02/28/2013

1. Sahin O, Fitzgerald C, Stroika S, Zhao S, Sippy RJ, Kwan P, Plummer PJ, Han J, Yaeger MJ, Zhang Q. 2012. Molecular Evidence for Zoonotic Transmission of an Emergent Highly Pathogenic Campylobacter jejuni Clone in the United States. J. Clin. Microbiol. 50:680-687. PMID: 22189122. PMCID: PMC3295108.

2. Plummer P, Sahin O, Burrough E, Sippy R, Mou K, Rabenold J, Yaeger M, Zhang Q. 2012. Critical Role of LuxS in the Virulence of Campylobacter jejuni in a Guinea Pig Model of Abortion. Infect. Immun. 80:585-93. PMID: 22144479. PMCID: PMC3264297.

3. Luo Y, Sahin O, Dai L, Sippy R, Wu Z, Zhang Q. 2012. Development of a Loop-Mediated Isothermal Amplification Assay for Rapid, Sensitive and Specific Detection of a Campylobacter jejuni Clone. J. Vet. Med. Sci. 74:591596. PMID: 22188995.

4. Burrough ER, Zuowei Wu, Orhan Sahin, Zhang Qijing, Mike J. Yaeger. 2012. Spatial Distribution of Putative Growth Factors in the Guinea Pig Placenta and the Effects of These Factors, Plasma, and Bile on the Growth and Chemotaxis of C. jejuni. Vet. Pathol. 49:470-481. PMID: 22081135.

5. Luangtongkum T, Shen Z, Seng VW, Sahin O, Jeon B, Liu P, Zhang Q. 2012. Impaired fitness and transmission of macrolide-resistant Campylobacter jejuni in its natural host. Antimicrob. Agents Chemother. 56:1300-1308. PMID: 22183170. PMCID: PMC3294946.

6. Han J, Wang Y, Sahin O, Shen Z, Guo B, Shen J, and Zhang Q. 2012. A fluoroquinolone resistance associated mutation in gyrA affects DNA supercoiling in Campylobacter jejuni. Front. Microbiol. 2:21. PMID: 22919613. PMCID: PMC3417464.

7. Sippy R, Sandoval-Green CM, Sahin O, Plummer P, Fairbanks WS, Zhang Q, Blanchong JA. 2012. Occurrence and molecular analysis of Campylobacter in wildlife on livestock farms. Vet. Micro. 157:369-75. PMID: 22266157.

8. Hwang S, Zhang Q, Ryu S, Jeon B. 2012. Transcriptional regulation of the CmeABC multidrug efflux pump and the KatA catalase by CosR in Campylobacter jejuni. J Bacteriol. 2012 Oct 12. [Epub ahead of print]. PMID: 23065977.

9. Shen Z, Pu XY, and Zhang Q. 2011. Salicylate functions as an efflux pump inducer and promotes the emergence of fluoroquinolone-resistant Campylobacter jejuni mutants. Appl Environ Microbiol. 77:7128-33. PMID: 21821741. PMCID: PMC3194847.

10. Kassem II, Sanad YM, Stonerock R, Rajashekara G. 2012. An evaluation of the effect of sodium bisulfate as a feed additive on Salmonella enterica serotype Enteritidis in experimentally infected broilers. Poult Sci. Apr;91(4):1032-7.

11. Yasser M. Sanad, Gary Closs Jr, Anand Kumar, Jeffrey T. LeJeune, Gireesh Rajashekara. 2012. Molecular Epidemiology and Public Health Relevance of Campylobacter Isolated from Dairy Cattle and European Starlings in Ohio, USA. Foodborne pathogens and diseases, (In press)

12. Issmat I. Kassem1, Mahesh Khatri, Malak A. Esseili, Yasser M. Sanad, Yehia M. Saif, Jonathan W. Olson2, Gireesh Rajashekara. 2012. Respiratory proteins contribute differentially to Campylobacter jejunis survival and in vitro interaction with hosts intestinal cells. BMC Microbiology, Nov 13;12(1):258.

13. Sanad, Y.M., I.I. Kassem, Z. Liu, J. Lin, J. T. Lejune, and G. Rajashekara. 2012. Occurrence of the invasion associated marker (iam) in C. jejuni isolated from cattle. BMC Research Notes. 4:570

14. Jun Lin J, KS Mateo, M Zhao, AK Erickson, N Garcia, D He, RA Moxley and DH Francis. 2012. Protection of Piglets against Enteric Colibacillosis by Intranasal Immunization with K88ac (F4ac) Fimbriae and Heat Labile Enterotoxin of Escherichia coli. Vet Microbiol. Epub ahead of press.

15. Zeng, X., F. Xu, Y. Mo, and J. Lin. 2012. Identification and characterization of a periplasmic trilactone esterase, Cee, revealed novel features of ferric enterobactin acquisition in Campylobacter. Molecular Microbiology (Accepted).

16. Theoret JR, Cooper KK, Zekarias B, Roland KL, Law BF, Curtiss R 3rd, Joens LA. The Campylobacter jejuni Dps Homologue Is Important for In Vitro Biofilm Formation and Cecal Colonization of Poultry and May Serve as a Protective Antigen for Vaccination. Clin Vaccine Immunol. 2012 ;19(9):1426-31.

17. Cooper KK, Cooper MA, Zuccolo A, Joens LA. Re-sequencing of a virulent strain of Campylobacter jejuni NCTC11168 reveals potential virulence factors. Res Microbiol. 2012 Oct 6. doi:pii: S0923-2508(12)00136-2. 10.1016/j.resmic.2012.10.002. [Epub ahead of print]

18. Bell JA, Jerome JP, Plovanich-Jones AE, Smith EJ, Gettings JR, Kim HY, Landgraf JR, Lefébure T, Kopper JJ, Rathinam VA, St Charles JL, Buffa BA, Brooks AP, Poe SA, Eaton KA, Stanhope MJ, Mansfield LS. Outcome of infection of C57BL/6 IL-10(-/-) mice with Campylobacter jejuni strains is correlated with genome content of open reading frames up- and down-regulated in vivo. Microbial Pathogenesis 2012 Aug 31. pii: S0882-4010(12)00151-9. doi: 10.1016/j.micpath.2012.08.001.

19. Jerome J.P., Klahn B.D., Bell J.A., Barrick J.E., Brown C.T., and Mansfield L.S. 2012 Draft Genome Sequences of Two C. jejuni Clinical Isolates, NW and D2600, Journal of Bacteriology, in press.

20. Kim JS, Artymovich KA, Hall DF, Smith EJ, Fulton R, Bell JA, Dybas L, Mansfield LS, Tempelman R, Wilson DL, Linz JE. 2012. Passage of Campylobacter jejuni through the chicken reservoir or mice promotes phase variation in contingency genes Cj0045 and Cj0170 that strongly associates with
21. colonization and disease in a mouse model. Microbiology February 16, 2012 as doi:10.1099/mic.0.057158-0.

