04/09/2015

Books and Chapters

Cheng, H.H. and Lamont, S.J. 2013 Genetics of disease resistance. Pp. 70-86. In: Diseases of Poultry. 13th ed. D. E. Swayne, J.R. Glisson, L.R. McDougald, V. Nair, L. Nolan, and D.L. Suarez, Eds. Wiley-Blackwell, Ames

Delany, M.E. and T.H. O’Hare. 2013. Genetic stocks for immunological research (Appendix I). In Avian Immunology, 2nd Edition (editors: K.A. Schat, B. Kaspers and P. Kaiser). Elsevier: Academic Press, San Diego, CA. ISBN 9780123969651. 456 pp.

Erf, G. F. 2013. Autoimmune diseases of poultry. Avian Immunology, 2nd edition. Schat K. A., B. Kaspers, and P. Kaiser, editors. Elsevier, London, San Diego, CA. (in press)

Lamont, S.J., Dekkers, J.C.M., and Zhou, H. 2014. Immunogenetics and mapping immunological functions. Pp. 205-221. In: Avian Immunology. F. Davison, B. Kaspars, P. Kaiser, K.A. Schat, Eds., Elsevier, London, San Diego

van Ginkel, F.W. 2014. The Scourge of IBV. Auburn Speaks; (in press).

Peer-reviewed papers

Abernathy, J., C. Corkill, C. Hinojosa, X. Li, H. Zhou. 2013. Deletions in the pyruvate pathway of Salmonella Typhimurium alter SPI1-mediated gene expression and infectivity. Journal of Animal Science and Biotechnology 4:5. DOI: 10.1186/2049-1891-4-5.

Anderson, J. L., C. M. Ashwell, S. C. Smith, R. Shine, E. C. Smith, and R. L. Taylor, Jr. 2013. Atherosclerosis-susceptible and atherosclerosis-resistant pigeon aortic cells express different genes in vivo. Poult. Sci. 92:2668-2680

Anderson, J. L., S. C. Smith and R. L. Taylor, Jr. 2013. Atherosclerosis-susceptible and atherosclerosis-resistant pigeon aortic smooth muscle cells express different genes and proteins in vitro. In: Current Trends in Atherogenesis. R. Rezzani, (ed.) InTech, Inc., Rijeka, Croatia (Review) pp. 165-186 Accessed February 27, 2013 DOI: 10.5772/52948
http://www.intechopen.com/articles/show/title/atherosclerosis-susceptible-and-atherosclerosis-resistant-pigeon-aortic-smooth-muscle-cells-express-

B.G. de Jong, A. Lammers, L.A.A. Oberendorf, M.G.B. Nieuwland, H.F.J. Savelkoul, H.K. Parmentier. Genetic and phenotypic selection affect natural (auto-) antibody reactivity of chickens. In press, PlosOne, 8 mei 2013.

Burks, T. A. and R. L. Taylor, Jr. 2013. Genetic control of Rous sarcoma virus-induced tumor growth in chickens: Role of the major histocompatibility (B) complex. Animal Science Image Gallery. National Agriculture Library http://anscigallery.nal.usda.gov//index.php #5178 in press

C. J. Sample, K. E. Hudak, B. E. Barefoot, M. D. Koci, M. S. Wanyonyi, S. Abraham, H. F. Staats, E. A. Ramsburg. A mastoparan-derived peptide has broad-spectrum antiviral activity against enveloped viruses. Peptides. 48:96-105, 2013.

Cabral, R., P. Erickson, and R. L. Taylor, Jr. 2013. Processing effects on colostrum quality. Animal Science Image Gallery. National Agriculture Library http://anscigallery.nal.usda.gov//index.php #5181 in press

Cheng, H.H., Kaiser, P., and Lamont, S.J. 2013. Integrated genomic approaches to enhance genetic resistance in chickens. Annu. Rev. Anim. Biosci. 2013. 1:239–260

Coble, D.J., E. E. Sandford, T, Ji, J. Abernathy, D. Fleming, H. Zhou, S.J. Lamont. 2012. Impacts of Salmonella enteritidis infection on liver transcriptome in broilers. Genesis DOI: 10.1002/dvg.22351.

Coble, D.J., Sandford, E. E., Ji, T., Abernathy, J., Fleming, D., Zhou, H., and Lamont, S.J. 2013. Impacts of Salmonella enteritidis infection on liver transcriptome in broilers. Genesis 51:357–364

E. O. Oviedo-Rondón, N. M. Leandro, R. Ali, M. Koci, V. Moraes, and J. Brake. Broiler breeder feeding programs and trace minerals on maternal antibody transfer and broiler humoral immune response. Journal of Applied Poultry Research. 22:499-510, 2013.

Engel, A. T., R. K. Selvaraj, J. P. Kamil, N. Osterrieder, and B. B. Kaufer. 2012. Marek's disease viral interleukin-8 promotes lymphoma formation through targeted recruitment of B cells and CD4+ CD25+ T cells. J Virol 86: 8536-8545.

Erf, G.F. 2013. Autoimmune disease: unique research opportunities in the autoimmune vitiligo-prone Smyth line of chicken. World J. Immunol. (in press)

Erf., G.F. 2013. Laboratory Update - Gisela Erf. PASPCR Newsletter 21 (2):15-17.

G. den Hartog, R.P.M.A. Crooijmans, H.K. Parmentier, H.F.J. Savelkoul, N.A. Bos, A. Lammers. Ontogeny of the avian intestinal immunoglobulin repertoire: modification in CDR3 length and conserved VH-pseudogene usage. Molecular Immunology in press

Gadde, U., T. Rathinam, G. F. Erf, and H. D. Chapman. 2013. Cellular immune responses to infection with the protozoan parasite Eimeria adenoeides in turkey poults. Poult. Sci. (in press)

Gerritsen, G.J. Klaassen, G. Schuttert, S.M.G. Rouwers, H.K. Parmentier, F. Molist. The effect of a mixture of dairy-based feet ingredients, vegetable fats, and yest cell walls on performance and innate immunity of weaned piglets. J. Anim. Sci. 90: 269-271. 2012.

Gurjar, R.S., S. L. Gulley, and F.W. van Ginkel. 2013. Cell-mediated immune responses in the head-associated lymphoid tissues induced to a live attenuated avian coronavirus vaccine. Dev. Comp. Immunol. 41:715-722, 2013.

H.K. Parmentier, L.P.M. Verhofstad, G. De Vries Reilingh, M.G.B. Nieuwland. Breeding for high specific immune reactivity affects sensitivity to the environment and is negatively associated with egg production in layers. Poultry Science 91: 3044-3051, 2012.

H.T.L. Lai, M.G.B. Nieuwland, A.J.A. Aarnink, B. Kemp, H.K. Parmentier. Effects of two size classes of intratracheally administered airborne dust particles on primary and secondary specific antibody responses and body weight gain of broilers: a pilot study on the effects of naturally occurring dust. Poultry Science 91: 604-615, 2012.

Haq K, Schat KA, Sharif S. Immunity to Marek's disease: Where are we now? Dev Comp Immunol. 2013 Nov;41(3):439-46.

Haq K, Wootton SK, Barjesteh N, St Paul M, Golovan S, Bendall AJ, Sharif S. Small interfering RNA-mediated knockdown of chicken interferon-? expression. J Interferon Cytokine Res. 2013 Jun;33(6):319-27.

J. Groffen, H.K. Parmentier, W.A.C. Van de Ven, M. Van Weerd. Effect of different rearing strategies and age on levels of natural antibodies in saliva of Philippine crocodiles. Asian Herpetological Research: 4: 22-24, 2013.

Jia X., H. Zhou, D. Li, W. Liu, N. Yang. 2013. Copy number variations identified in the chicken using a 60K SNP BeadChip. Animal Genetics 44:276-84. DOI:10.1111/.

Kjærup, R.M., Skjødt K., Dalgaard T.S., and Juul-Madsen H.R. (2013). Chicken mannose-binding lectin (MBL) gene variants with influence on MBL serum concentration. Immunogenetics 65; 461-471. DOI: 10.1007/s00251-013-0689-6.

Kumar S, Kunec D, Buza JJ, Chiang HI, Zhou H, Subramaniam S, Pendarvis K, Cheng HH, Burgess SC. 2012. Nuclear Factor kappa B is central to Marek's disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo. BMC Syst Biol. 6:123. doi: 10.1186/1752-0509-6-123.

Maughan, MN, Dougherty LS, Preskenis LA, Ladman BS, Gelb, J., Jr., Spackman, EV, Keeler CL, Jr. 2013. Transcriptional analysis of the innate immune response of ducks to different species-­of-­origin low pathogenic H7 avian influenza virus. Virology Journal 10:94

Miller, M.M., C.M. Robinson, J. Abernathy, R.M. Goto, M. Hamilton, H. Zhou, and M.E. Delany Mapping of genes for olfactory receptors, cysteine-rich-domain containing scavenger receptors and other proteins to GGA 16, the chicken MHC microchromosome. In review.

Norup L.R., Dalgaard T.S.,Pleidrup J., Permin A., Schou T.W., Jungersen G., Fink D.R., and Juul-Madsen H.R. (2013). Comparison of parasite-specific immunoglobulin levels in two chicken lines during sustained infection with Ascaridia galli. Vet Parasitology 191: 187 - 190. DOI.org/10.1016/j.vetpar.2012.07.031.

Oven I, Resman K, Dušani? D, Ben?ina D, Keeler CL , Narat M. 2013. Diacylated lipopeptide from Mycoplasma†synoviae†mediates TLR15 induced innate immune responses. Veterinary Research (in press)

Pleidrup J.A.,Norup L.R., Dalgaard T.S., Rothwell L., Kaiser P., Permin A., Schou T.W., Fink D.R., Jungersen G., Sorensen P., and Juul-Madsen H.R. (2013). No protection in chickens immunised by the oral or intra-muscular immunisation route with Ascaridia galli soluble antigen. Avian Pathol. 2013 Jun;42(3):276-82. doi: 10.1080/03079457.2013.783199

Robinson, C.M., H.H. Cheng, and M.E. Delany. Marek's disease herpesvirus and chicken host genome interactions: Viral genome integration occurs early in infection and over a timeframe associated with latency, yet integration alone is not sufficient for cellular transformation. In review.

Shaikh SA, Katneni UK, Dong H, Gaddamanugu S, Tavlarides-­Hontz P, Jarosinski KW, Osterrieder N, Parcells MS. 2013. A deletion in the glycoprotein L (gL) gene of U.S. Marek's disease virus (MDV) field strains is insufficient to conferincreased pathogenicity to the bacterial artificial chromosome (BAC)-­based strain, RB-­1B. Avian Dis. 2013 :509-­18.

Shanmugasundaram, R., and R. K. Selvaraj. 2012. Effects of in vivo injection of anti-chicken CD25 monoclonal antibody on regulatory T cell depletion and CD4+CD25- T cell properties in chickens. Develop. Comp. Immunol. 36: 578-583.

Shanmugasundaram, R., and R. K. Selvaraj. 2012. In vivo lipopolysaccharide injection alters CD4+CD25+ cell properties in chickens. J. Anim. Sci. 90: 2498-2504.

St Paul M, Barjesteh N, Paolucci S, Pei Y, Sharif S. Toll-like receptor ligands induce the expression of interferon-gamma and interleukin-17 in chicken CD4+ T cells. BMC Res Notes. 2012 Nov 1;5:616.

St Paul M, Brisbin JT, Abdul-Careem MF, Sharif S. Immunostimulatory properties of Toll-like receptor ligands in chickens. Vet Immunol Immunopathol. 2013 Apr 15;152(3-4):191-9.

St Paul M, Paolucci S, Barjesteh N, Wood RD, Sharif S. Chicken erythrocytes respond to Toll-like receptor ligands by up-regulating cytokine transcripts. Res Vet Sci. 2013 Aug;95(1):87-91.

St Paul M, Paolucci S, Read LR, Sharif S. Characterization of responses elicited by Toll-like receptor agonists in cells of the bursa of Fabricius in chickens. Vet Immunol Immunopathol. 2012 Oct 15;149(3-4):237-44.

St Paul M, Paolucci S, Sharif S. Characterization of response initiated by different Toll-like receptor 2 ligands in chicken spleen cells. Res Vet Sci. 2013 Jul 30. doi:pii: S0034-5288(13)00224-5.

Sun Y.Y., E.D. Ellen, J.J. van der Poel, H.K. Parmentier, P. Bijma. Modelling of feather pecking behaviour in beak trimmed and non-beak trimmed crossbred laying hens: variance component and trait-based approach. Submitted to Poultry Science, May 2013

T. Berghof, H.K. Parmentier, A. Lammers. Transgenerational epigenetic effects on innate immunity in broilers, an underestimated field to be explored. In press, Poultry Science 2013

T.V.L. Berghof, H.T.L. Lai, A. Lammers, G. de Vries Reilingh, M.G.B. Nieuwland, A.J.A. Aarnink, H.K. Parmentier. Localization and (semi-) quantification of fluorescent beads of two sizes in chicken over time after simultaneous intratracheal and cloacal administration. Poultry Science 92: 1186-1194, 2013.

