for NC1010: http://animalscience.ucdavis.edu/LivestockBiotechnology/





ILLINOIS





Band, M. R., R. E. Everts, Z. L. Liu, D. E. Morin, J. U. Peled, S. L Rodriguez-Zas, and H. L. Lewin. 2003. Gene expression profiling of 17 cattle tissues reveals unique patterns related to tissue function. Plant, Animal and Microbe Genomes XI Conference. Jan. 11-15, 2003. Microarrays section. http://www.intl-pag.org/11/abstracts/P7a_P745_XI.html Unpublished presentation.





Loor, J. J., J. K. Drackley, H. M. Dann, R. E. Everts, S. L. Rodriguez-Zas, and H. A. Lewin. 2003. Mammary gene expression analysis in peripartal dairy cows using a bovine cDNA microarray. Journal Animal Science, 81(Suppl. 1): W8.





Loor, J. J., J. K. Drackley, H. M. Dann, R. E. Everts, S. L. Rodriguez-Zas, and H. A. Lewin. 2003. Hepatic gene expression analysis in peripartal dairy cows using a bovine cDNA microarray. Journal Animal Science, 81(Suppl. 1): W9.





Rodriguez-Zas, S. L., M. R. Band, R. E. Everts, B. R. Southey, Z. L. Liu, and H. A. Lewin. 2003. Analysis of gene expression patterns in the cattle digestive system. Journal Animal Science, 81(Suppl. 1): 628.





IOWA





Reecy, J.M., and Nettleton, D. (2002) Statistical Analysis of Gene Expression Data from Hypertrophying and Normal Muscle Tissue. International Society of Animal Genetics. Goettigen, Germany.



Reecy, J.M., Potts, J., and Smith, T.P.L. (2002) Beyond myostatin; the search for interacting alleles. PAG X proceedings W61.





Carson, J.A., D. Nettleton, and J.M. Reecy. 2001. Differential gene expression in the rat soleus muscle during early work overload-induced hypertrophy. The FASEB Journal Express Article 10.1096/fj.01-0544fje Published online December 14, 2001.





Stricker, C., M. Schelling, F. Du, I. Hoeschelle, S. A. Fernandez and R. L. Fernando. 2002. A comparison of efficient genotype samplers for complex pedigrees and multiple linked loci. 7th World Congress Genet. Appl. Livest. Prod. CD-ROM Communication N o 21-12.





Fernando, R. L., J. C. M. Dekkers and M. Soller. 2002. Controlling the proportion of false positives (PFP) in a multiple test genome scan for marker QTL linkage. 7th World Congress Genet. Appl. Livest. Prod. CD-ROM Communication N o 20-01.





KENTUCKY





Fan, M. Z., J. C. Matthews, D. G. Burrin, and D. Lackeyram. 2003. EAAC1 is the Major High-Affinity L-Glutamate Transporter and Expression is Upregulated During Differentiation of Neonatal Porcine Enterocytes. FASEB Journal 17(5):A305.





Gissendanner, S. J., N. M. P. Etienne, and J. C. Matthews. 2003. Differential Expression of EAAC1 and GLT-1 Glutamate Transporters by Bovine Epithelial Tissues is not Altered by Physiological Development. FASEB Journal 17(5):A305.





Gissendanner, S. J., N. M. P. Etienne, K. R. McLeod, and J. C. Matthews. 2003. The Pattern of EAAC1 and GLT-1 Glutamate Transporter Expression by Skeletal Muscle and Adipose Tissues of Fattening Cattle Differs from that of Glutamine Synthetase. FASEB Journal 17(5):A738.





Gissendanner, S. J., N. M. P. Etienne, K. R. McLeod, and J. C. Matthews. 2003. The Patterns of EAAC1 and GLT-1 Glutamate Transporters and Glutamine Synthetase Expression by Skeletal Muscle and Adipose Tissues Change as Cattle Grow and Fatten. Oral presentation, March 2003, MANRRS 18th Annual National Career Fair and Training Conference, Atlanta, GA.





Howell, J. A., A. D. Matthews, T. C. Welbourne, and J. C. Matthews. 2003. Content of Ileal EAAC1 and Hepatic GLT-1 High-Affinity Glutamate Transporters is Increased in Growing Versus Non-Growing Lambs, Paralleling Increased Tissue Concentrations of D- and L-Glutamate and Plasma Glutamine and Alanine. Journal of Animal Science 81:1030-1039.





Krehbeil, C. R. and J. C. Matthews. Absorption of Amino Acids and Peptides. 2003. In: J. P. F. DMello (Ed.) Amino Acids in Animal Nutrition, 2nd edition. Chapter 3, pp. 41-70. CAB International, Wallingford.





Novak, D. A. and J. C. Matthews. 2003. Glutamate transport by Rcho-1 cells derived from rat placenta. Pediatric Research 53(5):1-5.





MICHIGAN





Aho, A.D., A.M. McNulty, and P. M. Coussens. 2003. Enhanced expression of IL-1a and TRAF1 in ileal tissues of cattle infected with Mycobacterium paratuberculosis.

Infection and Immunity, 71(11), 6479-6486.





Burton, J., P. Coussens, M. VandeHaar, M. Allen, G. Smith, and J. Ireland. 2004. Functional Genomics and the Dairy Cow: From Genes to the Farm. Michigan Dairy Review. (paper copy in press for Jan 2004 issue; also see http://www.msu.edu/user/mdr/).



Burton, J.L., and R.J. Erskine. 2003. Mastitis and immunity: some new ideas for an old disease. Veterinary Clinics of North America: Food Animal Practice 19:1-45.





Rosa, G.J.M., R.J. Tempelman, S. Suchyta, S.A. Madsen, J.L. Burton, and P.M. Coussens, 2003. Normalization, replication, and significance tests in cDNA microarray experimentation. J. Dairy Sci. 86 (Suppl. 1):159 (abstr. 630).





Burton, J.L. 2003. Functional Genomics of the Stress-Immune Axis. International Agriculture Biotechnology Short Course. Michigan State University. May, July, and August, 2003.





Burton, J.L. 2003. Animal model: Neutrophil adhesion molecules and apoptosis in inflammation and parturition. Biomarkers of Pre-term Delivery Workshop, Michigan State University. March 21, 2003.





Chang, L-C., S.A. Madsen, P.S.D. Weber, T. Toelboell, and J.L. Burton. 2003. Glucocorticoid-Induced Down Regulation of Fas mRNA Abundance in Bovine Neutrophils. International Symposium on Animal Functional Genomics. May 9-11, 2003. Kellogg Center, Michigan State University. (poster presentation).





Coussens, P.M. 2003. A model for immune responses to M. avium subspecies paratuberculosis in cattle. Infection and Immunity (Submitted for Publication)





Coussens, P.M., A. Jeffers, and C. Colvin, 2003. Rapid and transient activation of gene expression in peripheral blood mononuclear cells from Johnes Disease positive cows exposed to Mycobacterium paratuberculosis in vitro. Microbial Pathogenesis (In press).