22. Vannucci FA, Beckler D, Pusterla N, Mapes SM, Gebhart CJ. 2012. Attenuation of virulence of Lawsonia intracellularis after in vitro passages and its effects on the experimental reproduction of porcine proliferative enteropathy. Vet. Micro. (In press)

23. Sampieri F, Vannucci FA, Allen AL, Pusterla N, Antonopoulos A.J., Ball K.R., Thompson J., Dowling P.M., Hamilton D.L., Gebhart C.J. 2012. Species-specificity of equine and porcine L. intracellularis isolates in laboratory animals. Can J Vet Res. (In press)

24. Chander Y, Primus A, Oliveira S, Gebhart CJ. 2012. Phenotypic and molecular characterization of a novel strongly hemolytic Brachyspira species, provisionally designated Brachyspira hampsonii J. Vet. Diag. Investi. 24:903-910.

25. Pusterla N, Mapes S, Gebhart C. 2012. L. intracellularis-specific interferon c gene expression by peripheral blood mononuclear cells in vaccinated and naturally infected foals. Vet. J. 192:249-251.

26. Sampieri F, Allen AL, Pusterla N, Vannucci FA, Anatonopoulos AJ, Hamilton, DL, and Gebhart CJ. 2012. The rabbit as an infection model for equine proliferative enteropathy. Can J. Vet. Res. (In press
)
27. Viott AM, Franca SA, Vannucci FA, Cruz ECC, Costa MC, Gebhart CJ and Guedes MC. 2012. Infection of sparrows (Passer domesticus) and different mice strains with Lawsonia intracellularis. Pesquisa Veterinaria Brazileira. (In press)

28. Vannucci, FA, Foster DN and Gebhart CJ. 2012. Comparative transcriptional analysis of homologous pathogenic and non-pathogenic Lawsonia intracellularis isolates in infected porcine cells. PloS ONE 7(10): e46708. doi:10.1371/journal.pone.0046708

29. Nogradi N, Slovis NM, Gebhart CJ, Wolfsdorf KE, McCrcken JL, Scoggin CF, Kass PH, Mapes SM, Toth B, Lundquist ML, Pusterla N. 2012. Evaluation of the field efficacy of an avirulent live Lawsonia intracellularis vaccine in foals. Vet. J. 192:511-513.

30. Pusterla N, Vannucci FA, Guzman DSM, Mapes S, White A, DiFrancesco M, Gebhart C. 2012. Transmission of Lawsonia intracellularis to weanling foals using feces from experimentally infected rabbits. Vet. Journal. (In press).

31. Vannucci FA, Pusterla N, Mapes SM, Kelley M, Gebhart CJ. 2012. Evidence of host adaptation in Lawsonia intracellularis infections. Vet Res. 43:53-65.

32. Pusterla N., Mapes S. and Gebhart C. 2012. Further investigation of exposure to Lawsonia intracellularis in wild and feral animals captured on horse properties with equine proliferative enteropathy. Vet. J. 194:253-255.

33. Vannucci F.A., Wattanaphansak S., Gebhart C.J. 2012. An alternative method for cultivation of Lawsonia intracellularis. J. Clin. Microbiol. 50:1070-1072.

34. Pusterla N., Vannucci, F.A., Mapes S.M., Nogradi, N., Collier J.R., Hill J.A., DiFrancesco M., White A.M., Akana N.K., Simonek G., Gebhart C.J. 2012. Efficacy of an avirulent live vaccine against Lawsonia intracellularis in the prevention of proliferative enteropathy in experimentally infected weanling foals. Am. Jr. Vet. Res. 73:741-746.

35. Paradis M., Gebhart C.J., Toole D., Vessie G., Winkelman N.L., Bauer S.A., Wilson J.F., McClure C.A. 2012. Subclinical Ileitis: Diagnostic and performance parameters in a multi-dose mucosal homogenate challenge model. J. Swine Health and Prod. 20:137-141.

36. Cull CA, Paddock ZD, Nagaraja TG, Bello NB, Babcock AH, Renter DG. Efficacy of a vaccine and a direct-fed microbial against fecal shedding of Escherichia coli O157:H7 in a randomized pen-level field trial of commercial feedlot cattle. Vaccine 2012; 30(43): 6210-6205.

37. Jacob ME, Nagaraja TG. Use of direct-fed microbials as a preharvest food safety intervention in cattle. p 189-202. In: Direct-Fed Microbials and Probiotics for Animals: Science and Mechanisms of Action. T. R. Callaway and S. C. Ricke (eds.) 2012. Springer Publ., NY.

38. Bai J, Paddock ZD, Shi X, Li S, An B, Nagaraja TG.. Applicability of a Multiplex PCR to detect the seven major Shiga toxin-producing Escherichia coli based on genes that code for serogroup-specific O-antigens and major virulence factors in cattle feces. Foodborne Path Dis. 2012, 9:541-548.

39. Paddock ZD, Shi X, Bai J, Nagaraja TG. Applicability of a multiplex PCR to detect O26, O45, O103, O111, O121, O145, and O157 serogroups of Escherichia coli in cattle feces. Vet Microbiol 2012, 156:381-388.

40. Jacob ME, Shi X, An B, Nagaraja TG, Bai J. Evaluation of a multiplex real-time PCR for the quantification of Escherichia coli O157 in cattle feces. Foodborne Path Dis 2012, 9:79-85.

41. Eberhart LJ, Deringer JR, Brayton KA, Sawant AA, Besser TE, Call DR. Characterization of a novel microcin that kills enterohemorrhagic Escherichia coli O157:H7 and O26. Appl Environ Microbiol. 2012 Sep;78(18):6592-9. doi: 10.1128/AEM.01067-12. PMID: 22773653; PMCID: PMC3426703.

42. Irshad H, Cookson AL, Hotter G, Besser TE, On SL, French NP. Epidemiology of Shiga toxin-producing Escherichia coli O157 in very young calves in the North Island of New Zealand. N Z Vet J. 2012 Jan;60(1):21-6. PubMed PMID: 22175425.

43. Kudva IT, Davis MA, Griffin RW, Garren J, Murray M, John M, Hovde CJ, Calderwood SB. Polymorphic Amplified Typing Sequences and Pulsed-Field GelElectrophoresis Yield Comparable Results in the Strain Typing of a Diverse Set of Bovine Escherichia coli O157:H7 Isolates. Int J Microbiol. 2012;2012:140105. doi: 10.1155/2012/140105. Epub 2012 Aug 7. PubMed PMID: 23049559; PubMed CentralPMCID: PMC3461292.