Wang Y, Brahmakshatriya V, Lupiani B, Reddy S, Okimoto R, Li X, Chiang H, Zhou H. 2012. Associations of chicken Mx1 polymorphism with antiviral responses in avian influenza virus infected embryos and broilers. Poult Sci. 91(12):3019-24. doi: 10.3382/ps.2012-02471.

Wideman, R. F., D. D. Rhoads, G. F. Erf, and N. B. Anthony. 2013. Pulmonary Hypertension Syndrome (PHS, Ascites Syndrome) in Broilers: A Review. Poult. Sci. 92:64-83.

Y. Sun, E.D. Ellen, H.K. Parmentier, J.J. van der Poel. Genetic parameters of natural antibody isotypes and survival analysis in beak trimmed and non-beak trimmed crossbred laying hens. In press, Poultry Science 2013.

Y. Sun, F. Biscarini, H. Bovenhuis, H.K. Parmentier, J.J. van der Poel. Genetic parameters and across-line SNP associations differ for natural antibody isotypes IgM and IgG in laying hens. Animal Genetics: In press. DOI: 10.1111/age.12014.

Zhang, H. F. Guo, H. Zhou and G. Zhu. 2012. Transcriptome Analysis Reveals Unique Metabolic Features in the Cryptosporidium parvum Oocysts Associated with Environmental Survival and Stresses. BMC Genomics.2012, 13:647.

ABSTRACTS & PROCEEDINGS

A. L. Ballou, R. Qiu, R. A. Ali, W. J. Croom, and M. D. Koci. Direct fed microbial supplementation affects host immune function and energy consumption. May 2013. Experimental Biology 2013. Boston, MA.

Abernathy J, X. Li, X. Jia, C. L. Swaggerty, M. H. Kogut, I. Pevzner, K. Drake, H. Zhou. 2013. A systems biology approach using Dynamic Bayesian Networks reveals bio-signatures of broiler chicken bursa response to Campylobacter jejuni inoculation. Plant & Animal Genome XXI, San Diego, CA.

Barrios MA, Jordan BJ, and Beckstead RB. (2013) Sperm-mediated gene transfer in chicken using a dehydration/rehydration protocol. Southeastern Society for Developmental Biology Meeting.

Beckstead RB and Jordan BJ. (2012) New methods to produce transgenic chickens. 109th Annual Meeting of Southern Association of Agricultural Scientists

Bed'Hom B., Fulton J., Juul-Madsen H., and Chazara O. 2013. Large scale analysis of MHC variability in chicken using a dedicated SNP panel. 10th International Veterinary Immunology Symposium - IVIS 2013, Milan, italy

Byrne, K. A.*, D. Falcon*, O. Alaamri*, R. L Dienglewicz, and G. F. Erf. 2013. Autoimmune vitiligo in Smyth line chickens is preceded by altered blood leukocyte profiles and responses to bacterial cell wall components. Poult. Sci. (E-Suppl. 1) 92:54.

Dalgaard, TS, Norup, LR, Pleidrup, J, Kjærup, RM, Wattrang, E & Juul-Madsen, HR 2013, 'Evauluation of an Easy Flow-Cytometric Assay for Detection of Specific Cell Mediated Immunity in Activated Whole Blood or PBMC from Chickens: SSI13-1108' Scandinavian Journal of Immunology, vol 77, nr. 4, s. 294-294.

Demeure, O, Hamzic, E, Juin, H, Naciri, M, Juul-Madsen, HR, Okimoto, R, Pinard-van der Laan, MH & Bed'Hom, B 2013, 'Investigation of Immune Response to Eimeria maxima in Broilers: SSI13-1106' Scandinavian Journal of Immunology, vol 77, nr. 4, s. 276-276.

Dong, L.*, R. L. Dienglewicz, and G. F. Erf. 2012. Divergent gene-expression profiles in 4-TBP-injected growing feathers of vitiligo-prone Smyth- and control line of chickens. Arkansas Biosciences Institute, Fall Research Symposium, Scientific Session II. P 12.

Erf, G. F. 2012. Biomedical research opportunities in the chicken model. Arkansas Biosciences Institute. Fall Research Symposium, Fayetteville, AR, Scientific Session I. P 2.

Erf, G. F., L. Dong*, F. Shi*, and R.L Dienglewicz. Multifactorial, non-communicable diseases: new insights from the Smyth line chicken model for autoimmune vitiligo. Poult. Sci. (E-Suppl. 1) 92:54.

F.W. van Ginkel, R.S. Gurjar, N. Orr, and S.L. Gulley. Ocular infectious bronchitis virus vaccination induces different immune responses in the mucosal and systemic immune compartment. International Congress of Immunology, Milan Italy, August 22-27, 2013.

Gadde, U., T. Rathinam, G. F. Erf, and H. D. Chapman, 2013. Acquisition of immunity to the protozoan parasite E. adenoeides in turkey poults and cellular responses to infection. Poult. Sci. (E-Suppl. 1) 92:110.

Gallardo, R. Characterization of the immune response and immunosuppression in chickens challenged with very virulent infectious bursal disease virus reassortants. AVMA American Association of Avian Pathologists (AAAP) annual meeting. Chicago, IL, July 2013.

Gregory D., M. Golding, and H. Zhou. 2013. Lentivirus-Mediated RNAi Knockdown of Chicken ATF3 and MYD88 genes in the HD-11 Cell Line. Proc. Plant & Animal Genome XXI, San Diego, CA.
H. Zhou, Y. Wang, S.J. Lamont, P. Ross. 2013. Re-annotation of Chicken Genome using RNA-seq Data. 102th Annual Poultry Science meeting, San Diego, CA

H. Zhou. Abernathy J, X. Li, X. Jia, C. L. Swaggerty, M. H. Kogut, I. Pevzner, K. Drake. 2013. Systems biology analysis of the ceca and bursa revealed unique innate immune responses to Campylobacter jejuni in two genetically distinct lines of chickens has been selected for a poster presentation. American Association of Immunology Meeting, Honolulu, HI

Huff, S. and G. F. Erf. 2013. Autoimmune vitiligo in the Smyth line chicken model: altered immune cell profiles in spleens from hens without active vitiligo lesions. Annual Biomedical Research Conference for Minority Students. Nov 16, 2013.

J. Rojas-­Amortegui. 2013. Comparison of a BAC-­based Marek’s Disease Virus, Strain CVI988 that has reverted to virulence to its parental vaccine strain. 85th NECAD, Sept. 18, 2013.

J.E. Fulton, J. Arango, M. Koci, and C.M. Ashwell. Variation in the MX gene in commercial egg layer elite lines. September 2013. 8th European Symposium on Poultry Genetics. Venice, Italy.

Jordan BJ, Stark MR, Beckstead RB. (2012) Novel method of producing chimeric chicks using piggyBac and JetPEI, International Poultry Scientific Forum

Jordan BJ*, Stark MR, Stark MR, and Beckstead RB. (2012) Utilizing piggyBac in transgenic chick strategies. Annual Meeting of the Poultry Science Association

Juul-Madsen, HR, Norup, LR, Sørensen, P & Dalgaard, TS 2013, 'Ontogenic Development of Lymphocyte Subsets in Two Selected Chicken Lines that Differ in Mannose-Binding Lectin (MBL) Serum Concentration Under Conventional Rearing: SSI13-1030' Scandinavian Journal of Immunology, vol 77, nr. 4, s. 268-268.

Kjærup R. M., Dalgaard T.S., Norup L.R. Goti R.M., Miller M.M., and Juul-Madsen H.R. Effect of polymorphism in chicken mannose-binding lectin promoter on the transcription efficiency. 12th Avian Immunology Research Group Meeting 28 – 31. August 2012, Edinburgh, UK.

Kjærup R.M., Dalgaard T.S., Norup L.R., and Juul-Madsen H.R. Polymorphism in the chicken Mannose-Binding Lectin 2 gene. Annual Meeting in Danish Society of Immunology, 24th May Aarhus, Denmark.

Kjærup, RM, Dalgaard, TS, Norup, LR, Sørensen P & Juul-Madsen, HR 2013, ’Can Vaccines be improved in Chickens by Adding Mannose-Bonding Lectin (MBL) Ligands?: SSI13-1101’ Scandinavian Journal of Immunology, vol 77, nr. 4, s. 320-320.

Krishnamoorthy, S., A. Al-Rubaye, S. Dey, K. Al-Zahrani, G. F. Erf, R. F. Wideman, N.B. Anthony, and D. Rhoads. 2012. Pulmonary arterial hypertension in the chicken: genetic similarities to humans. Arkansas Biosciences Institute, Fall Research Symposium, Scientific Session II. P 33.

Li J., Q. Li, R. Li, L. Li, Y. Wang, V. Brahmakshatriya, B. Lupiani, S. Reddy, X. Hu, S. Lamont, S. Hu, H. Zhou and N. Li. 2013. Single base resolution DNA methylome between avian influenza virus resistant and susceptible chickens. Plant & Animal Genome XXI, San Diego, CA.

Miller M. M., C. Robinson, J. Abernathy, R. M. Goto, H. Zhou and M. E. Delany. 2013. FISH and Trisomy Mapping Locate Olfactory Receptor and CD163 Genes on GGA16. Plant & Animal Genome XXI, San Diego, CA.

Milonczyk, A. and M. E. Berres (2012) Genetic modification of chickens to confer resistance to avian influenza. Introductory Biology 152 Undergraduate Research Symposium. University of Wisconsin – Madison

N. Siano, S. Nath Neerukonda, S. P. Golovan, M. S. Parcells. 2013. Pro-­tumorigenic reprogramming of energy metabolism by Marek’s disease virus (MDV) in T-­cell lymphomas. 85th NECAD, Sept. 18, 2013.

Norup, LR, Dalgaard, TS, Pleidrup, J, Schou, TW, Permin, A, Fink, DR, Jungersen, G & Juul-Madsen, HR 2013, 'Presence of Recently Activated B Lymphocytes in Chicken Gut Associated Lymphoid Tissue after an Ascaridia galli Infection: SSI13-1110' Scandinavian Journal of Immunology, vol 77, nr. 4, s. 283-283.

Payne J. and Beckstead RB. (2013) MACS sorting as a means of isolating primordial germ cells from stage X embryos. Southeastern Society for Developmental Biology Meeting.

Pleidrup A. J., Norup L.R., Dalgaard T.S., Kaiser P., Permin A., Schou T.W., Jungersen G., Sørensen P., and Juul-Madsen H.R. The effect of A. galli infection on vaccine-induced immunity to NDV in chickens. 12th Avian Immunology Research Group Meeting 28 – 31. August 2012, Edinburgh, UK.

Pleidrup J., Norup L.R., Dalgaard T.S., and Juul-Madsen H.R. Chicken immune responses after immunisation with Ascaridia galli antigens and protectivity after challenge infection 2012. Annual Meeting in Danish Society of Immunology, 24th May Aarhus, Denmark

R. A. Gallardo, H. Zhou, P. Woolcock, F. J. Hoerr. 2013. Characterization of the Immune Response and Immunosuppression in Commercial Chickens Challenged with Very Virulent Infectious Bursal Disease Virus Reassortants. American Association of Avian Pathologists, Chicago, IL.

R. Gurjar, S.L. Gulley, and F.W, van Ginkel. 2012. T Cell Response to Ark-type IBV in White Leghorns. Phi Zeta Research Emphasis Day, November 7, Auburn AL.

R.M. Johnson, S.L. Gulley, H. Toro, and F.W. van Ginkel. 2012. IBV Antibody and S1 Spike Protein Dominant B cell Epitopes Induced After Ocular Immunization with Ad4-S1. Phi Zeta Research Emphasis Day, November 7, Auburn, AL.

R.S. Gurjar, S.L. Gulley, and F.W. van Ginkel. Induction of interferon gamma and cytotoxic responses by an Ark-type infectious bronchitis virus vaccine in the mucosal and systemic immune compartments. GSC Research Forum & Symposium, February 26-28, 2013, Auburn AL.

R.S. Gurjar, S.L. Gulley, and F.W. van Ginkel. Induction of interferon gamma and cytotoxic responses by an Ark-type infectious bronchitis virus vaccine in the mucosal and systemic immune compartments. Research week, April 2-4, 2013, Auburn AL.

Rhoads, D. D., S. Krishnamoorthy, A. Al-Rubaye S. Dey, K. Al-Zahrani, G. F. Erf, .R. F. Wideman, N. B. Anthony. 2013. Mapping ascites QTLs in broilers. Plant and Animal Genomics :W642

S. Nath Neerukonda, S. P. Golovan, and M. S. Parcells. 2013. Targeted transcriptome analysis of immune signatures in the chickens in†ovo† vaccinated with bivalent HVT/SB-­1. 85th NECAD, Sept. 18, 2013.

Sorrick, J.*, R. L. Dienglewicz, and G. F. Erf. 2013. Uveitis and blindness in Smyth line chickens with autoimmune vitiligo: immunopathology associated with melanocyte loss in the eye. Pigment Cell & Melanoma Res. 26:769.