Coussens, P.M. C.J. Colvin, G.J.M. Rosa, J.Perez Laspiur, and M.D. Elftman. 2003. Evidence for a novel gene expression program in peripheral blood mononuclear cells from M. paratuberculosis infected cattle. Infection and Immunity 71(11), 6487-6498.





Coussens, P.M., N. Verman, M.A. Coussens, and A.M. McNulty. 2003. Cytokine gene expression in peripheral blood mononuclear cells and tissues of cattle infected with Mycobacterium avium subspecies paratuberculosis: Evidence for an inherent pro-inflammatory gene expression pattern. Infection and Immunity (Submitted for Publication).





Elftman M., P.M. Coussens, and J.J. Ireland. 2003. Effects of estrogen on bovine macrophage gene expression and function. International Symposium on Animal Functional Genomics, Michigan State University, May 9-11, 2003.





Ireland, J.J., and D.S. Burns. 2003. Numbers of antral follicles that grow during different follicular waves in individual cattle are highly repeatable. Abstract presented to 36th Annual Meeting of the Society for Study of Reproduction, July 19-22, Cincinnati, OH.





Jimenez-Krassel, F., and J.J. Ireland. 2003. The negative action of inhibin on estradiol production by bovine granulosa cells is calcium dependent. Abstract presented to 36th Annual Meeting of the Society for Study of Reproduction, July 19-22, Cincinnati, OH.





Jimenez-Krassel, F., Winn, M.E., Burns, D., Ireland, J.L.H., and Ireland, J.J. 2003. Evidence for a negative intrafollicular role for inhibin in regulation of estradiol production by granulosa cells. Endocrinology 144:1876-1886.





Kizilkaya, K., P. Carnier, A. Albera, G. Bittante, and R.J. Tempelman. 2003. Cumulative t-link threshold models for the genetic analysis of calving ease scores. Genetics, Selection, Evolution 35:489-512.





Kobayashi, Y., Huang, R., Yao, J., Jimenez-Krassel, F., Ireland, J.J., Coussens, P.M., and Smith, G.W. 2003. Differential expression of cocaine and amphetamine regulated transcript (CART) mRNA within the bovine ovary. Abstract presented to 36th Annual Meeting of the Society for Study of Reproduction, July 19-22, Cincinnati, OH.





Madsen, S.A., L-C. Chang, M-C. Hickey, G.J. M. Rosa, P.M. Coussens, and J.L. Burton. 2003. Microarray analysis of gene expression in blood neutrophils of parturient cows. Physiological Genomics (in press; also see http://physiolgenomics.physiology.org/papbyrecent.shtml).





Madsen, S.A., L-C. Chang, M-C. Hickey, P.M. Coussens, G.J.M. Rosa, and J.L. Burton. 2003. Gene expression profiling and apoptosis phenotyping indicate that parturient steroids promote survival in bovine blood neutrophils. International Symposium on Animal Functional Genomics. May 9-11, 2003. Kellogg Center, Michigan State University. (poster presentation).





Pagan, M., Davis, M.E., Stick, D.A., Simmen, R.C.M., Raney, N.E., Tempelman, R.J., and C.W. Ernst. 2003. Evaluation of serum insulin-like growth factor binding proteins (IGFBP) in Angus cattle divergently selected for serum IGF-I concentration. Domestic Animal Endocrinology (in press).





Suchyta, S.P., S. Sipkovsky, M. Coussens, R. Kruska, A. Jeffers, A. McNulty, R.J. Tempelman, R.G. Halgren, P.M. Saama, D.E. Bauman, Y.R. Boisclair, J.L. Burton, R.J. Collier, E.J. DePeters, T.A. Ferris, M.C. Lucy, M.A. McGuire, J.F. Medrano, T.R. Overton, T.P. Smith, G.W. Smith, T.S. Sonstegard, J.N. Spain, D.E. Spiers, J. Yao, and P.M. Coussens. 2003. Development and testing of a high-density cDNA microarray resource for cattle. Physiological Genomics (in press; also see http://physiolgenomics.physiology.org/cgi/reprint/00094.2003v1).





Toelboell, T., P.S.D. Weber, L-C. Chang, K. Buckham, and J.L. Burton. 2003. Dexamethasone-Induced Down Regulation of CD62L Gene Expression in Neutrophils is Mediated by the Glucocorticoid Receptor (GR). International Symposium on Animal Functional Genomics. May 9-11, 2003. Kellogg Center, Michigan State University. (poster presentation).





Tooker, B.C., and P.M. Coussens. 2003. Phagocytosis of M. paratuberculosis fails to activate expression of NADH Dehydrogenase and Nucleolin-Related Protein in bovine macrophagesImmunology Letters (Accepted for Publication).





Weber, P.S.D., T. Toelboell, J. Durrett-Tirrill, P.M. Saama, and J.L. Burton. 2003. Bone marrow neutrophils contribute minimally to the CD62L mRNA and protein expression profiles of blood neutrophils in glucocorticoid-challenged cattle. International Symposium on Animal Functional Genomics. May 9-11, 2003. Kellogg Center, Michigan State University. (poster presentation).





Yao, J., R. Huang, Y. Kobayashi, A. Bettegowda, P.M. Coussens, J.J. Ireland, and G.W. Smith. 2004. Identification and characterization of expression of JY-1: A novel oocyte-specific gene in cattle. Abstract presented to 36th Annual Meeting of the Society for Study of Reproduction, July 19-22, Cincinnati, OH.





Yao J, Ren X, Ireland JJ, Coussens PM, GW Smith. 2004. Generation of a bovine oocyte cDNA library: A valuable resource for identification of key oocyte-specific genes. Plant & Animal Genomes XII Conference, Town & Country Convention Center, San Diego, CA, January 10-14, 2004.





MINNESOTA





Chrystal, M.A. (2003) Marker assisted selection in dairy cattle using a mixed model approach. Ph.D. Thesis (Thesis advisor: Y. Da), Department of Animal Science, University of Minnesota, September 20, 2003.





Garbe, J. R. and Y. Da. (2003) Genealogy graphing for large complex populations: the example of European royal genealogy data. Journal of American Human Genetics, Supplement to Vol. 73, p.605, The 53rd Annual Meeting of The American Society of Human Genetics.



London, N. R. and Y. Da. (2003) Optimum marker spacing for QTL detection. Journal of American Human Genetics, Supplement to Vol. 73, p.615, The 53rd Annual Meeting of The American Society of Human Genetics.





London, N.R, J.R. Garbe, S.M. Schmutz, M.S. Abrahamsen, and Y. Da. (2003) Linkage analysis for mapping genes of sex-influenced traits. Mammalian Genome 14:261-267.





Patterson, E.E., J.R. Mickelson, Y. Da, M.C. Roberts, A. McVey, D. OBrien, G. Johnson, and P.J. Armstrong.(2003) Clinical characteristics and inheritance of idiopathic epilepsy in Vizslas. Journal of Veterinary Internal medicine. 17: 319-325.