44. Bono JL, Smith TP, Keen JE, Harhay GP, McDaneld TG, Mandrell RE, Jung WK, Besser TE, Gerner-Smidt P, Bielaszewska M, Karch H, Clawson ML. Phylogeny of Shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans. Mol Biol Evol. 2012 Aug;29(8):2047-62. Epub 2012 Feb 21. PubMed PMID: 22355013; PubMed Central PMCID: PMC3408066.

45. Shringi S, García A, Lahmers KK, Potter KA, Muthupalani S, Swennes AG, Hovde CJ, Call DR, Fox JG, Besser TE. Differential virulence of clinical and bovine-biased enterohemorrhagic Escherichia coli O157:H7 genotypes in piglet and Dutch belted rabbit models. Infect Immun. 2012 Jan;80(1):369-80. PMID: 22025512; PMCID: PMC3255674.

46. Pham T, Gao X, Tsai K, Olsen R, Wan F, Hardwidge PR. Functional differences and interactions between the E. coli type III secretion system effectors NleH1 and NleH2, Infection & Immunity, 2012 Jun;80(6):2133-40. PMID: 22451523

47. Wang X, Hardwidge, PR. Enterotoxigenic Escherichia coli (ETEC) prevents host NF-kB activation by targeting IkBa polyubiquitination, Infection & Immunity, 2012, Oct.1 [Epub ahead of print] PMID: 23027537

48. Wang X, Gao X, Hardwidge PR. Heat-labile enterotoxin-induced activation of NF-kappaB and MAPK pathways in intestinal epithelial cells impacts enterotoxigenic Escherichia coli (ETEC) adherence, Cellular Microbiology, 2012 Aug;14(8):1231-41. PMID: 22452361.

49. Zhang, W. & D. A. Sack. 2012. Progress and hurdles in the development of vaccines against enterotoxigenic Escherichia coli in humans. Expert Review of Vaccines. 11(6):677-94.

50. Ruan, X., Crupper S.C., Schultz B.D., Robertson D.C., and W. Zhang. 2012. Escherichia coli expressing enteroaggregative heat-stable toxin 1 (EAST1) did not cause an increase of cAMP or cGMP levels in cells, and no diarrhea in 5-day old gnotobiotic pigs. PLoS ONE. 7(8):e43203.

51. Duan, Q, M. Zhou, X. Zhu, Y. Yang, J. Zhu, W. Bao, S. Wu, X. Ruan, W. Zhang, and Zhu G. 2012. Flagella from F18+ Escherichia coli play a role in adhesion to pig epithelial cell lines. Mcrobiol Pathogen. In press.

52. Duan, Q., Zhou M., Zhu X., Bao W., Wu S., Ruan X., Zhang W., Yang Y., Zhu J., and Zhu G. 2012. The flagella of F18ab Escherichia coli is a virulence factor that contributes to infection in an IPEC-J2 cell model in vitro. Vet. Microbiol. 160(2012):132-140.

53. Santiago-Mateo K, M Zhao, J Lin, W. Zhang, DH Francis. 2012. Avirulent K88 (F4)+ Escherichia coli strains constructed to express modified enterotoxins protect young piglets from challenge with a virulent enterotoxigenic E. coli strain that expresses the same adhesion and enterotoxins. Vet Microbiol.159:337-342.

54. Erume J, P Wijemanne, EM Berberov SD. Kachman, DJ Oestmann, DH. Francis, RA. Moxley. 2012. Inverse relationship between heat stable enterotoxin-b induced fluid accumulation and adherence of F4ac-positive enterotoxigenic Escherichia coli in ligated jejunal loops of F4ab/ac fimbria receptor-positive swine. Vet Microbiol 161:315-324.

55. Kim Y, Lovell S, Tiew K, Mandadapu SR, Alliston KR, Battaile KP, Groutas WC, Chang K. Novel Broad-Spectrum Antivirals against 3C or 3C-like proteases of Picornaviruses, Noroviruses and Coronaviruses. Journal of Virology, 2012, 86(21):11754-62.

56. Kim Y, George D, Prior AM, Prasain K, Hao S, Le DD, Hua DH, Chang K. Novel triacsin C analogs as potential antivirals against rotavirus infections. Eur J Med Chem, 2012, 50:311-8.

57. Esseili MA, Wang Q, Zhang Z, Saif LJ. Internalization of sapovirus, a surrogate for norovirus, in romaine lettuce and the effect of lettuce latex on virus infectivity. Appl Environ Microbiol. 2012. 78:6271-9

58. Esseili MA, Wang Q, Saif LJ. 2012. Binding of human GII.4 norovirus virus-like particles to carbohydrates of romaine lettuce leaf cell wall materials. Appl Environ Microbiol. 78:786-94.

59. Jung, K., Q. Wang, Y. Kim, K. Scheuer, Z. Zhang, Q. Shen, K-O. Chang, and L. J. Saif. 2012. The effects of simvastatin or interferon-± on infectivity of human norovirus using a gnotobiotic pig model for the study of antivirals. PLoS One 7:e41619.

60. Wang, Q., K. Scheuer, Z. Ahang, W. A. Gebreyes, B. Z. Molla, A. E. Hoet, and L. J. Saif. 2011. Characterization and prevalence of a new porcine Calicivirus in Swine, United States. Emerging infectious diseases 17:1103-1106.

61. Wang Q., Z. Zhang and L.J. Saif. 2012. A cultivable porcine sapovirus surrogate for human caliciviruses: stability and attachment to lettuce. Appl Environ Microbiol. 78:3932-40.

62. Harada S., Oka T., Tokuoka E., Kiyota N., Nishimura K., Shimada Y., Ueno T., Ikezawa S., Wakita T., Wang Q. Saif L. J., Katayama K. 2012. A confirmation of sapovirus re-infection gastroenteritis caseswith different genogroups and genetic shifts in the evolving sapovirus genotypes, 2002-2011. Arch Virol 157:19992003.

63. Amimo, J.O., Vlasova, A.N., Saif, L.J. 2013. Prevalence, genetic heterogeneity and identification of a potential new VP4 genotype of porcine group c rotaviruses in nursing and weaned piglets in Ohio, USA. Submitted to Veterinary Microbiology.

64. Khaitsa, M.L. and Dawn Doetkott. 2012 (Accepted in August 2011). Antimicrobial Drug Resistance and Molecular Characterization of Salmonella Isolated from Domestic Animals, Humans and Meat Products, In: Salmonella - A Dangerous Foodborne Pathogen, Barakat S. M. Mahmoud (Ed.), ISBN: 978-953-307-782-6.

65. Michael Muleme, Robert Barigye, Margaret L. Khaitsa, Eugene Berry, Anthony W. Wamono, Chrisostom Ayebazibwe. 2012. Effectiveness of vaccines and vaccination programs for the control of foot-and-mouth disease in Uganda, 20012010. Trop. Ani. Health and Prod. September 2012.