Swaggerty, H.I. Chiang, H. Zhou M. H. Kogut. 2013. Concurrent analyses of host-pathogen transcriptomes in avian polymorphonuclear cells following exposure to Salmonella enterica serovar Typhimurium. American Association of Immunology Meeting, Honolulu, HI

T.H. Kim, H. Zhou. 2013. Chicken IRF7 over-expressed and knock-downed HD11 cell line establishment applying piggyBac transposon vector system. IX Transgenic Animal Research Conference, Tahoe, CA.

T.H. Kim, H. Zhou. 2013. Establish Overexpressed and Knock-down IRF7 Chicken HD11 Cell Line using PiggyBac Transposon System.102th Annual Poultry Science meeting, San Diego, CA

Taylor, R. L., Jr., T. A. Burks, P. B. Siegel, and C. M. Ashwell. 2012. Temporal and treatment changes in embryonic bursal gene expression after testosterone exposure in high and low antibody lines. Poult. Sci. 91(Suppl. 1):29

U. Katneni, M.S. Parcells. 2013. Development of a Targeted Array to Assess Chicken Innate Signaling and Immune Patterning in Response to Marek’s Disease Vaccination. 85th NECAD, Sept. 18, 2013.

Ulrich-Lynge S., Dalgaard T.S., Norup L.R., Olsen J.E., and Juul-Madsen H.R. The binding ability of purified chicken Mannose-Binding Lectin (MBL) to Salmonella enterica serotype B, C1, and D. 12th Avian Immunology Research Group Meeting 28 – 31. August 2012, Edinburgh, UK.

Ulrich-Lynge, SL, Dalgaard, TS, Norup, LR, Olsen, JE & Juul-Madsen, HR 2013, 'Colonization Resistance and Immunological Differences in Response to An Experimental Salmonella Infection between Two Chicken Lines Selectively Bred for High or Low Concentration of Mannonse-Binding Lectin: SSI13-1018' Scandinavian Journal of Immunology, vol 77, nr. 4, s. 274-274.

W. Peters, H.M. Dong, P. Kumar, V. Arumugaswami, P. Tavlarides-­Hontz, M. S. Parcells. 2013. The Effect of Mutations in the Meq Oncoprotein of Marek's Disease Virus (MDV) on Lymphoma Composition. 85th NECAD, Sept. 18, 2013.

Wang Y, J. Li, Q. Li, R. Li, X. Hu, N. Li, S. Hu, B. Lupiani, S. Reddy, S. Lamont, H. Zhou. 2013. Effects of Avian Influenza Virus infection on the Transcriptome and the DNA Methylome in Two Genetically Distinct Chicken Lines using Next Generation Sequencing. Plant & Animal Genome XXI, San Diego, CA.

Wang, Y., Li, J., Li, Q., Hu, X., Li, N. Hu, S., Brahmakshatriy, V., Lupiani, B., Reddy, S., Lamont, S.J., and Zhou, H. 2013. Effects of avian influenza virus infection on the transcriptome and the DNA methylome in two genetically distinct chicken lines using next generation sequencing. Plant & Animal Genome XXI, January 2013, San Diego, CA

Wang, Y., Lupiani, B., Reddy, S., Wang, H., Chen, R., Lamont, S.J., and Zhou, H. 2013. Lung transcriptome following avian influenza virus infection in two genetically distinct chicken inbred lines using RNA-seq. Epigenetics Conference, June 2013, Japan

Wattrang E., Kjærup R. M., Norup L.R., Juul-Madsen H.R., and Dalgaard T.S. (2013). Degranulation of chicken cytotoxic T-cells during infectious bronchitis virus infection, 10th International Veterinary Immunology Symposium - IVIS, Milan, Italy

Wattrang E., Norup L.R., Juul-Madsen H.R. Dalgaard T.S., Preliminary characterisation of CD107a and CD57 as potential activation markers of chicken cytotoxic T-cells. 12th Avian Immunology Research Group Meeting 28 – 31. August 2012, Edinburgh, UK.

Y.O. Fasina, S.L. Gulley, and F.W. van Ginkel. 2012. Flow Cytometric Analysis of Proliferative Responses of Chicken Peripheral Blood Mononuclear Cells Following Concanavalin A Stimulation. Phi Zeta Research Emphasis Day, November 7, Auburn AL.

Zavelo. A.E., Schmidt, C.J., Rothschild, M.F., Persia, M.E., Lamont, S.J., and Ashwell, C.M. 2013. Major histocompatibility complex diversity in local Ugandan birds. Proc. Poultry Sci. Ann. Mtg. San Diego, CA

Zhou, H.J., Wang, Y., Lamont, S.J., and Ross, P. 2013. Re-annotation of chicken genome using RNA-seq data. Proc. Poultry Sci. Ann. Mtg. San Diego, CA

04/14/2014

05/01/2016

Refereed Journals

1. V. A. Meliopoulos, S. A. Marvin, P. Freiden, L. A. Moser, P. Nighot, R. Ali, A. Blikslager, M. Reddivari, R. J. Heath, M. D. Koci, S. Schultz-Cherry. Oral administration of astrovirus capsid protein is sufficient to induce acute diarrhea. mBio. Sumbitted. 2015.


2. A. L. Ballou, R. A. Ali, M. A. Mendoza, J. C. Ellis, H. M. Hassan, W. J. Croom, and M. D. Koci. Development of the chick microbiome: How early exposure influences future microbial diversity. Frontiers Veterinary Science. Submitted. 2015.


3. B. Troxell, N. Petri, C. Daron, R. Pereira, M. Mendoza, H. M. Hassan, M. D. Koci. The body temperature of poultry contributes to the control of systemic invasion through reducing expression of SPI-1 genes in Salmonella enterica serovars Typhimurium and Enteritidis. Applied and Environmental Microbiology. In Press. 2015.


4. Kim, T.H, H. Zhou. 2015. Functional Analysis of Chicken IRF7 in Response to dsRNA Analog Poly(I:C) by Integrating Overexpression and Knockdown: 10.1371/journal.pone.0133450


5. Schmid M. et al. H. Zhou. 2015.Third Report on Chicken Genes and Chromosomes Cytogenet Genome Res 145:78-179 (DOI:10.1159/000430927)


6. Leif, A. et al., The FAANG Consortium. 2015. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology 16:57. DOI: 10.1186/s13059-015-0622-4


7. Shi S, Shen Y, Zhao Z, Hou Z, Yang Y, Zhou H, Zou J, Guo Y. 2014. Integrative analysis of transcriptomic and metabolomic profiling of ascites syndrome in broiler chickens induced by low temperature. Mol Biosyst. 10(11):2984-93. doi: 10.1039/c4mb00360h.


8. †Luo, J., Carrillo, J.A., Menendez, K.R., Tablante, N.L., Zhao, K., and *Song, J. 2014 Transcriptome analysis reveals an activation of MHC-I and MHC-II pathways in chicken trachea immunized with infectious laryngotracheitis virus vaccine. Poultry Science. 10.3382/ps.2013-03624.


9. Shang, S., Xie, Q., Duan, J.R., Ernst, C., Fulton, J.E., O’Sullivan, N., Song, J. Zhang, H. 2014. Host genetic resistance to Marek’s disease sustains HVT protective efficacy comparable to CVI988/Rispens in both experimental and commercial lines of chickens. Vaccine. 02/2014; DOI:10.1016/j.vaccine.2014.01.092.


10. Du, J.l., Yuan, Z.F., Ma, Z.W., Song, J., Xie, X.L., Chen, Y.L. 2014. KEGG-PCA: Kyoto Encyclopedia of Genes and Genomes-based pathway correlation analysis using Principal Component Analysis method. Molecular BioSystem, 2014, DOI: 10.1039/C4MB00287C, Paper.


11. †Mitra, A., Luo, J., He, Y., Gu, Y., Zhang, H. Zhao, K., Cui, K. and *Song, J. 2015 Histone modifications induced by MDV infection at early cytolytic and latency phases. BMC Genomics 13: 557. DOI 10.1186/s12864-015-1492-6.


12. José A. C., He, Y., Luo, J., Menendez, K.R., Tablante, T. L., Zhao, K., Paulson , J.N., Li, B., and *Song, J. 2015 Methylome Analysis in Chickens Immunized with Infectious


13. He Y., Ding, Y., Zhan, F., Zhang, H., Hu, G., Zhao, K., Han, B., Yang, N., Mao, L., *Song, J., 2015. The conservation and signatures of lincRNAs in Marek's disease of chicken. Scientific Reports 5, 15184; doi: 10.1038/srep15184


14. Lian, L., Li, X., Zhao, C., Han, B., Qu, L., Song, J., Liu, C., and Yang, N. Chicken gga-miR-181a targets MYBL1 and shows an inhibitory effect on proliferation of Marek’s disease virus-transformed lymphoid cell line Poultry Science. (Accepted)


15. He Y., José A. C, Luo, J., Ding, Y., Tian, F., *Song, J., 2014. Genome-wide mapping of DNase I hypersensitive sites and association analysis with gene expression in MSB1 cells. Front. Genet. | doi: 10.3389/fgene.2014.00308.


16. Galvan,S.C., Carranc, A.G., Song J., and Félix RT., Epigenetics and animal virus infections. Front. Genet., 04 March 2015 | doi: 10.3389/fgene.2015.00048.


17. Ma, M., Lin,R., Carrillo, J., Bhutani, M., Pathak, A., Ren, H., Li,Y., Song, J., Mao, L. ΔDNMT3B4-del Contributes to Aberrant DNA Methylation Patterns in Lung Tumorigenesis. EBioMedicine (2015), doi: 10.1016/j.ebiom.2015.09.002


18. Nguyen-Phuc, Hoa, Fulton, Janet E., and M. E. Berres. 2015. Genetic variation of Major Histocompatibility Complex (MHC) in wild Red JungleFowl (Gallus gallus). Submitted to Poultry Science.


19. Fulton JE, Lund AR, McCarron AM, Pinegar K, Korver D, Classen H, Aggrey S, Utterbach C,Anthony NB, and M. E. Berres. 2015. MHC Variability in Heritage chicken breeds. Accepted in Poultry Science.


20. Nguyen-Phuc, Hoa and M. E. Berres. 2015. Spatial genetic structure of wild Red Junglefowl (Gallus gallus) in South Central Vietnam. Submitted to Molecular Ecology.


21. Nguyen-Phuc, Hoa and M. E. Berres. 2015. Spatial dependence models and correlation of neutral genetic variation in wild Red Junglefowl (Gallus gallus). Submitted to Landscape Ecology.


22. Byrne, K. A.*, D. M. Falcon*, and G. F. Erf. 2015. Novel approach to simultaneously monitor local and systemic in vivo effects of varying doses of intradermally injected LPS. J. Immunol. 193:146.11.


23. Falcon, D. M.*, R. L. Dienglewicz, K. A. Byrne*, and G. F. Erf. 2015. Ex vivo killing of primary melanocytes by syngeneic mononuclear cells from active, autoimmune vitiligo lesions in Smyth chickens. J. Immunol. 193:115.12.


24. Lyle, C. S.*, K. A. Byrne*, D. M. Falcon*, R. L. Dienglewicz*, HM. Jang, Z. Aguilar, and G. F. Erf. 2015. Immunostimulatory activity of indium phosphide quantum dots in vitro and in vivo. J. Immunol. 193:73.13 (in press).


25. Erf, G. F., O. Alaamri*, H. Jang, K. A. Byrne*, D. M. Falcon*, Z. Aguilar, and R. L. Dienglewicz. 2015. Simultaneous monitoring of in vivo humoral and cellular immune responses in the avian model. J. Immunol. 193:73.8.


26. Erf, G. F., HM Jang, K. A. Byrne*, O Alaamri*, C. S. Lyle*, D. M. Falcon*, and R.L. Dienglewicz. 2015. Differences in cellular and humoral primary and secondary immune responses to protein antigen administered with or without adjuvant. Poult. Sci. (E. Suppl. 1) 94: (in press).


27. Byrne, K. A.* and G. F. Erf. 2015 Tissue and blood responses to peptidoglycan injection into chicken dermal tissue. Poult. Sci. (E. Suppl. 1) 94: (in press).


28. Huett, W.*, Byrne, K. A. *, Sorrick, J.*, and G. F. Erf. 2015. Uveitis and blindness in Smyth line chickens with autoimmune vitiligo: expression of cytokine- and melanogenesis-related-genes in eyes before and during loss of choroidal melanocytes. Pigment Cell & Melanoma Res. 28 (in press).


29. Falcon, D. M.*, R. L. Dienglewicz, and G. F. Erf. 2015. Monitoring of leukocyte infiltration responses to melanocytes injected into growing feathers of Smyth line chickens with autoimmune vitiligo. Pigment Cell & Melanoma Res. 28 (in press).


30. Falcon, D. M.*, G. F. Erf and S. Dridi. 2015. Reduced expression of the RNase Dicer in primary melanocytes obtained from vitiligo-prone Smyth line chickens. Pigment Cell & Melanoma Res. 28 (in press).