Reed, K. M., L. D. Chaves, J. R. Garbe, Y. Da, and D. E. Harry. (2003) Allelic variation and genetic linkage of avian microsatellites in a new turkey population for genetic mapping. Cytogenetics and Genome Research (In press)





Wansheng Liu, Craig W. Beattie, F. Abel Ponce de Lesn. 2003. Bovine Y chromosome microsatellite polymorphisms. Cytogenet. Genome Res. (in press)



Wansheng Liu & F. Abel Ponce de Lesn. 2003. Development of a BAC-based physical map of the euchromatic region of the bovine Y-chromosome. Conference Abstract, PAG-XI. P586.





Wan-Sheng Liu, Craig W. Beattie, Noelle E. Cockett, F. Abel Ponce de Lesn. 2004. Comparative Analysis of 38 Bovine Y-Chromosome Microsatellites in Cattle, Sheep and Goat. Conference Abstract, PAG-XII. Submitted.





Xu, J. and Y. Da. (2003) Genetic sampling and chiasm interference affect QTL mapping accuracy. Journal of American Human Genetics, Supplement to Vol. 73, p.617, The 53rd Annual Meeting of The American Society of Human Genetics.





OHIO





Chung, H., S. Chen, D. Yoon, I. Cheong, S. Lee, M. Davis, and C. Hines. 2003. Detection of SNPs on the ovine skeletal muscle specific calpain gene using PCR-SSCP analysis. J. Anim. Sci. 81 (Suppl. 1):252.





Davis, M.E., S.L. Boyles, S.J. Moeller, and R.C.M. Simmen. 2003. Genetic parameter estimates for serum insulin-like growth factor I concentration and ultrasound measurements of backfat thickness and longissimus muscle area in Angus beef cattle. J. Anim. Sci. 81:2164-2170.





Ge, W., M.E. Davis, H.C. Hines, K.M. Irvin, and R.C.M. Simmen. 2003. Association of single nucleotide polymorphisms in the growth hormone and growth hormone receptor genes with blood serum insulin-like growth factor I concentration and growth traits in Angus cattle. J. Anim. Sci. 81:641-648.





Yilmaz, A., M.E. Davis, and R.C.M. Simmen. 2003. Estimation of (co)variance components for reproductive traits in Angus beef cattle divergently selected for blood serum IGF-I concentration. J. Anim. Sci. (submitted).





Yilmaz, A., M.E. Davis, H.C. Hines, and R.C.M. Simmen. 2003. Age at puberty in heifers divergently selected for blood serum IGF-I concentration. J. Anim. Sci. (submitted).





Yilmaz, A., M.E. Davis, and R.C.M. Simmen. 2003. Divergent selection for blood serum insulin-like growth factor I concentration does not change age of Angus heifers at puberty. J. Anim. Sci. 81 (Suppl. 1):255.





Yilmaz, A., M.E. Davis, R.C.M. Simmen, and M. Yamaguchi. 2003. Densitometric analysis of myofibrillar proteins in muscle samples from Angus bulls with high or low blood serum IGF-I concentration. J. Anim. Sci. 81 (Suppl. 1):314.





Zhao, Q., M.E. Davis, and H.C. Hines. 2003. Associations of polymorphisms in the Pit-1 gene with growth and carcass traits in Angus beef cattle. J. Anim. Sci. (submitted).





Yilmaz, A., M.E. Davis, R.C.M. Simmen, and H.C. Hines. 2003. Estimation of correlations of reproductive traits with blood serum IGF-I concentration in Angus beef cattle. J. Anim. Sci. 81 (Suppl. 1):315.





Zhao, Q., M.E. Davis, and H.C. Hines. 2002. Polymorphisms in the bovine Pit-1 gene and their associations with growth and carcass traits in beef cattle. Bos taurus Pit-1 gene, exon 3. GenBank Accession No. AY183915.





Zhao, Q., M.E. Davis, and H.C. Hines. 2002. Polymorphisms in the bovine Pit-1 gene and their associations with growth and carcass traits in beef cattle. Bos taurus Pit-1 gene, exon 4 and partial cds, bases 1 to 1353. GenBank Accession No. AY183916.





Zhao, Q., M.E. Davis, and H.C. Hines. 2002. Polymorphisms in the bovine Pit-1 gene and their associations with growth and carcass traits in beef cattle. Bos taurus Pit-1 gene, exon 4 and partial cds, bases 1 to 885. GenBank Accession No. AY183917.





PENNSYLVANIA





Vallejo, R.L., Y.L. Li, G.W. Rogers, and M.S. Ashwell. 2003. Genetic diversity and background linkage disequilibrium in the North American Holstein cattle population. J. Dairy Sci., Accepted.





Vallejo, R.L. 2003. Power to detect loci linked to common diseases of dairy cattle using identical-by-descent based methods of half-sib pair linkage analysis. J. Anim. Sci. 81:160 (Suppl. 1).





USDA-ARS-BARC





Koltes, J., Berger, P.J., Dekkers, J.C., Healey, M.H., Ashwell, M.S., Shanks, R.S., Schlesser, H., Lewin, H.A. Evidence for major quantitative trait loci affecting perinatal survival in two elite Holstein sire families. Proceedings of the John M. Airy Beef Cattle Genetics Symposium. 2003. p. 131.





Berger, P.J., Koltes, J., Healey, M.H., Ashwell, M.S., Shanks, R.S., Schlesser, H., Lewin, H.A. Putative quantitative trait loci affecting perinatal survial in eleven Holstein families. Journal of Dairy Science. 2003. v. 86. p. 161.





USDA-ARS-NADC





Neill, J.D., and J.F. Ridpath. 2003. Gene expression changes in BVDV2-infected MDBK cells. Biologicals 31:97-102.





Neill, J.D., and J.F. Ridpath. 2003. Gene expression changes in MDBK cells infected with genotype 2 bovine viral diarrhea virus. Vet. Microbiol. 96:301-312.





Neill, J.D., and J.F. Ridpath. 2003. Remodeling of cellular functions following infection with bovine viral diarrhea virus type 2 as determined using serial analysis of gene expression. International Symposium on Animal Functional Genomics, Michigan State University, East Lansing, MI.





Neill, J.D., and J.F. Ricpath. 2003. Serial analysis of gene expression in bovine viral diarrhea virus 2 infected cells provides evidence for inhibition of cap-dependent translation initiation. American Society for Virology , Davis CA.





VERMONT





Wellnitz, O. and D.E. Kerr. 2003. Establishment of a bovine cell-culture system to study the genomic response of mammary epithelial cells to infection with Staphylococcus aureus. Journal of Dairy Science 86 (Suppl. 1):92.