66. Stella Opendi Sasanya, Susan Olet, Robert Littlefield, Charles L. Stoltenow and Margaret L. Khaitsa. 2012. Spatial-temporal Distribution of the 2007 Melamine Associated Nephrotoxic Renal failure among Pets and Factors Associated with Pet Survival. Journal of Food Protection Trends. In Press.

67. George S, K Circle, S Lindblom, S Vilain, AJM Rosa, D Francis, V Brözel1, and RS Kaushik. 2012. Assessment of Toll-like Receptors in the Ileum of Weanling Pigs- Responses to Feed Antibiotic Chlortetracycline and Gnotobiotic Conditions. Clin Cellular Immunol. Epub ahead of print.

68. Wang, Z., X. Zeng, Y. Mo, K. Smith, J. Lin. 2012. Identification and characterization of a bile salt hydrolase for developing novel alternatives to antibiotic growth promoters. Applied and Environmental Microbiology 78:8795-8802

69. Lin, J., A.A. Hunkapillar, A.C. Layton, Y. Chang, K.R. Robbins. 2012. Response of intestinal microbiota to antibiotic growth promoters in chickens. Foodborne Pathogens and Diseases (In Press)

70. Hoang, K., Y. Wang, and J. Lin. 2012. Identification of genetic loci required for Campylobacter resistance to fowlicidin-1, a chicken host defense peptide. Frontiers in Cellular and Infection Microbiology 2:32. Doi:10.3389/fcimb.2012.00032

71. Zhou, W., Y. Wang, and J. Lin. 2012. Functional cloning and characterization of antibiotic resistance genes from chicken gut microbiome. Applied and Environmental Microbiology. 78:3028-3032

72. Cummings KJ*, Warnick LD, Davis MA, Eckmann K, Gröhn YT, Hoelzer K, MacDonald JK, Root TP, Siler JD, McGuire SM, Wiedmann M, Wright EM, Zansky SM, Besser TE. Farm animal contact is a risk factor for salmonellosis caused by bovine-associated subtypes. (Accepted, Emerg Inf Dis).

73. Morales CA, Guard J, Sanchez-Ingunza R, Shah DH, Harrison M. Virulence and metabolic characteristics of Salmonella enterica serovar enteritidis strains with different sefD variants in hens. Appl Environ Microbiol. 2012 Sep;78(18):6405-12. doi: 10.1128/AEM.00852-12. Epub 2012 Jun 22. PubMed PMID: 22729535; PubMed Central PMCID: PMC3426706.

74. Neal-McKinney JM, Lu X, Duong T, Larson CL, Call DR, Shah DH, Konkel ME. Production of organic acids by probiotic lactobacilli can be used to reduce pathogen load in poultry. PLoS One. 2012;7(9):e43928. doi: 10.1371/journal.pone.0043928. Epub 2012 Sep 4. PMID: 22962594; PMCID: PMC3433458.

75. Shah DH, Casavant C, Hawley Q, Addwebi T, Call DR, Guard J. Salmonella Enteritidis strains from poultry exhibit differential responses to acid stress, oxidative stress, and survival in the egg albumen. Foodborne Pathog Dis. 2012 Mar;9(3):258-64. PMID: 22304629; PMCID: PMC3326446.

76. Shah DH, Zhou X, Kim HY, Call DR, Guard J. Transposon Mutagenesis of Salmonella enterica Serovar Enteritidis Identifies Genes That Contribute to Invasiveness in Human and Chicken Cells and Survival in Egg Albumen. Infect Immun. 2012 Dec;80(12):4203-15. PMID: 22988017; PMCID: PMC3497420.

77. Subbiah M, Shah DH, Besser TE, Ullman JL, Call DR. Urine from Treated Cattle Drives Selection for Cephalosporin Resistant Escherichia coli in Soil. PLoS One. 2012;7(11):e48919. doi: 10.1371/journal.pone.0048919. PMID: 23145021; PMCID: PMC3492140.

78. Morrison CM, Dial SM, Day WA Jr, Joens LA. Investigations of Salmonella enterica serovar newport infections of oysters by using immunohistochemistry and knockout mutagenesis. Appl Environ Microbiol. 2012 Apr;78(8):2867-73. Epub 2012 Feb 3.

79. Li M, Bauer LL, Chen X, Wang M, Kuhlenschmidt TB, Kuhlenschmidt MS, Fahey GC, Jr, and Donovan SM (2012) Microbial Composition and In Vitro Oligosaccharides and Prebiotics Differ between Formula-Fed and Sow-Reared Piglets. J. Nutrition 142:1-10.

80. Fuller KL, Kuhlenschmidt TB, Kuhlenschmidt MS, Jimenez-Flores R, and Donovan SM. (2012) Milk Fat Globule Membrane Isolated from Buttermilk or Cheese Whey and their Lipid Component Inhibit Infectivity of Rotavirus In Vitro. J. Dairy Science (in press).

81. Li, M, Monaco MH, Wang, M, Comstock SS, Kuhlenschmidt TB, Kuhlenschmidt MS, Donovan SM, (2013) Human milk oligosaccharides and prebiotics reduce the duration of rotavirus-induced diarrhea in piglets. JPGN (in press).

82. Lin, J., K. S. Mateo, M. Zhao, A. K. Erickson, N. Garcia, D. He, R. A. Moxley, and D. H. Francis. 2012. Protection of piglets against enteric colibacillosis by intranasal immunization with K88ac (F4ac) fimbriae and heat labile enterotoxin of Escherichia coli. Vet. Microbiol. (in press, VETMIC-5932)

83. Shippy, D. C. and A. A. Fadl. 2012. Immunological characterization of a gidA mutant strain of Salmonella for potential use in a live-attenuated vaccine. BMC Microbiology (Accepted for publication).