31. Gallardo R.A., Carrasco-Medanic R., Zhou H., Lyu S., Wang Y., Woolcock P.R., Hoerr F.J. Effects of challenge with very virulent infectious bursal disease virus reassortants in commercial chickens. Avian Dis, 58(4): 579-86.


32. Gallardo R.A., Aleuy O.A., M. Pitesky, G. Senties-Cue, A. Abdelnabi, P.R. Woolcock, M. R. Hauck, H. Toro. Variability Assessment of California Infectious Bronchitis Virus Variants. Avian Dis. Submitted for publication.


33. van Ginkel, F.W., J. Padgett, G. Martinez-Romero, M.S. Miller, K. Joiner, S.L. Gulley. 2015. Age-dependent immune responses and immune protection after avian coronavirus vaccination. Vaccine 33: 2655-2661.


34. Sun, H., Liu, P., Nolan, L.K., and Lamont, S.J. 2015. Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens. BMC Genomics 16:690 DOI 10.1186/s12864-015-1850-4.


35. Walugembe, M., Hsieh, J.C.F., Koszewski, N.J., Lamont, S.J., Rothschild, M.F., and Persia, M.E. 2015. Effects of dietary fiber on cecal short fatty acid and cecal microbiota of broiler and laying hen chicks. Poultry Sci. 94:2351–2359.


36. Kim, D. K., Lillehoj, H.S., Jang, S.I., Lee, S.H., Hong, Y.H., and Lamont, S.J. 2015. Genetically disparate Fayoumi chicken lines show different response to avian necrotic enteritis. J. Poultry Sci. doi.org/10.2141/jpsa.0140203.


37. Schmid, M., Smith, J., Burt, D.W., Aken, B.L., Antin, P.B. et al. 2015. Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res 145: 78-179.


38. Yitbarek A, Echeverry H, Munyaka P, and Rodriguez-Lecompte JC, 2015. Innate immune responses in chicken pullets fed probiotic and symbiotic. Poult. Sci. 94:1802-1811.


39. Waititu SM, Yitbarek A, Matini E, Echeverry H, Kiarie E, Rodriguez-Lecompte JC,. Nyachoti CM.            2014. Effect of supplementing direct-fed microbials on broiler performance, nutrient digestibilities, and immune responses. Poult. Sci. 93:625-635


40. Jing M, Munyaka P, Tactacan G, Rodriguez-Lecompte, JC, O K, and House JD. 2014. Performance,            serum biochemical responses and gene expression of intestinal folate transporters of young and older laying hens in response to dietary folic acid supplementation and challenge with Escherichia coli lipopolysaccharide. Poult. Sci. 93:122-131


41. A. van Knegsel, H. M. Hammon, U. Bernabucci, G. Bertoni, R.M. Bruckmaier, R. M. A. Goselink, J. J.Gross, B. Kuhla, C. C. Metges, H. K. Parmentier, E. Trevisi, A. Tröscher, A. M. van Vuuren. Metabolicadaptation during early lactation: key to cow health, longevity and a sustainable dairy production chain.: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resourches. CAB Review 9: doi:10.1079/PAVSNNR20149002, 2014.


42. F. Molist, E. van Eerden, H. K. Parmentier, J. Vuorenmaa. Effects of inclusion of hydrolyzed yeast on the immune response and performance of piglets after weaning. Animal Feed Science and Technology 195:136-141, 2014.


43. H. K. Parmentier, E. Harms, A. Lammers, M. G. B. Nieuwland. Age and genetic selection affect autoimmune profiles of chickens. Dev. Comp. Immunol. 47: 205-214, 2014.


44. J. O. Khobondo, M. G. B. Nieuwland, L. E. Webb, E. A. M. Bokkers, H. K. Parmentier. Natural (auto)antibodies in calves are affected by age and diet. Veterinary Quarterly 35: 64-75, 2015.


45. D. B. de Koning, E. P. W. C. Damen, M. G. B. Nieuwland, E. M. van Grevenhof, W. Hazeleger, B.Kemp, H. K. Parmentier. Association of natural (auto-) antibodies at an early age with osteochondrosis at slaughter in growing gilts. Livestock Science 176: 152-160, 2015.


46. T. V. L. Berghof, S. A. S. van der Klein, J. A. J. Arts, H. K. Parmentier, J. J. van der Poel, H. Bovenhuis. Genetic and non-genetic inheritance of natural antibodies binding keyhole limpet hemocyanin in a purebred chicken line. Plos One, e0131088, 2015.


47. A. Koppenol, E. Delezie, H. K. Parmentier, J. Buyse, N. Everaert. Limited evidence for transgenerational effects of maternal dietary supplementation with omega-3 fatty acids on immunity in broiler.Veterinary Journal 203: 244-249, 2015.


48. N. Mayasari, G. de Vries Reilingh, M. G. B. Nieuwland, G. J. Remmelink, H. K. Parmentier, B. Kemp,A. T. M. van Knegsel. Effect of maternal dry period length on colostrum immunoglobulin content, natural and specific antibodies titers and development of calves. J. Dairy Science 98: 3969-3979, 2015.


49. S. A. S. van der Klein, T. V. L. Berghof, J. A. J. Arts, H. K. Parmentier, J. J. van der Poel, H. Bovenhuis. Genetic relations between natural antibodies binding keyhole limpet hemocyanin and production traits in a purebred layer chicken line. Poultry Science 94: 875-882, 2015.


50. E. Wondmeneh, E. H. van der Waaij, H. K. Parmentier, B.J. Ducro, J. A. M. van Arendonk. High natural antibody titers of indigenous chickens are related with increased hazard in confinement. Poultry Science 94: 1493-1498, 2015.


51. B. de Klerk, B. Ducro, H. Heuven, I. den Uijl, J. van Arendonk, H. K. Parmentier, J. J. van der Poel. Phenotypic and genetic relationships of natural antibodies binding keyhole limpet hemocyanin in bovine plasma and milk. J. Dairy Science 98: 2746-2752, 2015.


52. M. Bao, H. Bovenhuis, M. G. B. Nieuwland, H. K. Parmentier, J. J. van der Poel. Genetic parameters of IgM and IgG antibodies binding autoantigens in healthy chickens. In press, Poultry Sci. 2015.


53. K Simon, De Vries Reilingh G and Lammers A. 2014. Development of ileal cytokine and immunoglobulin expression levels in response to early feeding in broilers and layers. Poultry Science. In press.


54. Banat G. R., Tkalcic S., Dzielawa J. A., Jackwood M. W., Saggese M. D., Yates L., Kopulos R.,Briles W. E., Collisson E. W. Association of the chicken MHC B haplotypes with resistance to avian coronavirus. Dev. Comp. Immunol. 2013;39:430-437.


55. Dawes M.E., Griggs L.M., Collisson E.W., Briles W.E., Drechsler Y. Dramatic differences in the response of macrophages from B2 and B19 MHC-defined haplotypes to interferon gamma and polyinosinic:polycytidylic acid stimulation. Poultry Science 2014 Vol 93: 830-838


56. Miller MM and Taylor, Jr.RL. Brief Review of the Chicken Major Histocompatibility Complex – the Genes, their Distribution on Chromosome 16 and their Contributions to Disease Resistance. Submitted.


57. Fulton JE, McCarron AE, Lund AR, Pinegar K, Wolc A, Chazara O, Bed’Hom B, Berres ME, Miller MM. A high density SNP panel reveals extensive diversity, frequent recombination and multiple recombination hotspots within the chicken major histocompatibility complex B region between BG2 to CD1A1. To be submitted in October 2015.


58. Miller, MM, Goto, RM, McPherson, M, Delgado MH, Dalton J, Warden C, Wu X, Hosomichi K, Delany ME, and Shiina T. FISH analysis and sequencing of the red jungle fowl MHC-Y region reveals multiple compartmentalized clusters of MHC class I-like, MHC class IIβ, c-type-lectin-like genes interspersed with repetitive elements. To be submitted in December 2015


59. Miller, MM, Goto, RM, Gugui, G., Bjorkman P. Nature of ligands bound byYF1*7.1. To be submitted in August 2016.


60. Taylor, R. L., Jr., J. L. Anderson, and S. C. Smith, 2014. Commentary on: Atherosclerosis-susceptible and atherosclerosis-resistant pigeon aortic cells express different genes in vivo. http://www.athero.org/commentaries/comm1188.asp


61. Taylor, R. L., Jr. 2015. Letter to the Editor – An incomplete story told by a single number. Poult. Sci. 94:1995-1996 doi:10.3382/ps/pev221


62. Taylor, R. L., Jr., Z. Medarova, and W. E. Briles. Immune effects of chicken non-Mhc alloantigens. Poult. Sci. 95: in press doi:10.3382/ps/pev331 (review)


63. Taylor, R. L., Jr. The future of poultry science research: Challenges as opportunities. AMENA, Asociación Mexicana de Especialistas en Nutrición Animal, Puerta Vallarta, Mexico in press


64. CAST (Long., J. H. Blackburn, A. Martin, F. Silversides, R. L. Taylor, Jr., and C. Youngs). The need for agricultural innovation to sustainably feed the world by 2050: Protecting food animal gene pools for future generations. in press


65. Miller, M. M., and R. L. Taylor, Jr. Brief review of the chicken major histocompatibility complex – the genes, their distribution on chromosome 16 and their contribution to disease resistance. (review)


66. Weathers, B., S. L. Branton, R. Jacob, E. D. Peebles, R. L. Taylor, Jr., and G. T. Pharr. Expression of the ephrin receptor B2 in the embryonic chicken bursa of Fabricius.

 

Book Chapters

2016. D. Koci and S. Schultz-Cherry. “Astrovirus”. Food Microbiology Series: Laboratory Models for Foodborne Infections. Ed. D. Liu. Springer Science. New York. 2016.

Presentations

1. Koci, M. Intestinal immunology and the role of enteric viruses in intestinal health. Zoetis Intestinal Health Seminar. North Carolina State University (NCSU), June 2015.


2. Koci, M No Theses Without the Feces. RTP180. Research Triangle Park, NC. June 2015.


3. Koci, M Resistance, Immunity and Vaccines: Lessons from our Feathered Friends. Triangle Immunology and Virology Interest Group. Research Triangle Park, NC. February 2015.


4. Koci, M Innovation in Action: Novel Research in Agriculture and Life Sciences. Stewards of the Future: the Future of Foods. Raleigh, NC. November 2014.


5. Koci, M The Future With or Without Anitbiotics. 41st Poultry Nutrition Conference. Raleigh NC.


6. Saelao, P., Y. Wang, D,A, Bunn, R. Gallardo, S.J. Lamont. Zhou, H. 2015. Transcriptome Response of Two Distinct Highly Inbred Lines to Combined Stressors of Newcastle Disease Virus and Heat. International Symposium on Animal Functional Genomics, Piacenza, Italy.


7. Herrmann, M. S. H. Zhou, R. Gallardo, D. Bunn, S. Lamont. 2015. Differential response of resistant and susceptible chicken lines to a lentogenic Newcastle Disease Virus strain. Global Alliance for Research on Avian Diseases (GARAD) Conference, UK.


8. Rowland, K., H. Zhou, R. Gallardo, D. Bunn, S. Lamont. 2015. Identifying genes and genetic markers associated with NDV resistance in chickens. Poultry Breeders Roundtable meeting, St Louis, MO.


9. Zhou, H., D,A, Bunn, R. Gallardo, S. J. Lamont, J. C.M. Dekkers, A. Muhairwa, P. Msoffe, B. Kayang, A. Naazie, G. Aning, C. J. Schmidt. 2015. Improving Food Security in Africa By Enhancing Resistance to Newcastle Disease and Heat Stress in Chickens: Genomics to Improve Poultry. Plant & Animal Genome XXIII, San Diego, CA.


10. Y. Wang, P. Saelao, D,A, Bunn, R. Gallardo, S.J. Lamont. Zhou, H. 2015. Transcriptome Analysis of Genetic Resistance to Heat Stress in Two Genetically Distinct Chicken Inbred Lines. Plant & Animal Genome XXIII, San Diego, CA.


11. Saelao, P. H. Zhou. 2015. Tissue-Specific Transcriptome Regulation through Histone Modifications in Chickens. Plant & Animal Genome XXIII, San Diego, CA. November 2014.


12. Giuffra , E., S. Foissac ,O. Madsen ,M. A.M. Groenen , R. Crooijmans , P. J. Ross , I. Korf ,H. Zhou. 2015. The Functional Annotation of Animal Genomes (FAANG) Initiative. Plant & Animal Genome XXIII, San Diego, CA.


13. Zhou H., Wang Y, N. Huefner, Lupiani B, Reddy SM, Lamont SJ. 2015. Systems Biology Analysis of Mechanism of Host Response to Avian Influenza Virus Infection in Two Genetically Distinct Chicken Inbred Lines. Plant & Animal Genome XXIII, San Diego, CA.


14. Kim, T.H, Y. Wang, Z. Zhao, S. J. Lamont, H. Zhou. 2015. RNA-Seq Based Genome-Wide Analysis of Genomic Imprinting in Chicken Lungs. Plant & Animal Genome XXIII, San Diego, CA.