03/11/2005

ARIZONA

Henderson, D.A. 2005. A Bayesian Statistical Method for the Detection of Differential Gene Expression and Control of Multiple Hypothesis Testing With Gene Expression Microarray Data. 2005 ENAR Meeting, Austin, TX

Henderson, D.A. 2005. Stochastic Search Variable Selection For The Detection Of Differential Gene Expression. Intl. PAG XIII, San Diego, CA

Henderson, D.A. 2004. Microarray Data Analysis. In Bioinformatics. David Mount, Ed. Cold Spring Harbor Press.

Stiening CM, Hoying JB, Abdallah MB, Coussens PM, Collier RJ. 2005. Effects of heat stress on morphology and gene expression of bovine mammary epithelial cells (BMEC) in collagen gel culture. J. Dairy Sci. submitted abstract.

CALIFORNIA

Kao, B. T., E. J. DePeters, and A. L. Van Eenennaam. 2005. Endogenous Production of Omega-3 Fatty Acids in the Mammary Gland of Transgenic Mice. Abstract # P763. Final program and abstract guide. XIII International Plant & Animal Genome Meeting, San Diego, CA, Jan.15-19, 2005. http://www.intl-pag.org/pag/13/abstracts/PAG13_P763.html

Morimoto, K.C. 2004. transgenic expression of C. elegans omega-3 and delta-12 desaturases in mammalian cells. M.S. thesis in Animal Science, UC Davis.

Morimoto, K.C., A. L. Van Eenennaam, E. J. DePeters and J. F. Medrano 2005. Endogenous Production of Omega-3 and Omega-6 Fatty Acids in Mammalian Cells. J. Dairy Science 88(3) 1142-1146.

Van Eenennaam, A. L. 2004. Genetic Engineering in California Agriculture. 30 minute UC peer-reviewed video. ANRUCTV 04-06, University of California, Division of Agriculture and Natural Resources. 6502V (VHS) or 6502D (DVD)
http://groups.ucanr.org/anronuctv/Video_Program_Sales_Information/

Van Eenennaam, A. L. 2004. DNA-based Marker-Assisted Selection in Beef Cattle. Chapter in Cow-Calf Management Guide & Cattle Producers Library. University of Idaho Moscow, ID. (In press.)

Van Eenennaam, A. L. 2005. DNA-based Biotechnologies. Chapter in Beef Sire Selection Manual, National Beef Cattle Evaluation Consortium Educational Committee. Submitted.

Van Eenennaam, A. L. 2005. What is the future of animal biotechnology ? California Agriculture. Submitted.
Van Eenennaam, A. L. NC1010 website (http://animalscience.ucdavis.edu/LivestockBiotechnology)
Van Eenennaam, A. L. UC Davis Animal Genomics and Biotechnology Cooperative Extension Program website (http://animalscience.ucdavis.edu/animalbiotech)
Wong, M.I. and J.F. Medrano 2005. A Primer on Real Time PCR for mRNA Quantitation. (Review) BioTechniques (in press).
ILLINOIS
Loor, J. J., J. K. Drackley, H. M. Dann, R. E. Everts, S. L. Rodriguez-Zas, H. A. Lewin. 2004. Gene expression patterns in liver of dairy cows from dry-off through early lactation using a bovine cDNA microarray. Federation of American Societies for Experimental Biology Experimental Biology April 2004, Abstract # 822.4 (http://select.biosis.org/faseb/eb2004_data/FASEB004847.html)

Loor, J. J., H. M. Dann, R. E. Everts, S. L. Rodriguez-Zas, H. A. Lewin, and J. K. Drackley. 2004. Mammary and hepatic gene expression analysis in peripartal dairy cows using a bovine cDNA microarray. Annual Meeting of the American Society of Animal Sciences. J. Anim. Sci. 82(Suppl. 1):103, T134.

Loor, J. J., D. B. Carlson, R. E. Everts, S. L. Rodriguez-Zas, H. A. Lewin, and J. K. Drackley. 2004. Gene expression profiles in liver of dairy cows in response to feed restriction using a bovine cDNA microarray. Annual Meeting of the American Society of Dairyl Sciences. J. Dairy Sci. 87(Suppl. 1):103, T136.

Loor, J. J., N. A. Janovick, R. E. Everts, S. L. Rodriguez-Zas, H. A. Lewin, and J. K. Drackley. 2004. Adipose, mammary, and hepatic gene expression profiling in lactating dairy cows using a bovine cDNA microarray. Annual Meeting of the American Society of Dairy Sciences. J. Dairy Sci. 87(Suppl. 1):103, T135.

Rodriguez-Zas, S. L., M. R. Band, R. E. Everts, B. R. Southey, Z. L. Liu, H. A. Lewin. 2004. Comparison of normalization and models for the analysis of gene expression data. Annual Meeting of the American Society of Animal Sciences. J. Anim. Sci. 82(Suppl. 1):377, W256.

Rodriguez-Zas, S. L., J. J. Loor, J. K. Drackley, and H. A. Lewin. 2004. Application of a random regression model to gene expression profiling. Annual Meeting of the American Society of Animal Sciences. J. Anim. Sci. 82(Suppl. 1): 242, abs. 365.

IOWA

Hu, Z.-L., K. Glenn, A.M. Ramos, C.J. Otieno, J.M. Reecy, and M.F. Rothschild. 2005. Expeditor: A pipeline for designing primers Using Human Gene Structure and Livestock Animal EST Information. Journal of Heredity 96:1-3.

Soller, M. and J.M. Reecy. 2004. QTL mapping and cloning in beef cattle. AgBioTechNet Proceedings 004 paper 3:1-8.

Max F. Rothschild, Susan J. Lamont, James M. Reecy. Current Status of Animal Genomics. Proceedings Annual AAAS meeting, Washintgon DC Feb 17-19, 2005

KENTUCKY

M. Z. Fan, J. C. Matthews, N. M. P. Etienne, D. G. Burrin, and B. Stoll. 2004. Expression of Apical Membrane L-glutamate Transporters in Neonatal Porcine Epithelial Cells Along the Small Intestinal Crypt-villus Axis. American Journal of Physiology- Gastrointestinal and Liver Physiology 287:G385-G398.

Novak, D., F. Quiggle, and J. C. Matthews. 2004. Androgen Secretion by Rcho-1 Cells is Independent of Extracellular Glutamate Concentration. Placenta 25:548-552.

J. C. Matthews. Expression and Function of Non-Organelle Glutamate Transporters To Support Peripheral Tissue Function. 2004. In: S. Gill and O. Pulido (Eds.) Glutamate Receptors in Peripheral Tissues: Excitatory Transmission Outside the Central Nervous System. Chapter 1, pp. 1-30. Kluwer Academc/Plenum Press, New York.

G. L. Sipe, S. E. Kitts, K. R. McLeod, and J. C. Matthews. 2004. Chlortetracycline, but not Synovex-S, Differentially Affects Tissue Expression of High-Affinity Glutamate Transporters in Fattening Steers. Journal of Animal Science 82 (suppl. 1):42.