02/12/2014

A. Publications
" Jung, K., Scheuer, K., Zhang, Z., Wang, Q.H., Saif, L.J. Pathogenesis of GIII.2 bovine norovirus, CV186-OH/00/US strain in gnotobiotic calves. Veterinary Microbiology (In press). 2013.
" Zufan Sisay, Qiuhong Wang, Tomoichiro Oka and Linda Saif. 2013. Prevalence and molecular characterization of porcine enteric caliciviruses and first detection of porcine kobuviruses in US Swine. Arch Virol 158:1583-8.
" Kelly A. Scheuer, Tomoichiro Oka, Armando E. Hoet, Wondwossen A. Gebreyes, Bayleyegn Z. Molla, Linda J. Saif, and Qiuhong Wang. 2013. Prevalence of Porcine Noroviruses, Molecular Characterization of Emerging Porcine Sapoviruses from Finisher Swine in the United States, and Unified Classification Scheme for Sapoviruses. J Clin Microbiol. 51:2344-53.
" Tomoichiro Oka, Linda J. Saif, Qiuhong Wang. 2013. Complete Genome Sequence of the first genogroup II genotype 18 porcine norovirus strain QW125. Genome Announcement 1: e00344-13.
" Sayaka Takanashi, Linda J. Saif, John H. Hughes, Tea Meulia, Kwonil Jung, Kelly A. Scheuer, Qiuhong Wang. 2013. Failure of propagation of human norovirus in intestinal epithelial cells with microvilli grown in three-dimensional cultures. Arch Virol [published online Aug. 23, 2013].
" Chattha, K.S., Kandasamy, S., Vlasova, A.N., Saif, L.J. Vitamin A deficiency impairs adaptive B and T cell responses to a monovalent attenuated human rotavirus vaccine and virulent human rotavirus challenge in a gnotobiotic piglet model. 2013. Plos One (in press).
" Vlasova, A.N., Chattha, K.S., Kandasamy, S., Rajashekara, G., Saif, L.J. 2013. Lactobacillus rhamnosus (GG) and Bifidobacterium lactis (Bb12) colonization promotes intestinal homeostasis by modulating innate immune responses to human rotavirus in neonatal gnotobiotic pigs; Plos One, 8(10):e76962.
" Chattha, K.S., Vlasova, A.N., Kandasamy, S., Liu, Z., Rajashekara, G., Saif, L.J. 2013. Divergent immunomodulating effects of probiotics on T cell responses to oral attenuated human rotavirus vaccine and virulent human rotavirus infection in a neonatal gnotobiotic piglet disease model. J Immunol.; 191(5):2446-56.
" Chattha KS, Vlasova AN, Kandasamy S, Esseili MA, Siegismund C, Rajashekara G, Saif LJ.. 2013. Probiotics and colostrum/milk differentially affect neonatal B cell responses to oral rotavirus vaccine. Vaccine. 2013 Apr 8;31(15):1916-23. PMID: 23453730
" Vlasova, A.N., Chattha, K.S., Siegismund, C.S., Kandasamy, S., Saif, L.J. 2013. Prenatally acquired vitamin A deficiency alters innate immune responses to human rotavirus in gnotobiotic pigs. J Immunol.; 190(9):4742-53.
" Vega, C.G, Bok, M., Vlasova, A.N., Chattha, K.S., Gómez-Sebastián, S., Nuñez, C., Alvarado, C., Lasa, R., Escribano, J.M., Garaicoechea, L.L., Fernández, F.M., Wigdorovitz, A., Saif, L.J., Parreño, V.G. 2013. Recombinant Monovalent Llama-Derived Antibody Fragments (VHH) to rotavirus VP6 Protect Neonatal Gnotobiotic Piglets Against Human Rotavirus Induced Diarrhea. Plos Pathogens, 9(5): e1003334.
" Kassem II, Chandrashekhar K, Rajashekara G. 2013. Of energy and survival incognito: A relationship between viable but non-culturable cells (VBNC) formation and inorganic polyphosphate and formate metabolism in Campylobacter jejuni. Frontiers in Microbiology. Vol 4, No. 00183, PMID:23847606; PMCID: PMC3705167
" Annamalai T, Pina-Mimbela R, Kumar A, Binjawadagi B, Liu Z, Renukaradhya GJ, Rajashekara G. 2013. Evaluation of nanoparticle encapsulated OMPs for the control of Campylobacter jejuni colonization in chickens. Poult Sci. Aug;92 (8):2201-11. PMID: 23873570
" Drozd M, Merrick NN, Sanad YM, Dick LK, Dick WA, Rajashekara G. 2013. Evaluating the occurrence of host-specific , general fecal indicators, and bacterial pathogens in a mixed-use watershed. J Environ Qual. May-Jun;42(3):713-25. PMID: 23673938
" Sanad YM, Closs G Jr, Kumar A, LeJeune JT, Rajashekara G.. 2013. Molecular Epidemiology and Public Health Relevance of Campylobacter Isolated from Dairy Cattle and European Starlings in Ohio, USA. Foodborne Pathogens and Disease. Mar;10(3):229-36. doi: 10.1089/fpd.2012.1293. Epub 2012 Dec 21. PMID: 23259503. Dec 21.
" Wu Z, Sahin O, Shen Z, Liu P, Miller WG, and Zhang Q. 2013. Multi-omics Approaches to Deciphering a Hypervirulent Strain of Campylobacter jejuni. Genome Biol Evol. 5(11):2217-30. doi: 10.1093/gbe/evt172. PMID: 24201373.
" Shen Z, Han J, Wang Y, Sahin O, and Zhang Q. 2013. The contribution of ArsB to arsenic resistance in Campylobacter jejuni. PLoS ONE. 8 (3):e58894. PMID: 23554953.
" Oh E, Zhang Q, and Jeon B. 2013. Target optimization for peptide nucleic acid (PNA)-mediated antisense inhibition of the CmeABC multidrug efflux pump in Campylobacter jejuni. J Antimicrob Chemother; doi:10.1093/jac/dkt381. PMID: 24084637.
" Mu Y, Shen Z, Jeon B, Dai L, and Zhang Q. 2013. Synergistic effects of anti-CmeA and anti-CmeB peptide nucleic acids on sensitizing Campylobacter jejuni to antibiotics. Antimicrob Agents Chemother. 57:4575-7. PMID: 23817373.
" Xia Q, Muraoka WT, Shen Z, Sahin O, Wang H, Wu Z, Liu P, and Zhang Q. 2013. Adaptive mechanisms of Campylobacter jejuni to erythromycin treatment. BMC Microbiol. 13:133. doi: 10.1186/1471-2180-13-133. PMID: 23767761.
" Burrough, Eric, Samantha Terhorst, Orhan Sahin, Qijing Zhang. 2013. Prevalence of Campylobacter spp. relative to other enteric pathogens in grow-finish pigs with diarrhea. Anaerobe. pii: S1075-9964(13)00094-2. doi: 10.1016/j.anaerobe.2013.06.004.
" Hao H, Yuan Z, Shen Z, Han J, Sahin O, Liu P, Zhang Q. 2013. Mutational and transcriptomic changes involved in the development of macrolide resistance in Campylobacter jejuni. Antimicrob Agents Chemother. ;57(3):1369-78. PMID: 23274667.