15. Saelao, P., Y. Wang, A. Nazmi, D,A, Bunn, R. Gallardo, S.J. Lamont. Zhou, H. 2015. Transcriptional Analysis of Resistance to Newcastle Disease Virus Infection in Two Genetically Distinct Inbred Chicken Line. Plant & Animal Genome XXIII, San Diego, CA.


16. Gallardo R.A., M. Pitesky, B. Crossley. 2014. Understanding Variability of California Infectious Bronchitis Viral Strains. American Association of Avian Pathologists Annual Meeting. Denver, CO.


17. Gallardo R.A., H. Zhou, Y. Wang, K. Smith. 2015. Major Histocompatibility Complex and Genetic Resistance Towards Infectious Bronchitis Virus. American Association of Avian Pathologists Annual Meeting. Boston, MA.


18. C. Breedlove, A.M. Ghetas, S. Gulley, F.W. van Ginkel, K. Joiner, V.L. van Santen, H. Toro. Effects of Supplemental Fermentation Product of S. cerevisiae in Chicken Diets on Resistance against Infectious Bronchitis Virus. Southern Conference on Avian Diseases, Atlanta, GA, January 2015.


19. Miller, S.L. Gulley, and F.W. van Ginkel. Effects of vaccination on IBV-specific antibody production and avidity in chickens. Phi Zeta Research Emphasis Day. November 5, 2014, Auburn AL.


20. Elad O, Rodríguez-Lecompte JC, Sharif S, McKenna P. 2014. Effect of Folic Acid on the Expression of TLR2b, TLR4 and Igβ Genes in Chicken B cells, with or Without LPS Challenge. Avian Immunology Research Group (AIRG) meeting 2014, University of Guelph, ON, Canada July 16-19 2014 (Poster)


21. Rodríguez-Lecompte JC, Elad O, Yitbarek A, Sharif S, McKenna P. 2014. Effect of different levels of vitamin D active form 1,25 (OH)2 D3 on chicken B-Cells associated with avian innate immune responses. Avian Immunology Research Group (AIRG) meeting 2014, University of Guelph, ON, Canada July 16-19 2014 (Poster)


22. Alizadeh M, Rodriguez-Lecompte JC, Slominski BA. 2014. The effect of different formulation of yeast-derived products on growth performance, innate and humoral immunity in broiler chickens. The International Scientific Conference on Probiotics and Prebiotics – IPC2014, 24–26th June 2014, Budapest, Hungary (Oral presentation).


23. Rodríguez-Lecompte JC, Echeverry H, Yitbarek A, Parada M. 2014. Innate immune response of chicken macrophages to Escherichia coli derived-LPS and Propionibacterium acnes and granulosum challenge. 63rd Western Poultry Conference & XXXIX ANECA Joint Annual Meeting, Puerto Vallarta, Jalisco, Mexico April 2-5, 2014 (Oral presentation)


24. Drechsler Y: International Anatomy & Pathology meeting, Zagreb, Croatia, 2014. The role of CD8 T lymphocyte in virally associated protective immunity.


25. Drechsler Y: GARAD. London, UK 2015: RNA Sequencing Elucidates Large-Scale Temporal Dysregulation of Gene Expression in B19 versus B2 Haplotype Activated Macrophages WVPA, Capetwon, South Africa 2015.


26. Drechsler Y and Collisson EW: RNA sequencing shows significantly different gene expression of macrophages in B2 compared to B19 haplotype chickens


27. Collisson EW, Griggs LM, Drechsler Y: Macrophages are Key Players in B Haplotype Associated Enhanced Adaptive Immunity to Avian Influenza Virus.


28. Platform Report at NC-1170 - Advanced Technologies for the Genetic Improvement of Poultry and the NSRP-8, National Animal Genome Research Program held at XXII Plant and Animal Genome Meeting, San Diego, CA, January 10, 2015

 

Abstracts

1. V. A. Meliopoulos, S. A. Marvin, B. Sharp, P. Freiden, L. A. Moser, P. Nighot, R. Ali, A. Blikslager, M. Reddivari, R. J. Heath, M. D. Koci, and S. Schultz-Cherry. The Astrovirus Capsid Protein: A Novel Viral Enterotoxin That Increases Intestinal Barrier Permeability And Sodium Malabsorption In A Small Animal Model. July 2015. 34th Annual Meeting of the American Society for Virology. London ON, Canada.


2. B. Troxell, R. Ali, M. Mendoza, H. M. Hassan, and M. D. Koci. Growth at the Body Temperature of Poultry Inhibits the Function of the HilD Protein and Reduces Expression of SPI-1 Genes within Salmonella enterica serovar Typhimurium. May 2015. 115th General Meeting of the American Society for Microbiology. New Orleans, LA.


3. A. L. Ballou and M. D. Koci. Impact of Gut Microbiome Modulation on Gut Inflammation. March 2015. Experimental Biology 2015. Boston, MA.


4. A. L. Ballou, R. A. Ali, J. Croom, M. D. Koci. Where do probiotics live and work? January 2015. 2015 International Poultry Scientific Forum. Atlanta, GA.


5. Zhang, H., Xie, Q.M., Chang, S., Ernst, C.W. Black-Pykosz, A., He, Y., *Song J. 2014. Differential expression profiling of miRNAs between a Marek’s disease resistant and a susceptible line of chickens by deep sequencing. The 10th International Symposium on Marek’s Disease and Avian Herpes viruses. East Lansing, Michigan.


6. He, Y., Luo, J., Ding, Y., Zhang, H., Cheng, H., and *Song, J. 2014. LINCRNA Identification of Marek’s Disease in CD4+ T cells. The 10th International Symposium on Marek’s Disease and Avian Herpes viruses. East Lansing, Michigan.


7. He, Y., Luo, J., Ding, Y., Zhang, H., Tian, F., and *Song, J. 2014 Epigenetics pattern and Host-virus interaction. International Society Animal Genetics 2014 XiAn, China.


8. Ding, Y., He, YH., Carrillo, J., Zhang, HM., and *Song, J. Transcriptomic signatures of Marek’s disease in immune organs. Poultry Science Association Annual Meeting. Louisville, Kentucky, United States. July 27-30, 2015


9. Han, B , He, YH. Ding, Y. Zhang, L. Yang, N. and *Song, J. 2015 Identification of LincRNAs and their modeling of knockdown systems associated with chicken Marek’s disease. Poultry Science Association Annual Meeting. Louisville, Kentucky, United States. July 27-30, 2015


10. He, YH, Zhang, HM. and *Song, J. 2015 Differential transcriptome analysis of CD4+ T cells of chickens induced by Marek’s disease virus challenge. International Plant & Animal Genome XXIII. San Diego, CA, USA. January 10-14, 2015


11. He,YH, Zhang, HM. Taylor, RL. and *Song, J. 2015 DNA methylation patterns associated with the resistance of Marek's disease. Poultry Science Association Annual Meeting. Louisville, Kentucky, United States. July 27-30, 2015


12. Herrmann, M.S., Gallardo, R., Bunn, D.A., Zhou, H., and Lamont, S.J. 2015. Differential response of resistant and susceptible chicken lines to a Newcastle Disease Virus vaccine strain. Proc. International Symposium on Vaccines Against Antigenically Variable Viruses (VAAVV), November 5-8, 2015; Ames, IA.


13. Herrmann, M.S., Gallardo, R., Bunn, D.A., Zhou, H., and Lamont, S.J. 2015. Differential response of resistant and susceptible chicken lines to a lentogenic Newcastle Disease Virus strain. Proc. Global Alliance for Research on Avian Diseases, June 28-July 1, 2015; London, England.


14. Herrmann, M.S., Gallardo, R., Bunn, D.A., Zhou, H., and Lamont, S.J. 2015. Differential response of resistant and susceptible chicken lines to a lentogenic Newcastle Disease Virus strain. Proc. National Breeders Roundtable, May 7-8, 2015; St. Louis, MO.


15. Herrmann, M.S., Gallardo, R., Bunn, D.A., Zhou, H., and Lamont, S.J. 2015. Differential response of resistant and susceptible chicken lines to a lentogenic Newcastle Disease Virus strain. Proc.2nd Graduate and Professional Research Conference, April 2, 2015; Ames, IA.


16. Rowland, K., Zhou, H., Gallardo, R., Bunn, D., Lamont, S. 2015. Identifying genes and genetic markers for NDV resistance in commercial layer chickens. Proc. 9th European Symposium on Poultry Genetics, June 16-18, Tuusula, Finland.


17. Rowland, K., Zhou, H., Gallardo, R., Bunn, D., Lamont, S. 2015. Identifying genes and genetic markers associated with NDV resistance in chickens. Proc. Poultry Breeders Roundtable, May 7-8, St. Louis, MO.


18. Rowland, K., Zhou, H., Gallardo, R., Bunn, D., Lamont, S. 2015. Identifying host genes and genetic markers for antibody production to Newcastle Disease Virus (NDV) vaccine strain in commercial layer chickens. Proc. Vaccines Against Antigenically Variable Viruses, November 5-8, Ames, IA.


19. Casebere, K., Kaiser, M., and Lamont, S. 2015. Bacterial component induced inflammatory response in roosters from diverse genetic lines. Animal Science Leaflet R2998, Iowa State University, Ames IA USA


20. Herrmann, M.S., Gallardo, R., Bunn, D.A., Zhou, H., and Lamont, S.J. 2015. Differential response of resistant and susceptible chicken lines to a Newcastle Disease Virus vaccine strain. Proc. International Symposium on Vaccines Against Antigenically Variable Viruses (VAAVV), November 5-8, 2015; Ames, IA.


21. Herrmann, M.S., Gallardo, R., Bunn, D.A., Zhou, H., and Lamont, S.J. 2015. Differential response of resistant and susceptible chicken lines to a lentogenic Newcastle Disease Virus strain. Proc. Global Alliance for Research on Avian Diseases, June 28-July 1, 2015; London, England.


22. Herrmann, M.S., Gallardo, R., Bunn, D.A., Zhou, H., and Lamont, S.J. 2015. Differential response of resistant and susceptible chicken lines to a lentogenic Newcastle Disease Virus strain. Proc. National Breeders Roundtable, May 7-8, 2015; St. Louis, MO.


23. Herrmann, M.S., Gallardo, R., Bunn, D.A., Zhou, H., and Lamont, S.J. 2015. Differential response of resistant and susceptible chicken lines to a lentogenic Newcastle Disease Virus strain. Proc.2nd Graduate and Professional Research Conference, April 2, 2015; Ames, IA.


24. Hsieh J.C., Jernigan R.L., Lamont S.J. 2015. The Structure of Newcastle Disease Virus Fusion Protein Bound to Chicken Protein Disulfide Isomerase A3 Suggests a Molecular Target for New Therapies. Proc. National Breeders Roundtable; 2015 May 7-8; St. Louis


25. MO. Hsieh J.C., Walugembe M., Koszewski N.J., Lamont S.J., Persia M.E., Rothschild M.F. 2015. Whole Genome Shotgun Sequencing Metagenomics Analysis for the “Common” Scientist – Poultry. International Plant & Animal Genome Conference XXIII; 2015 Jan 10-14; San Diego, CA.\


26. Rowland, K., Zhou, H., Gallardo, R., Bunn, D., Lamont, S. 2015. Identifying genes and genetic markers for NDV resistance in commercial layer chickens. Proc. 9th European Symposium on Poultry Genetics, June 16-18, Tuusula, Finland.


27. Rowland, K., Zhou, H., Gallardo, R., Bunn, D., Lamont, S. 2015. Identifying genes and genetic markers associated with NDV resistance in chickens. Proc. Poultry Breeders Roundtable, May 7-8, St. Louis, MO.


28. Rowland, K., Zhou, H., Gallardo, R., Bunn, D., Lamont, S. 2015. Identifying host genes and genetic markers for antibody production to Newcastle Disease Virus (NDV) vaccine strain in commercial layer chickens. Proc. Vaccines Against Antigenically Variable Viruses, November 5-8, Ames, IA.


29. Sauer, Z., Kaiser, M., and Lamont, S.J. 2015. RNA expression levels of 2 immunologically related genes upon lipopolysaccharide stimulation amongst 3 distinct genetic lines of chicken. Animal Science Leaflet R2999, Iowa State University, Ames IA USA


30. Sun, H., Liu, P., Nolan, L.K., and Lamont, S.J. 2015. Combination analysis of three primary lymphoid tissues in response to extraintestinal pathogenic Escherichia coli (ExPEC) infection. Next generation sequencing USA congress and single cell analysis USA congress: 2015 Oct 27-28; Boston, USA.


31. Walugembe M., Hsieh J.C., Koszewski N.J., Lamont S.J., Persia M.E., Rothschild M.F. 2015. Metagenomics Analysis of Broiler and Layer Chicks Cecal Content from High Fiber Diets - Poultry. International Plant & Animal Genome Conference XXIII; 2015 Jan 10-14; San Diego, CA.