S. E. Kitts, J. C. Matthews, G. L. Sipes, T. S. Rumsey, T. H. Elasser, R. L. Baldwin, and K. R. McLeod. 2004. Effects of Chlortetracycline (CTC) and Steroidal Implant on Growth and Plasma Growth Hormone (GH) and Thyroid-Stimulating Hormone (TSH) After Challenge with Thyroid-Releasing Hormone (TRH) and GH-Releasing Hormone (GHR) on Finishing Beef Steers. Journal of Animal Science 82 (suppl. 1):41.

MASSACHUSETTS

Blackburn, A.C., McLary, S.C., Naeem, R., Luszcz, J., Stockton, D.W., Donehower, L.A., Mohammed, M., Mailhes, J.B., Soferr, T., Naber, S.P., Otis, C.N., and Jerry, D.J. 2003. Loss of heterozygosity occurs via mitotic recombination in Trp53+/- mice and associates with mammary tumor susceptibility of the BALB/c strain. Cancer Res. 64:5140-5147.

MICHIGAN

Abdel-Azim, G.A., A.E. Freeman, M.E. Kehrli, Jr., S.C. Kelm, J.L. Burton, A.L. Kuck, and S. Schnell. 2005. Genetic basis and risk factors for infectious and noninfectious diseases in US Holsteins. I. Estimation of genetic parameters for single diseases and general health. J. Dairy Sci. 88 (in press, to appear in the March 2005 issue).
Burton, J.L. 2003. Functional Genomics of the Stress-Immune Axis. International Agriculture Biotechnology Short Course. Michigan State University. May, July, and August, 2003. (three invited lectures).

Burton, J.L. 2003. Animal Functional Genomics Research at Michigan State University: Connecting Animal Agriculture With Mainstream Biology. Department of Biology seminar series, Hope College, Michigan. Nov 21, 2003.

Burton, J.L. 2004. Stress-Immune Interactions in Dairy Cattle: New Understanding From a Functional Genomics Perspective. In: Proceedings of the Prince Agri Products, Inc. 24th Annual Feed Ingredients Conference. Held at the West Des MoinesMarriot Hotel, Des Moines, IA, August 17-18, 2004 (CD available from Prince Agri, Inc.).

Burton, J.L, P. Coussens, M. VandeHaar, M. Allen, G. Smith, and J. Ireland. 2004. From Genes to Dairy Farms. Michigan Dairy Review 9(1): 12-15 (see Jan 2004 issue of the MDR at http://www.msu.edu/user/mdr/).

Burton, J.L., S.A. Madsen, L-C. Chang, P.S.D. Weber, G.J.M. Rosa, L.K. Matukumalli, and T.S. Sonstegard. 2005. Expression Profiles and SNP Analysis of Genes That Regulate Neutrophil Apoptosis, Endothelial Adhesion, and Extracellular Matrix Remodeling at Parturition in Dairy Cows. Proceedings of the Plant and Animal Genome conference, Jan 2005. San Diego, Ca. Confirmation String: jeanneburton_100404_1839 (poster P694).

Burton, J.L., S.A. Madsen, L-C. Chang, P.S.D. Weber, K.R. Buckham, and L. Neuder. 2004. Gene Expression Changes During Glucocorticoid Challenge of Bovine Neutrophils and Implications for Immune Cell Function. Session on Genetic and Genomic Techniques in the Study and Management of Production Diseases. 12th International Conference on Production Diseases. Michigan State University. July, 2004 [invited abstract and oral presentation].

Burton, J.L., S.A. Madsen, L-C. Chang, P.S.D. Weber, K.R. Buckham, and P.M. Coussens. 2004. Parturition-Induced Changes in Neutrophil Gene Expression: Implications for Cell Function. FASS annual joint ADSA/ASAS/PSA Animal Health Program Symposium: Integrative aspects of immunity, nutrient metabolism, and production in livestock. St. Louis, MO. July, 2004 [abstract and invited oral presentation].

Burton, J.L, S.A. Madsen, L-C. Chang, P. S.D. Weber, K.R. Buckham, R. van Dorp, M-C. Hickey, and B. Earley. 2005. Gene Expression Signatures in Neutrophils Exposed to Glucocorticoids: a New Paradigm to Explain Neutrophil Dysfunction in Parturient Dairy Cows. Invited Review, Vet. Immunol. Immunopathol. (in press).
Burton, J.L., S.A. Madsen, L.-C. Chang, K.R. Buckham, L.E. Neuder, and P.S.D. Weber. 2005. Microarray analysis of bovine neutrophils around parturition: implications for mammary gland and reproductive tract health. Invited paper in the Proceedings of the 12th International Conference on Production Diseases (ICPD) in Farm Animals. Held at the Kellogg Center, Michigan State University, East Lansing. MI, July 19-22, 2004 (in press).

Chang, L-C, P.S.D. Weber, S.A. Madsen, T. Toeboell, and J.L. Burton. 2004. Fas gene expression is transcriptionally regulated by glucocorticoids in bovine blood neutrophils. Proceedings of the 85th Annual Meeting of the Conference of Research Workers in Animal Diseases. Chicago, IL. Nov. 14-16, 2004. (abstract 127 and oral presentation).

Chang, L-C., R. van Dorp, P.S.D. Weber, K.R. Buckham, and J.L. Burton. 2004. Parturition-induced gene expression signatures in bovine peripheral blood mononuclear cells. Session on Genetic and Genomic Techniques in the Study and Management of Production Diseases. 12th International Conference on Production Diseases. Michigan State University. July, 2004 [abstract and oral presentation].

Chang, L.-C., S.A. Madsen, T. Toelboell, P.S.D. Weber, and J.L. Burton. 2004. Effects of glucocorticoids on Fas gene expression in bovine blood neutrophils. J. Endocrinol. 183:569-583.

Coussens, P.M. 2004. A Model for Immune Responses to Mycobacterium paratuberculosis. Infect. Immunity (Minireviews), 72:3089-3096.

Coussens, P.M. 2004. Development of gene expression signatures for chronic infectious diseases, a bovine model. International Conference on Immunogenomics, Budaphest Hungary October 11-14, 2004.

Coussens, P.M. 2004. Use of Host Genomics to Elucidate Immune Effector Mechanisms. International Veterinary Immunology Symposium, Quebec City, Quebec. July 25-30, 2004.

Coussens, P.M., C. B. Pudrith, X. Ren, S. P. Suchyta, J. R. Stabel, K. Skovgaard, and P.M.H. Heegaard. 2005. Johnes disease in cattle is associated with enhanced expression of genes encoding IL-5, GATA-3, tissue inhibitors of matrix metalloproteinases 1 and 2, and factors promoting apoptosis in peripheral blood mononuclear cells. Vet. Immunol. Immunopathol. (in press).

Coussens, P.M., M.J. Coussens, B.R. Tooker, and W. Nobis. 2004. Structure of the bovine NRAMP1 gene and identification of novel polymorphisms. DNA Sequence. 15:15-25.