" Qin, Shangshang; Wang, Yang; Zhang, Qijing; Zhang, Maojun; Deng, Fengru; Shen, Zhangqi; Wu, Congming; Wang, Shaolin; Zhang, Jianzhong; Shen, Jianzhong. 2013. Report of ribosomal RNA methylase gene erm(B) in multidrug resistant Campylobacter coli. J Antimicrob. Chemother. (In press).
" John P. Jerome, Jeffrey E. Barrick, Hayhung Y. Kim, Brian D. Klahn, C. Titus Brown, Linda S. Mansfield. Reversible motility mutations and parallel Ã54 loss during experimental evolution of Campylobacter jejuni. In review at Molecular Biology and Evolution.
" Jerome, J.P. and Mansfield, LS. 2013 Within-host evolution of Campylobacter jejuni, In "Campylobacter Ecology and Evolution", Sheppard, S.K. ed, Sanger Centre, England, pp. 1-25.
" Samuelson D.R., Eucker T.P., Bell J.A., Dybas L.A., Mansfield L.S., Konkel M.E. 2013. The Campylobacter jejuni CiaD effector protein activates MAP 1 kinase signaling pathways and is required for the development of acute disease. Cell Communication and Signaling 2013, 11:79, doi:10.1186/1478-811X-11-79.
" Malik A., Sharma D., St. Charles J.L., Dybas L.A., Mansfield L.S. 2013. Contrasting immune responses mediate Campylobacter jejuni induced colitis and autoimmunity, Nature Mucosal immunology, In press.
" Zeng, X., F. Xu, and J. Lin. 2013. Specific TonB-ExbB-ExbD energy transduction systems required for ferric enterobactin acquisition in Campylobacter. FEMS Microbiology Letter. 347(1):83-91
" Zeng, X., F. Xu, Y. Mo, and J. Lin. 2013. Identification and characterization of a periplasmic trilactone esterase, Cee, revealed a unique pathway of ferric enterobactin acquisition in Campylobacter. Molecular Microbiology. 87(3): 594-608.
" Díaz-Sánchez, S., S. Sánchez, S. Herrera-León, C. Porrero, J. Blanco, G. Dahbi, J. E. Blanco, A. Mora, R. Mateo, I, Hanning and D. Vidal. 2013. Prevalence of Shiga toxin-producing Escherichia coli, Salmonella spp. and Campylobacter spp. in large game animals intended for consumption: relationship with management practices and livestock influence. Vet. Micro. 163(3-4):274-81.
" Kumar, G., I. Hanning and M. Slavik. 2013. Influence of acid-adaptation on adhesion and invasion of INT 407 cells by Campylobacter jejuni. Foodborne Pathogens and Disease. ahead of print. doi:10.1089/fpd.2013.1544.
"
" Pendleton, S., D. Biswas, S.C. Ricke and I. Hanning. 2013. Evaluation of Whole Genome Sequencing as a Genotyping Tool for Campylobacter jejuni by Comparison with Pulsed-Field Gel Electrophoresis and flaA typing. Poultry Sci. 92:573-58
" Zeng, X., and J. Lin. 2013. Beta-lactamase induction and cell wall metabolism in Gram-negative bacteria. Frontiers in Antimicrobials, Resistance and Chemotherapy. (Review) Vol. 4. Article 128. doi:10.3389/fmicb.2013.00128
" Pu, Xiao-Ying, Qijing Zhang, Jing-Cao Pan, Zhangqi Shen, Wei Zhang. 2013. Spontaneous mutation frequency and molecular mechanisms of Shigella flexneri fluoroquinolone resistance under antibiotic selective stress. World J Microbiol Biotechnol. 29(2):365-71.
" Liu, Yang, Yang Wang, Stefan Schwarz, Yun Li, Zhangqi Shen, Qijing Zhang, Congming Wu, and Jianzhong Shen. 2013. Transferable Multiresistance Plasmids Carrying cfr in Enterococcus spp. from Swine and Farm Environment. Antimicrob. Agents Chemother. 57(1):42-8.
" Gehring, Barnett, DebRoy, D'Souza, Eaker, Fratamico, Gillespie, Hegde, Jones, J. Lin, Oliver, Paoli, Perera, Uknalis. 2013. A High-Throughput Antibody-Based Microarray Typing Platform. Sensors. 13:5737-5748.
" Xu, F., C. Wu, and J. Lin. 2013. Microbial endocrinology: revealing the mechanisms of signaling language during the interactions between microorganism and host. (Review) Acta Microbiologica Sinica. 53(9):901-907.
" Lin, J., A.A. Hunkapillar, A.C. Layton, Y. Chang, K.R. Robbins. 2013. Response of intestinal microbiota to antibiotic growth promoters in chickens. Foodborne Pathogens and Diseases. 10(4): 331-337.
" Ricke, S. and I. Hanning. 2013. Food Safety Applications of Nanoparticles. In Nanotechnology Safety. 115-125.
" Silfrany, RO., R.E. Caba, F. Solís de los Santos, and I. Hanning. 2013. Detection of Quinolones in Poultry Meat Obtained from Retail Centers in the Santiago Province, the Dominican Republic. Journal of Food Protection. 76:190-369
" Park SH, I. Hanning, W. Gilbert, M. Munro, L. Devareddy and S. Ricke. 2013. Feeding Mice Aged and Fresh Blackberries Powder Supplements Result in Shifts in the Gastrointestinal Microflora. Food Bioscience 1:66-72.
" Diaz, S., S. Pendleton, I. Hanning, and D. DSouza. 2013. Next-Generation sequencing: applications for poultry production and food safety. Poultry Science. 92:562-572
" Park, SH., I. Hanning, A. Perrota, BJ Bench, E. Alm, and SC Ricke. 2013. Modifying the gastrointestinal ecology in alternatively raised poultry and the potential for molecular and metabolomic assessment. Poult Sci 92(2):546-61.
" Hardy, B., N. Crilly, S. Pendleton, A. Andino, A. Wallis, N. Zhang, and I. Hanning. 2013. Impact of Rearing Conditions on the Microbiological Quality of Retail Poultry Meat. J Food Sci. 78:M1232-1235.
" Andino, A., S. Pendleton, N. Zhang, W. Chen, F. Critzer, and I. Hanning. 2013. Survival and virulence of Salmonella spp. in poultry feed in strain and serovar dependent. Poult Sci. Accepted for publication
" Gonzalez-Gil, F., S. Diaz-Sanchez, S. Pendleton, A. Andino, N. Zhang, C. Yard, N. Crilly, F. Harte, and I. Hanning. 2013. Yerba Mate Enhances Probiotic Bacteria Growth In Vitro but as a Feed Additive does not Reduce Salmonella Enteritidis Colonization In Vivo. Poult Sci. Accepted for publication.