32. Elad O, Rodriguez-Lecompte JC, Sharif S and McKenna P. 2015. Epigenetic characterization of the effect of folic acid on chicken B cell receptors methylation patterns and mRNA expression. Poult. Sci.9(E-suppl.1)4:29


33. Rodriguez-Lecompte JC, Elad O, Reyes J, Yitbarek A, Sharif S and McKenna P. 2015. Vitamin D active form 1,25-(OH)2D3 supplementation on toll-like receptors, BCR, MHC II, cytokines and chemokine profile in chicken B cells. Poult. Sci. 94 (E-suppl.1):64


34. He, Y., H. Zhang, R. L. Taylor, Jr., and J. Song. 2015. DNA methylation patterns associated with the resistance of Marek's disease. Poult. Sci. 94(E-Suppl. 1):50


35. Taylor, R. L., Jr., S. J. Nolin, Z. S. Lowman, A. E. Zavelo, and C. M. Ashwell. 2015. Antibody kinetics differ among Mhc-identical recombinant congenic strains. Poult. Sci. 94(E-Suppl. 1):64

Thesis/Dissertation Completed:

1. Kallie Sullivan. Honors (POSC) Innate and adaptive anti-tumor immunity in naïve and tumor-bearing Arkansas Rous sarcoma Regressor and Progressor chickens” (Sp 2015). University of Arkansas. G.F. Erf, mentor.


2. Innate patterning of the immune response to marek's disease Virus (mdv) during pathogenesis and vaccination, Upendra k.Katneni, august 2015, phd


3. Transcriptional analysis of the unfolded protein Response (upr) and lymphoma microenvironment during Marek’s disease virus (mdv) infection, sabarinath neerukonda, August 2015, MS

02/16/2017

02/20/2018

113 total publications from NE-1334 Project participants 2016-2017

 *=17 Cooperative publications among 2 or more project participants

*Da Silva A. P., Hauck R., H. Zhou, and R. A. Gallardo. 2017. Understanding immune resistance to infectious bronchitis using major histocompatibility complex chicken lines. Avian Dis. 61(3): 358-365.

*Deist M. S., R. A. Gallardo, D. A. Bunn, T. R. Kelly, J. C. M. Dekkers, H. Zhou, and S. J. Lamont. 2017. Novel mechanisms revealed in the trachea transcriptome of resistant and susceptible chicken lines following infection with Newcastle disease virus. Clin. Vacc. Immunol. (In Press) http://cvi.asm.org/content/24/5/e00027-17.short

*Deist M.S., R. A. Gallardo, D. A. Bunn, J. C. M. Dekkers, H. Zhou, and S. J. Lamont. 2017. Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome. BMC Genomics. (In press)

*Deist, H., R. Gallardo, D. Bunn, T. Kelly, J. Dekkers, H. Zhou, and S. Lamont. 2017. Novel mechanisms revealed in the trachea transcriptome of resistant and susceptible chicken lines following infection with Newcastle disease virus. Clin Vaccine Immunol 24(5). pii: e00027-17. doi: 10.1128/CVI.00027-17.

*Deist, M. S., R. A. Gallardo, D. A. Bunn, T. R. Kelly, J. C. M. Dekkers, H. Zhou, and S. J. Lamont. 2017. Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome. BMC Genomics. in press

*Deist, M. S., R. A. Gallardo, D. A. Bunn, T. R. Kelly, J. C. M. Dekkers, H. Zhou, and S. J. Lamont. 2017. Novel mechanisms revealed in the trachea transcriptome of resistant and susceptible chicken lines following infection with Newcastle disease virus. Clin. Vaccine Immunol. 24:e00027-17. doi:10.1128/CVI.00027-17.

*Dunn, J.R., S. M. Reddy, M. Niikura, V. Nair, J.E. Fulton and H.H. Cheng. 2017.  Evaluation and identification of Marek’s disease virus BAC clones as standardized reagents for research.  Avian Dis. 61:107-114.

*Fulton, J.E., A.M. McCarron, A.R. Lund, K.N. Pinegar, A. Wolc, O. Chazara, B. Bed’Hom, M. E. Berres and M.M. Miller, 2016.  A high-density SNP panel reveals extensive diversity, frequent recombination and multiple recombination hotspots within the chicken major histocompatibility complex B region between BG2 and CD1A1.  Genetics Sel. Evol. 48:1

*Fulton, J.E., M. E. Berres, J. Kantanen and M. Honkatukia. 2017.  MHC-B variability within the Finnish Landrace chicken conservation program.  Poult. Sci. in press

*Irizarry, K. J. L., E. Downs, R. Bryden, J. Clark, L. Griggs, R. Kopulos, C. M. Boettger, T. J. Carr, C. L. Keeler, E. Collisson, and Y. Drechsler. 2017. RNA sequencing demonstrates large-scale temporal dysregulation of gene expression in stimulated macrophages derived from MHC-defined chicken haplotypes. Plos One 12.

*Irizarry, K. J., A. Chan, D. Kettle, S. Kezian, D. Ma, L. Palacios, Q. Q. Li, C. L. Keeler, and Y. Drechsler. 2017. Bioinformatics analysis of chicken miRNAs associated with monocyte to macrophage differentiation and subsequent IFNγ stimulated activation. MicroRNA 6:53–70.

*Kogut, M. H., C. L. Swaggerty, J. A. Byrd, R. Selvaraj, and R. J. Arsenault. 2016. Chicken-Specific Kinome Array Reveals that Salmonella enterica Serovar Enteritidis Modulates Host Immune Signaling Pathways in the Cecum to Establish a Persistent Infection. Int. J. Mol. Sci. 17:1207.

*Lee, S. H., X. Dong, H. S. Lillehoj, S. J. Lamont, X. Suo, D. K. Kim, K.-W. Lee, and Y. H. Hong. 2016. Comparing the immune responses of two genetically B-complex disparate Fayoumi chicken lines to Eimeria tenella. Brit. Poult. Sci. 57:165–171. doi:10.1080/00071668.2016.1141172

*Miller, M. M., and R. L. Taylor, Jr. 2016.  Brief review of the chicken major histocompatibility complex – the genes, their distribution on chromosome 16 and their contribution to disease resistance. Poult. Sci. 95:375-392 doi:10.3382/ps/pev379 (review)

*Nguyen-Phuc, H., J.E. Fulton, and M.E. Berres, 2016.  Genetic variation of Major Histocompatibility Complex (MHC) in wild Red JungleFowl (Gallus gallus).  Poultry Science 95:400-411.

*Wang, Y., P. Saelao, K. Chanthavixay, R. A. Gallardo, D. Bunn, S. Lamont, J. Dekkers, T. Kelly, and H. Zhou. 2017. Physiological responses to heat stress in two genetically distinct chicken inbred lines. Poult. Sci. in press

*Zhang, J., M. Kaiser, M. Deist, R. A. Gallardo, D. Bunn, T. Kelly, J. Dekkers, H. Zhou, and S. J. Lamont. 2017. Transcriptome analysis in spleen reveals differential regulation of response to Newcastle disease virus in two chicken lines. Sci. Rep. in press

 

96 publications from individual project participants

Ahrens, B. J., L. Li, A. K. Ciminera, J. Chea, E. Poku, J. R. Bading, M. R. Weist, M. M. Miller, D. M. Colcher, and J. E. Shively. 2017. Diagnostic PET Imaging of Mammary Microcalcifications Using 64Cu-DOTA-Alendronate in a Rat Model of Breast Cancer. J. Nuclear Med. 58:1373-1379.

Allali, I., J. W. Arnold, J. Roach, M. B. Cadenas, N. Butz, H. M. Hassan, M. Koci, A. Ballou, M. Mendoza, R. Ali, and M. A. Azcarate-Peril. 2017. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome. BMC Microbiol 17:194. doi 10.1186/s12866-017-1101-8.

Arsenault, R. J., J. T. Lee, R. Latham, B. Carter, and M. H. Kogut. 2017.  Changes in immune and metabolic gut response in broilers fed β-mannanase in β-mannan-containing diets. Poult. Sci. Sep 14. doi: 10.3382/ps/pex246.

Arsenault, R. J., K. J. Genovese, H. He, H. Wu, A. S. Neish, and M. H. Kogut. 2016. Wild-type and mutant AvrA−Salmonella induce broadly similar immune pathways in the chicken ceca with key differences in signaling intermediates and inflammation. Poult. Sci. 95:354–363.

Ballou, A. L., R. A. Ali, M. A. Mendoza, J. C. Ellis, H. M. Hassan, W. J. Croom, and M. D. Koci. 2016. Development of the Chick Microbiome: How Early Exposure Influences Future Microbial Diversity. Front Vet Sci 3:2. doi 10.3389/fvets.2016.00002

Barrios, M. A., A. Kenyon, and R. B. Beckstead. 2017. Development of a dry medium for isolation of Histomonas meleagridis in the field. Avian Dis. 61:242-244

Bickhart, D. M., L. Xu, J. L. Hutchison, J. B. Cole, D. J. Null, S. G. Schroeder, J. Song, J. F. Garcia, T. S. Sonstegard, C. P. Van Tassell, R. D. Schnabel, J. F. Taylor, H. A. Lewin, and G. E. Liu. 2016. Diversity and population-genetic properties of copy number variations and multicopy genes in cattle. DNA Res 23:253-262. doi 10.1093/dnares/dsw013

Carrillo, J. A., Y. He, Y. Li, J. Liu, R. A. Erdman, T. S. Sonstegard, and J. Song. 2016. Integrated metabolomic and transcriptome analyses reveal finishing forage affects metabolic pathways related to beef quality and animal welfare. Sci Rep 6:25948. doi 10.1038/srep25948

Chen, H., Q. Zuo, Y. Wang, J. Song, H. Yang, Y. Zhang, and B. Li. 2017. Inducing goat pluripotent stem cells with four transcription factor mRNAs that activate endogenous promoters. BMC Biotechnol 17:11. doi 10.1186/s12896-017-0336-7

Chen, H., Q. Zuo, Y. Wang, M. F. Ahmed, K. Jin, J. Song, Y. Zhang, and B. Li. 2017. Regulation of Hedgehog Signaling in Chicken Embryonic Stem Cells Differentiation Into Male Germ Cells (Gallus). J Cell Biochem 118:1379-1386. doi 10.1002/jcb.25796

Chen, Y., J. Stookey, R. Arsenault, E. Scruten, P. Griebel, and S. Napper. 2016. Investigation of the physiological, behavioral, and biochemical responses of cattle to restraint stress. J. Anim. Sci. 94:3240–3254.

Chou, W.-K., C.-H. Chen, C. N. Vuong, D. Abi-Ghanem, S. D. Waghela, W. Mwangi, L. R. Bielke, B. M. Hargis, and L. R. Berghman. 2016. Significant mucosal sIgA production after a single oral or parenteral administration using in vivo CD40 targeting in the chicken. Res. Vet. Sci. 108:112–115.

Clarke, L. L, R. B. Beckstead, J. R. Hayes, and D. R. Rissi. 2017. Pathologic and molecular characterization of histomoniasis in peafowl (Pavo cristatus). J. Vet. Diagn. Invest. 29:237-241

Collisson, E., L. Griggs, and Y. Drechsler. 2017. Macrophages from disease resistant B2 haplotype chickens activate T lymphocytes more effectively than macrophages from disease susceptible B19 birds. Developmental & Comparative Immunology 67:249–256.

Cooper, J., Y. Ding, J. Song, and K. Zhao. 2017. Genome-wide mapping of DNase I hypersensitive sites in rare cell populations using single-cell DNase sequencing. Nat Protoc 12:2342-2354. doi 10.1038/nprot.2017.099

Derksen T. J., Lampron R., Hauck R., M. Pitesky, and R. A. Gallardo. 2017. Biosecurity assessment and seroprevalence of respiratory diseases in backyard poultry flocks located close and far from commercial premises. Avian Dis. (In press).

Drobik-Czwaro, W., A. Wolc, J.E. Fulton, J. Arango, T. Jankowski, N.P. O’Sullivan and J.C.M. Dekkers, 2017.  Identifying the genetic basis for resistance to avian influenza in commercial egg layer chickens.  Animal.  doi: 10.1017/S1751731117002889

Erf, G. F., and I. R. Ramachandran. 2016. The growing feather as a dermal test-site: comparison of leukocyte profiles during the response to Mycobacterium butyricum in growing feathers, wattles, and wing webs. Poult. Sci.: 95:2011-2022.

Erf, G. F., D. M. Falcon, K. A. Sullivan, and S.E. Bourdo. 2017. T lymphocytes dominate local leukocyte infiltration in response to intradermal injection of functionalized graphene-based nanomaterial. J. Applied Toxicol. 37:1317-1324.

Erf, G. F., H. R. Kong, K. A. Byrne, D. M. Falcon, and Z. Aguilar. 2017. Novel approach to simultaneously assess and monitor an individual’s humoral and cellular immune responses in the chicken model. PLOS ONE (submitted; PONE-D-17-42058).

Figueroa A., R. Hauck, J. Saldias-Rodriguez, and R. A. Gallardo. 2017. Combination of quaternary ammonia and glutaraldehyde as a disinfectant against enveloped and non-enveloped viruses. J. Appl. Poult. Res. 26(4): 491-497.