Coussens, P.M., N. Verman, M.A. Coussens, M.D. Elftman, and A.M. McNulty. 2004. Cytokine Gene Expression in Peripheral Blood Mononuclear Cells and Tissues of Cattle Infected with Mycobacterium avium subspecies paratuberculosis: Evidence for an Inherent Pro-inflammatory Gene Expression Pattern. Infect. Immunity 72:1409-1422.

Eicher, S., and J.L. Burton. 2005. Immune System: Stress Effects. Encyclopedia of Animal Science. Ed. W.C. Pond and A.W. Bell. Marcel Dekker Publisher, New York, NY (in press; see www.dekker.com).

Evans, A.C.O., J.L.H. Ireland, M.E. Winn, P. Lonergan, G.W. Smith, P.M. Coussens, and J.J. Ireland. 2004. Identification of candidate estradiol target genes involved in apoptosis and selection of dominant follicles during follicular waves. Biol. Reprod. 70:1475-1484.

Glass, E., and P.M. Coussens. 2005. Functional genomics of host  pathogen interactions in species of veterinary importance. Vet. Immunol. Immunopathol. (in press).

Hill, E.W., G. M. OGorman, M. Agaba, J.P. Gibson, O. Hanotte, S.J. Kemp, J. Naessens, P.M. Coussens, and D.E. MacHugh. 2005. Understanding bovine trypanosomiasis and trypanotolerance: the promise of functional genomics. Vet. Immunol. Immunopathol. (in press).

Kobayashi, Y., F. Jimenez-Krassel, Q Li, J.Yao, R. Huang, J.J. Ireland, P.M. Coussens, and G.W. Smith. 2004. Evidence that Cocaine- and Amphetamine- Regulated Transcript is a Novel Intraovarian Regulator of Follicular Atresia. Endocrinol. 145:5373-5383.

Madsen, S.A., L-C. Chang, and , J.L. Burton. 2004. Glucocorticoid modulation of Bcl-2 family members A1 and Bak in bovine blood neutrophils. Proceedings of the 85th Annual Meeting of the Conference of Research Workers in Animal Diseases. Chicago, IL. Nov. 14-16, 2004. (abstract 136 and oral presentation). Placed 1st in the American Association of Veterinary Immunologists graduate student oral competition.

Madsen, S.A., L-C. Chang, M-C. Hickey, G.J. M. Rosa, P.M. Coussens, and J.L. Burton. 2004. Microarray analysis of gene expression in blood neutrophils of parturient cows. Physiol. Genomics 16:212-221.

Madsen, S.A. M-C. Hickey, and J.L. Burton. 2003. Glucocorticoids in parturient serum activate steroid receptors to modulate apoptosis in bovine blood neutrophils. Proc. 84th Annual Meeting of the Conference of Research Workers in Animal Diseases. Nov. 12-14, 2003. Chicago, IL (abstract 100 and oral presentation; 2nd place award in the American Association of Veterinary Immunologists graduate student oral competition; also see the AAVI On-line Newsletter at: http://www.cvm.missouri.edu/aavi/newsletter_3_04/newsletter_3_04.htm#StudentAwards.

Ortiz-Colón, G., A.C. Grant, J.L. Burton, M.E. Doumit and D.D. Buskirk. 2004. Dexamethasone Downregulates Glucocorticoid Receptor Expression in Cultured Bovine Preadipocytes. FASS annual joint ADSA/ASAS/PSA meeting. St. Louis, MO. July, 2004 (abstract and oral presentation).

Patel, O.V., S.P. Suchyta, S.S. Sipkovsky, J. Yao, J.J. Ireland, P.M. Coussens, and G.W. Smith. 2005. Validation and application of a high fidelity mRNA linear amplification procedure for profiling gene expression. Vet. Immunol. Immunopathol. (in press).

Rhoads, R.P., J.D. Sampson, R.J. Tempelman, S.S. Sipkovsky, P.M. Coussens, M.C. Lucy, J.N. Spain, and D.E. Speiers. 2004. Hepatic gene expression profiling in lactating dairy cows during an initial period of hyperthermia. Presented at the Joint ADSA-ASAS Meetings, St. Louis, MO, July 24-28,2004.

Saama, P.M., J. B. Jacob, M.E. Kehrli, Jr., A. E. Freeman, S.C. Kelm, A.L. Kuck, R. J. Tempelman, and J.L. Burton. 2004. Genetic Variation in Bovine Mononuclear Leukocyte Responses to Dexamethasone. J. Dairy Sci. 87:3928-3937.

Steibel, J. P., Tempelman, R. J., Rosa, G. J. M. Power and sample size calculations for two color microarray experiments with biological and technical replication. J. Anim. Sci. 82 (Suppl. 1): 415, 2004.

Steibel, J. P., Rosa, G. J. M., Tempelman, R. J. Thick-tailed and heteroskedastic linear models for the analysis of cDNA microarray data. Presented at the Joint Statistical Meetings 2004 Abstracts, Toronto - Canada, 2004.

Suchyta, S.P., Sipkovsky S., Halgren, R.G., Kruska, R.,Elftman, M., Weber-Nielsen, M., Vandehaar, M.J., Xiao, L., Tempelman, R.J., and Coussens, P.M. 2003. Bovine Mammary Gene Expression Profiling Using A cDNA Microarray Enhanced For Mammary Specific Transcripts Physiological Genomics 16: 8-18.

Tempelman, R.J. 2005. Assessing statistical precision, power, and robustness of alternative experimental designs for two color microarray platforms based on mixed effects models. Veterinary Immunology and Immunopathology (in press).

Tempelman, R.J. 2004. Experimental Design for Gene Expression Microarrays. 2004. Presented at the Second Long OligoNucleotide Microarray Workshop, University of Arizona, Tuscon, May 14, 2004. http://ag.arizona.edu/microarray/workshopMay2004.html .

Tempelman, R.J. 2004. Experimental Design for Gene Expression Microarrays. 2004. Presented at the Third Long OligoNucleotide Microarray Workshop, University of Arizona, Tuscon, December 16, 2004. http://ag.arizona.edu/microarray/workshopDec2004.html .

Tempelman, R.J., L. D. Douglass, and B.A. Craig. 2004. Mixed Model Workshop. A 2-day workshop presented at the ASAS-ADSA Joint Meetings, St. Louis, MO July 27-28, 2004.

Tempelman, R.J. and G.J.M. Rosa. 2004. Design and Analysis of Gene Expression Studies Using Microarrays (1-Day Continuing Education Course), Presented at the Joint Statistical Meetings, Toronto - Canada, 2004.

Tooker, B.C., and P.M. Coussens. 2004. Phagocytosis of M. paratuberculosis fails to Activate Expression of NADH Dehydrogenase and Nucleolin-Related Protein in Bovine Macrophages. FEMS Immunol. Lett. 93:137-142.

Weber, P.S.D., L.-C. Chang, T. Toelboell, and J.L. Burton. 2004. Mechanisms of glucocorticoid-induced L-selectin (CD62L) down-regulation in bovine blood neutrophils. Session on Genetic and Genomic Techniques in the Study and Management of Production Diseases. 12th International Conference on Production Diseases. Michigan State University. July, 2004 [abstract and oral presentation].