" Lin, J., K. S. Mateo, M. Zhao, A. K. Erickson, N. Garcia, D. He, R. A. Moxley, and D. H. Francis. 2013. Protection of piglets against enteric colibacillosis by intranasal immunization with K88ac (F4ac) fimbriae and heat labile enterotoxin of Escherichia coli. Vet. Microbiol. 162:731-739.
" Berghaus RD, Thayer SG, Law BF, Mild RM, Hofacre CL, Singer RS. Enumeration of Salmonella and Campylobacter spp. in environmental farm samples and processing plant carcass rinses from commercial broiler chicken flocks. Appl Environ Microbiol. 2013 Jul;79(13):4106-14. doi: 10.1128/AEM.00836-13. Epub 2013 Apr 26.
" Armstrong, A, Curtiss R, Roland K, Law B. Use of a Recombinant Attenuated Salmonella Typhimurium Vector Vaccine for the Reduction of Campylobacter jejuni in Broiler Chickens. In Abstracts of posters and oral presentations from the 17th International Workshop on Campylobacter, Helicobacter and Related Organisms,15-19th September 2013. University of Aberdeen, 2013. J Med Microbiol.
" Chiok KL, Addwebi T, Guard J, Shah DH. Dimethyl adenosine transferase (KsgA)deficiency in Salmonella Enteritidis confers susceptibility to high osmolarity and virulence attenuation in chickens. Appl Environ Microbiol. 2013 Oct 11. [Epub ahead of print] PubMed PMID: 24123731.
" Crespo R, Garner MM, Hopkins SG, Shah DH. Outbreak of Listeria monocytogenes in an urban poultry flock. BMC Vet Res. 2013 Oct 11;9(1):204. [Epub ahead of print] PubMed PMID: 24119838.
" Al-Adwani SR, Crespo R, Shah DH. Production and evaluation of chicken egg-yolk-derived antibodies against Campylobacter jejuni colonization-associated proteins. Foodborne Pathog Dis. 2013 Jul;10(7):624-31.
" Campioni F, Davis M, Medeiros MI, Falcão JP, Shah DH. MLVA typing reveals higher genetic homogeneity among S. Enteritidis strains isolated from food,humans and chickens in Brazil in comparison to the North American strains. Int J Food Microbiol. 2013 Mar 15;162(2):174-81.
" Jaros P, Cookson AL, Campbell DM, Besser TE, Shringi S, Mackereth GF, Lim E, Lopez L, Dufour M, Marshall JC, Baker MG, Hathaway S, Prattley DJ, French NP. A prospective case-control and molecular epidemiological study of human cases of Shiga toxin-producing Escherichia coli in New Zealand. BMC Infect Dis. 2013 Sep 30;13:450. doi: 10.1186/1471-2334-13-450. PubMed PMID: 24079470.
" Jung WK, Bono JL, Clawson ML, Leopold SR, Shringi S, Besser TE. Lineage and Genogroup-Defining Single Nucleotide Polymorphisms of Escherichia coli O157:H7. Appl Environ Microbiol. 2013 Nov;79(22):7036-41. doi: 10.1128/AEM.02173-13. Epub 2013 Sep 6. PubMed PMID: 24014531; PubMed Central PMCID: PMC3811523.
" Mellor GE, Besser TE, Davis MA, Beavis B, Jung W, Smith HV, Jennison AV, Doyle CJ, Chandry PS, Gobius KS, Fegan N. Multilocus genotype analysis of Escherichia coli O157 isolates from Australia and the United States provides evidence of geographic divergence. Appl Environ Microbiol. 2013 Aug;79(16):5050-8. doi: 10.1128/AEM.01525-13. Epub 2013 Jun 14. PubMed PMID: 23770913; PubMed Central PMCID: PMC3754714.
" Shringi S, Schmidt C, Katherine K, Brayton KA, Hancock DD, Besser TE. Carriage of stx2a differentiates clinical and bovine-biased strains of Escherichia coli O157. PLoS One. 2012;7(12):e51572. doi: 10.1371/journal.pone.0051572. Epub 2012 Dec 11. PubMed PMID: 23240045; PubMed Central PMCID: PMC3519850.
" Davis MA, Moore DL, Baker KN, French NP, Patnode M, Hensley J, Macdonald K, Besser TE. Risk factors for campylobacteriosis in two Washington State counties with high numbers of dairy farms. J Clin Microbiol. 2013 Dec;51(12):3921-7. doi: 10.1128/JCM.01433-13. Epub 2013 Sep 11. PubMed PMID: 24025908.
" Marthaler D, Rossow K, Culhane M, Collins J, Goyal S, Ciarlet M, Matthijnssens J. 2013. Identification, phylogenetic analysis and classification of porcine group C rotavirus VP7 sequences from the United States and Canada. Virology. 2013:446(1-2):189-98. doi: 10.1016/j.virol.2013.08.001. PMID: 24074581
" Marthaler D, Jiang Y, Otterson T, Goyal S, Rossow K, Collins J. 2013. Complete Genome Sequence of Porcine Epidemic Diarrhea Virus Strain USA/Colorado/2013 from the United States. Genome Announc. 2013:1(4). doi:pii: e00555-13. 10.1128/genomeA.00555-13. PMID: 23929470
" Vannucci FA, Kelley, MR, Gebhart, CJ. 2013. Comparative genome sequencing identifies a prophage-associated genomic isolated linked to host adaptation of Lawsonia intracellularis infections. Vet. Res. 44:49-58.
" Fuller KL, Kuhlenschmidt TB, Kuhlenschmidt MS, Jimenez-Flores R, and Donovan SM. (2013) Milk Fat Globule Membrane Isolated from Buttermilk or Cheese Whey and their Lipid Component Inhibit Infectivity of Rotavirus In Vitro. J. Dairy Science 2013 96(6):3488-97
" Hester S, Chen X, Li M, Monaco M, Comstock S, Kuhlenschmidt T, Kuhlenschmidt, MS and Donovan S. (2013) Human milk oligosaccharides inhibit rotavirus infectivity in vitro and in acutely infected piglets. British Journal of Nutrition 110:1233-1242
" Liu Y, Zhang C, Hu D, Kuhlenschmidt, MS, Kuhlenschmidt TB, Mylon SE, Kong R, Bhargava R, Nguyen T H (2013) Role of collector alternating charged patches on transport of Cryptosporidium parvum oocysts in a patchwise charged heterogeneous micromodel. Environ Sci Technol 47 2670-8.
" Paul C. Davidson, Theresa B. Kuhlenschmidt, Rabin Bhattarai, Prasanta K. Kalita, Mark S. Kuhlenschmidt (2013) Investigation of Rotavirus Survival in Different Soil Fractions and Temperature Conditions. Journal of Environmental Protection 4: 1-9
" McLaughlin, S. J., Kalita, P. K. and Kuhlenschmidt, M. S. (2013) Fate of Cryptosporidium parvum oocysts within soil, water, and Plant environment. Journal of Environmental Management 131: 121-128