Fulton, J.E., A.R. Lund, A.M. McCarron, K.N. Pinegar, D.R. Korver, H.L. Classen, S. Aggrey, C. Utterbach, N.B. Anthony and M.E. Berres, 2016.  MHC variability in heritage breeds of chickens.  Poultry Science 95:393-399.

Grenier, B., I. Dohnal, R. Shanmugasundaram, S. D. Eicher, R. K. Selvaraj, G. Schatzmayr, and T. J. Applegate. 2016. Susceptibility of Broiler Chickens to Coccidiosis When Fed Subclinical Doses of Deoxynivalenol and Fumonisins-Special Emphasis on the Immunological Response and the Mycotoxin Interaction. Toxins (Basel) 8.

Han, B., L. Lian, X. Li, C. Zhao, L. Qu, C. Liu, J. Song, and N. Yang. 2016a. Chicken gga-miR-103-3p Targets CCNE1 and TFDP2 and Inhibits MDCC-MSB1 Cell Migration. G3 (Bethesda) 6:1277-1285. doi 10.1534/g3.116.028498

Han, B., L. Lian, X. Li, C. Zhao, L. Qu, C. Liu, J. Song, and N. Yang. 2016b. Chicken gga-miR-130a targets HOXA3 and MDFIC and inhibits Marek's disease lymphoma cell proliferation and migration. Mol Biol Rep 43:667-676. doi 10.1007/s11033-016-4002-2

Han, B., Y. He, L. Zhang, Y. Ding, L. Lian, C. Zhao, J. Song, and N. Yang. 2017. Long intergenic non-coding RNA GALMD3 in chicken Marek's disease. Sci Rep 7:10294. doi 10.1038/s41598-017-10900-2

Hauck R., B. Crossley, D. Rejmanek, H. Zhou, and R. A. Gallardo. 2017. Persistence of high and low pathogenic avian influenza viruses in footbaths and poultry manure. Avian Dis. 61:64-69.

Hauck R., C. G. Sentíes-Cué, Y. Wang, C. Kern, H. L. Shivaprasad, H. Zhou, and R. A. Gallardo. 2017. Evolution of avian encephalomyelitis virus during embryo adaptation. Vet. Microbiol. 204:1-7.

Hauck, R., C. G. Sentíes-Cué, Y. Wang, C. Kern, H. L. Shivaprasad, H. Zhou, and R. A. Gallardo. 2017. Evolution of avian encephalomyelitis virus during embryo-adaptation. Vet Microbiol 204:1-7. doi: 10.1016/j.vetmic.2017.04.005. Epub 2017 Apr 9.

Hauck, R., D. Crossley, D. Rejmanek, H. Zhou, and R. A. Gallardo. 2017. Persistence of high and low pathogenic avian influenza viruses in footbaths and poultry manure. Avian Dis 61:64-69.

He, Y. H., S. Y. Pu, F. H. Xiao, X. Q. Chen, D. J. Yan, Y. W. Liu, R. Lin, X. P. Liao, Q. Yu, L. Q. Yang, X. L. Yang, M. X. Ge, Y. Li, J. J. Jiang, W. W. Cai, and Q. P. Kong. 2016. Improved lipids, diastolic pressure and kidney function are potential contributors to familial longevity: a study on 60 Chinese centenarian families. Sci Rep 6:21962. doi 10.1038/srep21962

He, Y., M. Song, Y. Zhang, X. Li, J. Song, Y. Zhang, and Y. Yu. 2016. Whole-genome regulation analysis of histone H3 lysin 27 trimethylation in subclinical mastitis cows infected by Staphylococcus aureus. BMC Genomics 17:565. doi 10.1186/s12864-016-2947-0

He, Y., Y. Ding, F. Zhan, H. Zhang, B. Han, G. Hu, K. Zhao, N. Yang, Y. Yu, L. Mao, and J. Song. 2016. Corrigendum: The conservation and signatures of lincRNAs in Marek's disease of chicken. Sci Rep 6:19422. doi 10.1038/srep19422

Heidaritabar, M., A. Wolc, J. Arango, J. Zeng, P.Settar, J.E. Fulton, N.P.O’Sullivan, J.W.M, Bastiaansen, R.L. Fernando, D.J. Garrick, JCM. Dekkers, 2016. Impact of fitting dominance and additive effects on accuracy of genomic prediction of breeding values in layers. J. Anim. Breed. Genet. 5:334-346.

Hughes, R. A., R. A. Ali, M. A. Mendoza, H. M. Hassan, and M. D. Koci. 2017. Impact of dietary galacto-oligosaccharide (GOS) on chicken's gut microbiota, mucosal gene expression, and Salmonella colonization. Front Vet Sci 4:192. doi 10.3389/fvets.2017.00192

Jia, X., Q. Nie, X. Zhang, L. K. Nolan, and S. J. Lamont. 2017. Novel miRNA involved in host response to avian pathogenic Escherichia coli identified by deep sequencing and integration analysis. Infect. Immun. 85:e00688-16. doi.org/10.1128/IAI.00688-16

Kogut, M. H., and R. J. Arsenault. 2017. Immunometabolic Phenotype Alterations Associated with the Induction of Disease Tolerance and Persistent Asymptomatic Infection of Salmonella in the Chicken Intestine. Front. Immunol. 8

Kogut, M. H., K. J. Genovese, H. He, and R. J. Arsenault. 2016a. AMPK and mTOR: sensors and regulators of immunometabolic changes during Salmonella infection in the chicken. Poult. Sci. 95:345–353.

Kropp, J., J. A. Carrillo, H. Namous, A. Daniels, S. M. Salih, J. Song, and H. Khatib. 2017. Male fertility status is associated with DNA methylation signatures in sperm and transcriptomic profiles of bovine preimplantation embryos. BMC Genomics 18:280. doi 10.1186/s12864-017-3673-y

Lai, F. N., H. L. Zhai, M. Cheng, J. Y. Ma, S. F. Cheng, W. Ge, G. L. Zhang, J. J. Wang, R. Q. Zhang, X. Wang, L. J. Min, J. Z. Song, and W. Shen. 2016. Whole-genome scanning for the litter size trait associated genes and SNPs under selection in dairy goat (Capra hircus). Sci Rep 6:38096. doi 10.1038/srep38096

Lan, X., Y. Wang, K. Tian, F. Ye, H.-D. Yin, X.-L. Zhao, H.-Y. Xu, Y. Huang, H. Liu, J. Hsieh, S. Lamont, and Q. Zhu. 2017. Integrated host and viral transcriptome analyses reveal pathology and inflammatory response mechanisms to ALV-J injection in SPF chickens. Sci. Reports 7:46156. doi: 10.1038/srep46156

Lee, M. O., H.-J. Jang, D. Rengaraj, S.-Y. Yang, J. Y. Han, S. J. Lamont, and J. E. Womack. 2016. Tissue expression and antibacterial activity of host defense peptides in chicken. BMC Vet Res 12:231. doi: 10.1186/s12917-016-0866-6

Lee, M. O., L. Andersson, S. J. Lamont, J. Chen, and J. E. Womack. 2016. Duplication of defensin7 gene in Fayoumi chickens generated by gene conversion and homologous recombination. PNAS 113:13815–13820. doi: 10.1073/pnas.1616948113

Li, D., Y. Ji, F. Wang, Y. Wang, M. Wang, C. Zhang, W. Zhang, Z. Lu, C. Sun, M. F. Ahmed, N. He, K. Jin, S. Cheng, Y. Wang, Y. He, J. Song, Y. Zhang, and B. Li. 2017. Regulation of crucial lncRNAs in differentiation of chicken embryonic stem cells to spermatogonia stem cells. Anim Genet 48:191-204. doi 10.1111/age.12510

Luoma, A., A. Markazi, R. Shanmugasundaram, G. R. Murugesan, M. Mohnl, and R. Selvaraj. 2017. Effect of synbiotic supplementation on layer production and cecal Salmonella load during a Salmonella challenge. Poult Sci. doi: 10.3382/ps/pex251.

Markazi, A. D., V. Perez, M. Sifri, R. Shanmugasundaram, and R. K. Selvaraj. 2017. Effect of whole yeast cell product supplementation (CitriStim(R)) on immune responses and cecal microflora species in pullet and layer chickens during an experimental coccidial challenge. Poult. Sci. 96:2049-2056.

Mason, A.S., J.E. Fulton, P.M Hocking and D.W. Burt, 2016.  A new look at the LTR retrotansposon content of the chicken genome.  BMC Genomics 17:688. doi: 10.1186/s12864-016-3043-1

McPherson, M.C., and M.E. Delany. 2016. Virus and host genomic, molecular and cellular interactions during Marek’s disease pathogenesis and oncogenesis. Poultry Science 95:412-429. http://ps.oxfordjournals.org/content/early/2016/01/14/ps.pev369.full.pdf?papetoc

McPherson, M.C., H.H Cheng, and M.E. Delany. 2016. Marek’s disease herpesvirus vaccines integrate into chicken host chromosomes yet lack a virus-host phenotype associated with oncogenic transformation.  Vaccine 34:5554-5561 http://dx.doi.org/10.1016/j.vaccine.2016.09.051 (Highlighted article November 2016: http://www.journals.elsevier.com/vaccine/highlighted-articles/highlighted-article-november-2016

Meliopoulos, V. A., S. A. Marvin, P. Freiden, L. A. Moser, P. Nighot, R. Ali, A. Blikslager, M. Reddivari, R. J. Heath, M. D. Koci, and S. Schultz-Cherry. 2016. Oral Administration of Astrovirus Capsid Protein Is Sufficient To Induce Acute Diarrhea In Vivo. MBio 7. doi 10.1128/mBio.01494-16

Nazmi A., R. Hauck, A. Davis, M. Hildebrand, L.B. Corbeil, and R. A. Gallardo. 2017.  Diatoms and diatomaceous earth as novel poultry vaccine adjuvants.  Poult. Sci. 92:288-294

Neerukonda, S.N., U. K. Katneni, S. Golovan, and M. S. Parcells. 2016. Evaluation and validation of reference gene stability during Marek’s disease virus (MDV) infection. J. Virol. Methods 236:111-116.

Neerukonda, S. N., N. A. Egan, and M. S. Parcells. 2017. Exosomal communication during infection, inflammation, and virus-associated pathology. J. Cancer and Thera. Sci.,1(1)https://inscienz.com/journals/cancer/JCTS-1-104.php

Nazmi A., R. Hauck, L. B. Corbeil, and R. A. Gallardo. 2017. The effect of diatomaceous earth in live attenuated infectious bronchitis vaccine, immune responses and protection against challenge. Poult. Sci. 96:8 2623-2629.

Padhi, A., and M. S. Parcells. 2016. Positive selection drives rapid evolution of the meq oncogene of Marek’s disease virus. PLoS ONE Sep 23;11(9):e0162180. doi: 10.1371/journal.pone.0162180.

Perez, V., R. Shanmugasundaram, M. Sifri, T. M. Parr, and R. K. Selvaraj. 2017. Effects of hydroxychloride and sulfate form of zinc and manganese supplementation on superoxide dismutase activity and immune responses post lipopolysaccharide challenge in poultry fed marginally lower doses of zinc and manganese. Poult. Sci.. doi: 10.3382/ps/pex244

Placek, K., G. Hu, K. Cui, D. Zhang, Y. Ding, J. E. Lee, Y. Jang, C. Wang, J. E. Konkel, J. Song, C. Liu, K. Ge, W. Chen, and K. Zhao. 2017. MLL4 prepares the enhancer landscape for Foxp3 induction via chromatin looping. Nat Immunol 18:1035-1045. doi 10.1038/ni.3812

Rezvani, M., M. Mendoza, M. D. Koci, C. Daron, J. Levy, and H. M. Hassan. 2016a. Draft Genome Sequence of Lactobacillus crispatus C25 Isolated from Chicken Cecum. Genome Announc 4. doi 10.1128/genomeA.01223-16

Rezvani, M., M. Mendoza, M. D. Koci, C. Daron, J. Levy, and H. M. Hassan. 2016b. Draft Genome Sequences of Lactobacillus animalis Strain P38 and Lactobacillus reuteri Strain P43 Isolated from Chicken Cecum. Genome Announc 4. doi 10.1128/genomeA.01229-16

Schaal, T.P., J. Arango, A. Wolc, J.V. Brady, J.E. Fulton, I. Rubinoff, I.J. Ehr, M.E. Persia and N.P. O’Sullivan, 2016.  Commercial Hy-Line W-36 pullet and laying hen venous blood gas and chemistry profiles utilizing the portable i-STAT 1 analyzer.  Poultry Science 95:466-471.

Schock, E.N., C.-F. Chang, I. Youngworth, M. Davey, M.E.  Delany, and S.A. Brugmann. 2016. Utilizing the chicken as an animal model for human craniofacial ciliopathies. Developmental Biology 45(2):326-337. http://dx.doi.org/10.1016/j.ydbio.2015.10.024 (PMID: 26597494)

Shi, S., Y. Shen, S. Zhang, Z. Zhao, Z. Hou, H. Zhou, J. Zou, and Y. Guo. 2017. Combinatory evaluation of transcriptome and metabolome profiles of low temperature-induced resistant ascites syndrome in broiler chickens. Sci Rep 7(1):2389. doi: 10.1038/s41598-017-02492-8.