Weber, P.S.D., T. Toelboell, L-C. Chang, J. Durrett Tirrell, P.M. Saama, G.W. Smith, and J.L. Burton. 2004. Mechanisms of glucocorticoid-induced down regulation of neutrophil L-selectin: Evidence for effects at the gene expression level and primarily on blood neutrophils. J. Leuk. Biol. 75:815-827.

Weber, P.S.D., T. Toeboell, L-C Chang, and J.L. Burton. 2003. Glucocorticoid-induced down-regulation of L-selectin (CD62L) gene expression in bovine blood neutrophils is mediated by the glucocorticoid receptor (GR). Proc. 84th Annual Meeting of the Conference of Research Workers in Animal Diseases. Nov. 12-14, 2000. Chicago, IL (abstract 99 and oral presentation).

Yao, J., X. Ren, J.J. Ireland, P.M. Coussens, and G.W. Smith. 2004. Generation of a Bovine Oocyte cDNA Library and Microarray: Resources for Identification of Genes Important for Follicular Development and Early Embryogenesis. Physiol. Genomics 19:84-92.

Yao,J., X. Ren, J.J. Ireland, P.M. Coussens, and G.W. Smith. 2004. Generation of a bovine oocyte cDNA library: a valuable resource for identification of key oocyte-specific genes. Plant and Animal Genome Meeting San Diego, CA January 11-14, 2004.

MINNESOTA

Garbe, J. R. and Y. Da. (2004) Pedigraph 2.0, a software tool for the graphing and analysis of large complex pedigrees. Abstract book, p. 242, ADSA-ASAS-PSA Joint Annual Meeting, St. Louis, July 25-29, 2004.

Garbe, J. R. and Y. Da. (2004) A computerized approach to minimize inbreeding of breeding plans. Abstract book, p. 376, ADSA-ASAS-PSA Joint Annual Meeting, St. Louis, July 25-29, 2004.

Garbe, J. R. and Y. Da. (2004) Graphical visualization of two large complex populations using Pedigraph 2.0. Abstract book, p. 377, ADSA-ASAS-PSA Joint Annual Meeting, St. Louis, July 25-29, 2004.

Liu, W., C.W. and F. A. Ponce de León. 2004. Assignement of SRY, ANT3 and CSF2RA to the Bovine Y Chromosome by FISH and RH mapping. Animal Biotechnology, 15: 103-109.

London, N.R. (2004) Statistical theory and methods for mapping gender-affected genes and quantitative trait loci. Ph.D. Thesis. Department of Animal Science and Program in Molecular Veterinary Bioscience, University of Minnesota.

London, N. R. and Y. Da (2004) Statistical methods to detect imprinted QTL with gender specific recombination frequencies. Abstract book, p. 416, ADSA-ASAS-PSA Joint Annual Meeting, St. Louis, July 25-29, 2004.

London, N. R. and Y. Da (2004) Linkage analysis and experimental design for mapping imprinted genes. Final Abstracts Guide, page 254. Plant and Animal Genome XI, San Diego, USA, January 11 15, 2003.
Mao, Y. a and Y. Da. (2004) Statistical power for detecting epistasis QTL effects under the F-2 Design. Abstract book, p. 414, ADSA-ASAS-PSA Joint Annual Meeting, St. Louis, July 25-29, 2004.

Mizoshita, K., N. Ihara, C.M. Carpio, G.L. Bennett, F.A. Ponce de León, C.W. Beattie and Y. Sugimoto. Chromosomal mapping of 65 microsatellites developed from microdissected BTA14 and BTA20 chromosome-specific genomic libraries. Animal Genetics 35:408-410.

Xu, J. (2004) Statistical analysis for mapping linked quantitative trait loci. Ph.D. Thesis. Department of Animal Science, University of Minnesota.

Xu, J., J.R. Garbe, N.R. London, Y. Mao and Y. Da. (2004) Evaluation of three statistical methods for QTL analysis. Abstract book, p. 243, ADSA-ASAS-PSA Joint Annual Meeting, St. Louis, July 25-29, 2004.

MISSISIPPI

None reported

NORTH CAROLINA

Ashwell, M.S., Heyen, D.W., Sonstegard, T.S., Van Tassell, C.P. and Lewin, H.A. (2004) Detection of quantitative trait loci affecting conformation traits in Holstein cattle. Journal of Dairy Science. 87 (Suppl. 1): 414.

Ashwell, M.S., Heyen, D.W., Sonstegard, T.S., Van Tassell, C.P., Da, Y. VanRaden, P.M., Ron, M. Weller, J.I. and Lewin, H.A. (2004) Detection of quantitative trait loci affecting female fertility and milk production in ten Dairy Bull DNA Repository families. Journal of Dairy Science. 87: 468-475.

Connor, E.E., Sonstegard, T.S., Ashwell, M.S., Bennett, G.L. and Williams, J.L. (2004) Chromosomal mapping of 12 gene-associated markers in cattle identified novel regions of conserved synteny between the human and bovine genomes. Plant and Animal Genome XII: P630.

Connor, E.E., Sonstegard, T.S., Ashwell, M.S., Bennett, G.L. and Williams, J.L. (2004) An expanded comparative map of bovine chromosome 27 targeting dairy form QTL regions. Animal Genetics. 35: 265-269.

Connor, E.E., Sonstegard, T.S., Keele, J.W., Bennett, G.L., Williams, J.L., Papworth, R., Van Tassell, C.P. and Ashwell, M.S. (2004) Physical and linkage mapping of mammary-derived expressed sequence tags in cattle. Genomics. 83: 148-152.

Van Tassell, C.P., Sonstegard, T.S. and Ashwell, M.S. (2004) Mapping quantitative trait loci for dairy form in regions of chromosome 27 in two families of Holstein. Journal of Dairy Science. 87: 450-457.


OHIO

Pagan, M., M.E. Davis, D.A. Stick, R.C.M. Simmen, N.E. Raney, R.J. Tempelman, and C.W. Ernst. 2003. Evaluation of serum insulin-like growth factor binding proteins (IGFBP) in Angus cattle divergently selected for serum IGF-I concentration. Domestic Anim. Endocrin. 25:345-358.

Yilmaz, A., M.E. Davis, and R.C.M. Simmen. 2004. Estimation of (co)variance components for reproductive traits in Angus beef cattle divergently selected for blood serum IGF-I concentration. J. Anim. Sci. 82:2285-2292.

Zhao, Q., M.E. Davis, and H.C. Hines. 2004. Associations of polymorphisms in the Pit-1 gene with growth and carcass traits in Angus beef cattle. J. Anim. Sci. 82:2229-2233.

TEXAS

Bryan, T.M., Abbey, C.A., Raudsepp, T., Chowdhary, B.P., Gill, C.A., Ing, N.H., Blanchard, T. and Welsh, T.H., Jr (2004) Chromosome assignment of an equine glucorticoid receptor gene (GR) using fluorescence in situ hybridization (FISH) and radiation hybrid (RH) mapping. Anim. Genet. (accepted).

Dikeman, M.E., Pollak, E.J., Zhang, Z., Moser, D.W., Gill, C.A. and Dressler, E.A. (2004) Phenotypic ranges and relationships among carcass and meat palatability traits for fourteen cattle breeds, and heritabilities and expected progeny differences for Warner-Bratzler shear force in three beef cattle breeds. J. Anim. Sci. (submitted).
Fluharty, F.L., Gill, C.A., Raudsepp, T., Chowdhary, B.P. and Jackwood, D.L. (2004) Identification of a sequence characterized, amplified DNA marker associated with the potential for marbling in steers. Anim. Genet. (submitted).

Gill, C.A., Herring, A.D., Lunt, D.K., and Sanders, J.O. (2004) An overview of the McGregor Genomics Project: Mapping genes for production efficiency. Proceedings of the 50th annual Beef Cattle Short Course, August 2-4, College Station, TX. pp. H1-H8.

Herring, A. D. and Gill, C.A. (2004) Genetic Markers and Marker Assisted Selection in Beef Cattle. Proceedings of Ovagenix Customer Information Field Day, July 31, College Station, TX.

Amen, T.S., Herring, A.D., Gill, C.A. and Sanders, J.O. (2004) Investigation of birth weight and gestation length in Bos indicus-Bos taurus reciprocal cross calves produced through embryo transfer. 2004 Beef Cattle Research in Texas, pp. 1-3.

Moser, D.W., Thallman, R.M., Pollak, E.J., Dikeman, M.E., Gill, C.A., Koontz, S.R., Holm, T.R. and Dressler, E.W. (2004) Meeting consumer demands through genetic selection: the NCBA Carcass Merit Project. Proceedings of the 36th annual meeting of the Beef Improvement Federation, Sioux Falls, SD. pp. 42-44.

Rakowitz, K.R., Abbey, C.A., Schein, J., Adelson, D.L. and Gill, C.A. (2004) A 3Mb BAC contig and STS content map of the POLL critical interval on bovine chromosome one. (Abstract) Proceedings of the 29th International Conference on Animal Genetics, Tokyo, Japan, Sept. 11-16.

Amen, T.S., Herring, A.D., Gill, C.A. and Sanders, J.O. (2004) Investigation of gestation length in Bos indicus-Bos taurus reciprocal backcross calves produced through embryo transfer. J. Anim. Sci. 82 (Suppl. 1): 449 (Abstract #882).

Amen, T.S., Herring, A.D., Gill, C.A. and Sanders, J.O. (2004) Investigation of birth weight in Bos indicus-Bos taurus reciprocal backcross calves produced through embryo transfer. J. Anim. Sci. 82 (Suppl. 1): 449 (Abstract #882).

Chiu, R., Bosdet, I., Mathewson, C., Wye, N., Lee, D., Barber, S., Yang, G., Stott, J., Abbey, C., Motta de Carmo Costa, M., Gill, C., Hansen, C., Keele, J., Larkin, D., Meng, Y., Osoegawa, K., Schibler, L., Siddiqui, A., Snelling, W., Williams, J.L., Adelson, D., Archibald, A., Benkel, B., Caetano, A.R., Eggen, A., Holt, R., Jones, S., de Jong, P.J., Lewin, H., McEwan, J.C., Moore, S., Tellam, R., Zhao, S., Kappes, S., Marra, M. and Schein, J. (2004) A BAC physical map of the bovine genome. (Abstract) Proceedings of Plant and Animal Genome XII, San Diego, California, USA.

USDA-ARS-BARC

Ashwell, M.S., Heyen, D.W., Sonstegard, T.S., Van Tassell, C.P., Da, Y., VanRaden, P.M., Ron, M., Weller, J.I., Lewin, H.A. Detection of quantitative trait loci affecting milk production, health, and reproductive traits in Holstein cattle. J. Dairy Sci. 2004. v. 87. pp. 468-475.

Connor, E.E., Sonstegard, T.S. Ashwell, M.S., Bennett, G.L., Williams, J.L. An expanded comparative map of bovine chromosome 27 targeting dairy form QTL regions. Anim. Genet. 2004. v. 35. pp. 265-269.

Van Tassell, C.P., Sonstegard, T.S., Ashwell, M.S. Mapping quantitative trait loci affecting dairy conformation to chromosome 27 in two Holstein grandsire families. J. Dairy Sci. 2004. v. 87. pp. 450-457.

USDA-ARS-NADC

Neill, J.D. and J.F. Ridpath. 2004. Remodeling of cellular functions following infection with bovine viral diarrhea virus type 2 as indicated using Serial Analysis of Gene Expression. American Society for Virology. Montreal , Quebec, Canada

Neill, J.D. 2004. Functional genomics analysis of bovine viral diarrhea virus-infected cells: unraveling an enigma. International Conference on Production Diseases in Farm Animals, East Lansing, Michigan.

Neill, J.D., 2004. Functional genomics analysis of infection by bovine viral diarrhea virus type 2 in a bovine B-cell lymphosarcoma cell line. Conference of Research Workers in Animal Disease, Chicago, Illinois.


VERMONT

Wellnitz, O. and D.E. Kerr. 2004. Cryopreserved bovine mammary cells to model epithelial response to infection. Veterinary Immunology and Immunopathology 101:191-202.

Zhao, F.-Q., Zheng, Y.-C., Wall, E.H., and McFadden, T.B. 2005. Cloning and expression of bovine sodium/glucose cotransporters. J. Dairy Sci. 88, 182-194.

Zhao , F.-Q., Miller, P. J., Wall, E. H., Zheng, Y.-C., Dong, B. Neville, M. C., and McFadden, T. B. 2004. Bovine glucose transporter GLUT8: cloning, expression, and developmental regulation in mammary gland. Biochim. Biophys. Acta, 1680, 103-113.

Kerr, D.E. and O. Wellnitz. 2004. Cryopreserved bovine mammary cells to model epithelial response to infection. 7th International Veterinary Immunology Symposium. Quebec City, Canada.

Wellnitz, O. and D.E. Kerr. 2004. Mammary epithelial cell response to infection with differentbacteria. 55th Annual Meeting of the European Association for Animal Production. Bled, Slovenia.

Zheng, J., J.L. Ather, and D.E. Kerr. 2004. Functional characterization of the bovine lactoferrin gene promoter. 7th International Veterinary Immunology Symposium. Quebec City, Canada.

WISCONSIN

Khatib H. (2004) Imprinting of Nesp55 gene in cattle. Mamm Genome 15:663-667.

Khatib H. (2005). Monoallelic expression of the protease inhibitor gene in humans, sheep, and cattle. Mamm Genome 16:1-9 (in press).

Khatib H., Heifetz E., and Dekkers J. (2004). Association of the Protease Inhibitor Gene with Economic Traits in Holstein Dairy Cattle. J Dairy Sci. (in press).

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