Slawinska, A., J. C.-F. Hsieh, C. Schmidt, and S. J. Lamont. 2016. Heat stress and lipopolysaccharide stimulation of chicken HD11 cell line activates expression of distinct sets of genes. PLOS ONE. doi:10.1371/journal.pone.0164575

Stepicheva, N. A., and J. L. Song. 2016. Function and regulation of microRNA-31 in development and disease. Mol Reprod Dev 83:654-674. doi 10.1002/mrd.22678

Sullivan K. A., and G. F. Erf. 2017. Leukocyte infiltration profiles during the cutaneous phytohemagglutinin response. Poult. Sci. 96:3574-3580.

Sun, H., P. Liu, L. K. Nolan, and S. J. Lamont. 2016. Thymus transcriptome reveals novel pathways in response to avian pathogenic Escherichia coli infection. Poult. Sci. 95:2803–2814.  doi: 10.3382/ps/pew202

Sun, H., R. Bi, P. Liu, L. K. Nolan, and S. J. Lamont. 2016. Combined analysis of primary lymphoid tissues' transcriptomic response to extra-intestinal Escherichia coli (ExPEC) infection. Dev Comp Immunol 57: 99–106

Swaggerty, C. L., I. Y. Pevzner, H. He, K. J. Genovese, and M. H. Kogut. 2017. Selection for pro-inflammatory mediators produces chickens more resistant to Campylobacter jejuni. Poult. Sci. 96:1623-1627.

Swaggerty, C. L., J. L. McReynolds, J. A. Byrd, I. Y. Pevzner, S. E. Duke, K. J. Genovese, H. He, and M. H. Kogut. 2016. Selection for pro-inflammatory mediators produces chickens more resistant to Clostridium perfringens-induced necrotic enteritis. Poult. Sci. 95:370-374.

Swaggerty, C. L., Kogut, M. H., He, H., Genovese, K. J., Johnson, C., and Arsenault, R. J. 2017. Differential levels of cecal colonization by Salmonella enteritidis in chickens triggers distinct immune kinome profiles.  Front. Vet. Sci. | doi: 10.3389/fvets.2017.00214 

Taylor, R. L., Jr.  2016. Letter to the Editor – A publication experiment.  Poult. Sci. 95:227 doi:10.3382/ps/pev451

Taylor, R. L., Jr. 2016.  Nunc Dimitis - W. Elwood Briles. Poult. Sci. 95:2477 doi:10.3382/ps/pew176

Taylor, R. L., Jr. 2017.  Renew the priority for manuscript review.  Poult. Sci. 96:4133 doi 10.3382/ps/pex267

Taylor, R. L., Jr., Z. Medarova, and W. E. Briles. 2016.  Immune effects of chicken non-Mhc alloantigens. Poult. Sci. 95:447-457 doi:10.3382/ps/pev331 (review)

Tilley, J. E. N., J. L. Grimes, M. D. Koci, R. A. Ali, C. R. Stark, P. K. Nighot, T. F. Middleton, and A. C. Fahrenholz. 2017. Efficacy of feed additives to reduce the effect of naturally occurring mycotoxins fed to turkey hen poults reared to 6 weeks of age. Poult Sci. doi 10.3382/ps/pex214

Tuggle, C. K., E. Giuffra, S. N. White, L. Clarke, H. Zhou, P. J. Ross, H. Acloque, J. M. Reecy, A. Archibald, R. R. Bellone, M. Boichard, A. Chamberlain, H. Cheng, R. P. Crooijmans, M. E. Delany, C. J. Finno, M. A. Groenen, B. Hayes, J. K. Lunney, J. L. Petersen, G. S. Plastow, C. J. Schmidt, J. Song, and M. Watson. 2016. GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes. Anim Genet 47:528-533. doi 10.1111/age.12466

Tuggle, C., E. Giuffra, S. N. White, L. Clarke, H. Zhou, P. J. Ross, H. Acloque, J. M. Reecy, A. Archibald, R. R. Bellone, M. Boichard, A. Chamberlain, H. Cheng, R. P.M.A. Crooijmans, M. E. Delany, C. J. Finno, M. A. M. Groenen, B. Hayes, J. K. Lunney, J. L. Petersen, G. S. Plastow, C. J. Schmidt, J. Song, and M. Watson. 2016. “GO-FAANG meeting: a Gathering on functional annotation of animal genomes” Animal Genet DOI: 10.1111/age.12466.

Tuo, W., L. Li, Y. Lv, J. Carrillo, D. Brown, W. C. Davis, J. Song, D. Zarlenga, and Z. Xiao. 2016. Abomasal mucosal immune responses of cattle with limited or continuous exposure to pasture-borne gastrointestinal nematode parasite infection. Vet Parasitol 229:118-125. doi 10.1016/j.vetpar.2016.10.005

Van Goor, A., A. Slawinska, C. J. Schmidt, and S. J. Lamont. 2016. Distinct functional responses to stressors of bone marrow derived dendritic cells from diverse inbred chicken lines. Dev. Comp. Immunol. 63: 96–110

Van Goor, A., C. M. Ashwell, M. E. Persia, M. F. Rothschild, C. J. Schmidt, and S. J. Lamont. 2017. Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and heat. PLOS ONE 12(2): e0171414. doi:10.1371/journal.pone.0171414

Vuong, C. N., W.-K. Chou, V. A. Kuttappan, B. M. Hargis, L. R. Bielke, and L. R. Berghman. 2017. A Fast and Inexpensive Protocol for Empirical Verification of Neutralizing Epitopes in Microbial Toxins and Enzymes. Front. Vet. Sci. 4 Available at https://www.frontiersin.org/articles/10.3389/fvets.2017.00091/full

Wang, X., J. Liu, G. Zhou, J. Guo, H. Yan, Y. Niu, Y. Li, C. Yuan, R. Geng, X. Lan, X. An, X. Tian, H. Zhou, J. Song, Y. Jiang, and Y. Chen. 2016. Whole-genome sequencing of eight goat populations for the detection of selection signatures underlying production and adaptive traits. Sci Rep 6:38932. doi 10.1038/srep38932

Warren, W.C., L.W. Hillier, C. Tomlinson, P. Minx, M. Kremitzki, T. Graves, C. Markovic, N. Bouk, K. Pruitt, F. Thibaud-Nissen, V. Schneider. T. Mansour, C.T. Brown, A. Zimin, R. Hawken, A.B. Pyrkosz, M. Morisson, V. Fallon, A. Vignal, W. Chow, K. Howe, J.E. Fulton, M.M. Miller, P.I. Lovell, C. Mello, M. Wirthlin, A.S. Mason, R. Kuo, D.W. Burt, J.B Dodgson and H.H. Cheng, 2017.  A new chicken genome assembly provides insight into avian genome structure. G3: Genes, Genomes, Genetics, 7 (1) p 109-117.  doi:10.1534/g3.116.035923

Weng, Z., A. Wolc, X. Shen, R.L. Fernando, J.C.M. Dekkers. J. Arango. P. Settar, J.E. Fulton, N.P. O’Sullivan, and D.J. Garrick, 2016.  Effects of number of training generations on genomic prediction for various traits in a layer chicken population.  Genetics Selection Evolution 48:22, DOI 10.1186/s12711-016-0198-9.

Wolc, A., A. Kranis, J. Arango, P. Settar, J.E. Fulton, N.P. O’Sullivan, A. Avendano, K.A. Watson, J.M. Hickey, G. de los Campos, R.L. Fernando, D.J. Garrick and J.C.M. Dekkers, 2016.  Implementation of genomic selection in the poultry industry.  Animal Frontiers 6: 23-31.

Wolc, A., J. Arango, P. Settar, J.E. Fulton, N.P. O’Sullivan, J.C.M. Deckers, R. Fernando and D.J. Garrick, 2016.  Mixture models detect large effect QTL better than GBLUP and result in more accurate and persistent predictions.  J. Anim. Sci. Biotech. doi 10.1186/s40104-016-0066-z

Xu, L., R. J. Haasl, J. Sun, Y. Zhou, D. M. Bickhart, J. Li, J. Song, T. S. Sonstegard, C. P. Van Tassell, H. A. Lewin, and G. E. Liu. 2017. Systematic Profiling of Short Tandem Repeats in the Cattle Genome. Genome Biol Evol 9:20-31. doi 10.1093/gbe/evw256

Xu, L., Y. He, Y. Ding, G. Sun, J. A. Carrillo, Y. Li, M. M. Ghaly, L. Ma, H. Zhang, G. E. Liu, and J. Song. 2017. Characterization of Copy Number Variation's Potential Role in Marek's Disease. Int J Mol Sci 18. doi 10.3390/ijms18051020

Xu, L., Y. Hou, D. M. Bickhart, Y. Zhou, H. A. Hay el, J. Song, T. S. Sonstegard, C. P. Van Tassell, and G. E. Liu. 2016. Population-genetic properties of differentiated copy number variations in cattle. Sci Rep 6:23161. doi 10.1038/srep23161

Zar Mon, K. K., P. Saelao, M. M. Halstead, G. Chanthavixay, H.-C. Chang, L. Garas, E. A Maga, and H. Zhou. 2016. Salmonella enterica serovars Enteritidis infection alters the indigenous microbiota diversity in young layer chicks. Front. Vet. Sci. - Veterinary Infectious Diseases. 2:61. doi: 10.3389/fvets.2015.00061.

Zhang, C., M. Wang, N. He, M. F. Ahmed, Y. Wang, R. Zhao, X. Yu, J. Jin, J. Song, Q. Zuo, Y. Zhang, and B. Li. 2018. Hsd3b2 associated in modulating steroid hormone synthesis pathway regulates the differentiation of chicken embryonic stem cells into spermatogonial stem cells. J Cell Biochem 119:1111-1121. doi 10.1002/jcb.26279

Zhao, C., X. Li, B. Han, Z. You, L. Qu, C. Liu, J. Song, L. Lian, and N. Yang. 2017. Gga-miR-219b targeting BCL11B suppresses proliferation, migration and invasion of Marek's disease tumor cell MSB1. Sci Rep 7:4247. doi 10.1038/s41598-017-04434-w

Zhou, H., P. J. Ross, C. Kern, P. Saelao, Y. Wang, J. L. Chitwood, I. Korf, M. Delany, and H. Cheng. 2016. Genome-wide functional annotation of regulatory elements in chickens. Pp:48-52. The Proceedings of XXV World’s Poultry Congress, Beijing, China.

Zhu,Y.,  W. Wang, T. Yuan, L. Fu, L. Zhou, G. Lin, S. Zhao, H. Zhou, G. Wu, and J. Wang. 2017. MicroRNA-29a mediates the impairment of intestinal epithelial integrity induced by intrauterine growth restriction in pig. Am J Physiol Gastrointest Liver Physiol. 312(5):G434-G442. doi: 10.1152/ajpgi.00020.2017. Epub 2017 Mar 9.

Zuo, Q., K. Jin, Y. Zhang, J. Song, and B. Li. 2017. Dynamic expression and regulatory mechanism of TGF-beta signaling in chicken embryonic stem cells differentiating into spermatogonial stem cells. Biosci Rep 37. doi 10.1042/BSR20170179

Zuo, Q., Y. Wang, S. Cheng, C. Lian, B. Tang, F. Wang, Z. Lu, Y. Ji, R. Zhao, W. Zhang, K. Jin, J. Song, Y. Zhang, and B. Li. 2016. Site-Directed Genome Knockout in Chicken Cell Line and Embryos Can Use CRISPR/Cas Gene Editing Technology. G3 (Bethesda) 6:1787-1792. doi 10.1534/g3.116.028803

 

5 total book chapters from NE-1334 Project participants 2016-2017

Erf, G. F., and I. C. Le Poole. 2017. Animal Models for Vitiligo; in: Vitiligo, 2nd edition. M. Picardo and A. Taieb, editors; Springer, SPi Global in press

He, Y. and J. Song. 2017 Bioinformatics analysis of Epigenetics. Bioinformatics in Aquaculture: Principles and Methods, First Edition. © 2017 John Wiley & Sons Ltd.

Koci MD and S. Schultz-Cherry. 2017. Astrovirus. Pages 26-38 in Food Microbiology Series: Laboratory Models for Foodborne Infections. D. Liu, ed. CRC Press, Boca Raton. 2017. ISBN: 978-1-4987-2168-4.

Webb, K. C., S. W. Henning, G. F. Erf, and I. C. Le Poole. 2017. Autoimmune Pathology of Vitiligo; in: Vitiligo, 2nd edition. M. Picardo and A. Taieb, editors; Springer, SPi Global in press

Wolc, A, and J.E. Fulton, 2016.  Molecular breeding techniques to improve egg quality.  In Achieving Sustainable Production of Eggs. Chapter 19.   Ed. J. Roberts.

10/02/2018