" Shippy, D. C., N. M. Eakley, C. T. Lauhon, P. N. Bochsler and A. A. Fadl. 2013. Virulence characteristics of Salmonella following deletion of genes encoding for the tRNA modification enzymes GidA and MnmE. Microbial Pathogenesis. 57: 1-9.
" Erume, J., P. Wijemanne, E. M. Berberov, S. D. Kachman, D. J. Oestmann, D. H. Francis, and R. A. Moxley. 2013. Inverse relationship between heat stable enterotoxin-b induced fluid accumulation and adherence of F4ac-positive enterotoxigenic Escherichia coli in ligated jejunal loops of F4ab/ac fimbria receptor-positive swine. Vet. Microbiol. 161:315-324.
" Fekete, P. J., K. S. Mateo, W. Zhang, R. A. Moxley, R. S. Kaushik, and D. H. Francis. 2013. Both enzymatic and non-enzymatic properties of heat-labile enterotoxin are responsible for LT-enhanced adherence of enterotoxigenic Escherichia coli to porcine IPEC-J2 cells. Veterinary Microbiology 164:330-335.
" Vogstad, A. R., R. A. Moxley, G. E. Erickson, T. J. Klopfenstein, and D. R. Smith. 2013. Stochastic simulation model comparing distributions of STEC O157 fecal shedding prevalence between cattle vaccinated with type III secreted vaccines and non-vaccinated cattle. Zoonoses Public Health (epub Jul 5. doi:10.1111/zph.12069. PMID:23826923)
" Vogstad, A. R., R. A. Moxley, G. E. Erickson, T. J. Klopfenstein, and D. R. Smith. 2013. Assessment of heterogeneity of efficacy of a three-dose regimen of a type III secreted protein vaccine for reducing STEC O157 in feces of feedlot cattle. Foodborne Pathog. Dis. 10:678-683.
" Paddock ZD, Renter DG, Cull CA, Paddock ZD, Bai J, Nagaraja TG. Escherichia coli O26 in feedlot cattle: Fecal prevalence, isolation, characterization and effects of an E. coli O157 vaccine and a direct-fed microbial. Foodborne Pathog Dis. in press.
" Smith R, Sanderson MW, Jones R, Renter DG, Larson RL. Economic risk analysis model for Bovine Viral Diarrhea Virus biosecurity in cow-calf herds. Prev Vet Med. in press.
" Jacob M, Bai J, Renter DG, Rogers A, Shi X, Nagaraja TG. Comparing real-time and conventional PCR to culture-based methods for detecting and quantifying Escherichia coli O157 in cattle feces. J Food Prot. in press.
" Cernicchiaro N, Cull CA, Paddock ZD, Shi X, Bai J, Nagaraja TG, Renter DG. Prevalence of Shiga toxin-producing Escherichia coli and associated virulence genes in feces of commercial feedlot cattle. Foodborne Pathog Dis. 2013; 10(10): 835-841.
" Paddock ZD, Bai J, Shi X, Renter DG, Nagaraja TG. Detection of Escherichia coli O104 in the feces of feedlot cattle by a multiplex PCR assay designed to target major genetic traits of the virulent hybrid strain responsible for the 2011 German outbreak. Appl Environ Microbiol. 2013; 79(11): 3522-3525.
" Paddock ZD, Renter DG, Shi X, Krehbiel C, DeBey B, Nagaraja TG. Effects of feeding dried distillers grains with supplemental starch on fecal shedding of Escherichia coli O157:H7 in experimentally-inoculated steers. J Anim Sci. 2013; 91(3): 1362-1370.
" Daisuke Takahashi, Yunjeong Kim, Scott Lovell, Om Prakash, William C Groutas and Kyeong-Ok Chang, Structural and Inhibitor Studies of Norovirus 3C-like Proteases. 2013, Virus Research Sep 17. [Epub ahead of print]
" Yunjeong Kim, William C.Groutas, and Kyeong-Ok Chang. 2013. Potent Inhibition of Feline Coronaviruses with Peptidyl Compounds Targeting Coronavirus 3C-like Protease. Antiviral Res. 97(2):161-8.
" Gao X, Wang X, Pham TH, Feuerbacher LA, Lubos ML, Huang M, Olsen R, Mushegian A, Slawson C, Hardwidge PR. NleB, a bacterial effector with glycosyltransferase activity, targets GAPDH function to inhibit NF-kB activation, Cell Host & Microbe, 2013, Jan;13(1):87-99. PMID: 23332158
" Zhou M, Duan Q, Zhu X, Guo Z, Li Y, Hardwidge PR, Zhu G. Both flagella and F4 fimbriae contribute to F4ac+ Enterotoxigenic Escherichia coli adherence to IPEC-J2 cells, Veterinary Research, 2013 May 13;44(1):30. PMID: 23668601
" Olsen RL, Echtenkamp F, Cheranova D, Deng W, Finlay BB, Hardwidge PR. The enterohemorrhagic Escherichia coli effector protein NleF binds mammalian Tmp21, Veterinary Microbiology, 2013 May 31;164(1-2):164-70. PMID: 23434013
" Yang Y, Yao F, Zhou M, Zhu J, Zhang X, Bao W, Wu S, Hardwidge PR, Zhu G. F18ab Escherichia coli flagella expression is regulated by acyl-homoserine lactone and contributes to bacterial virulence, Veterinary Microbiology, 2013 Aug 30: 165(3-4):378-83. PMID: 23693029
" Duan Q, Zhou M, Liang H, Zhu X, Guo Z, Li Y, Hardwidge PR, Zhu G. Contribution of flagellin subunit FliC to piglet epithelial cell invasion by F18ab E. coli, Veterinary Microbiology, 2013 Sep 27; 166(1-2):220-4. PMID: 23746569
" Meng X, Meng X, Zhu C, Wang H, Wang J, Nie J, Hardwidge PR, Zhu G. The RNA chaperone Hfq regulates expression of fimbrial related genes and virulence of Salmonella enteritidis, FEMS Microbiology Letters, 2013 Sep;346(2):90-6. PMID: 23808344
" Pham T, Gao X, Singh G, Hardwidge PR. Escherichia coli virulence protein NleH1 Interaction with the v-crk Sarcoma Virus CT10 Oncogene-Like Protein (CRKL) Governs NleH1
Inhibition of the Ribosomal Protein S3 (RPS3)/NF-kappaB Pathway, Journal of Biological Chemistry, 2013, in press
" Zhou M, Guo Z, Yang Y, Duan Q, Zhang Q, Yao F, Zhang X, Hardwidge PR, Zhu G, Flagellin and F4 fimbriae have Opposite Effects on Biofilm Formation and Quorum Sensing in F4ac+ Enterotoxigenic Escherichia coli, Veterinary Microbiology, 2013, in press
" Rüter C, Hardwidge PR. Drugs from Bugs: Bacterial effector proteins as promising biological (immune-) therapeutics, FEMS Microbiology Letters, 2013, in press

Lay press
" Mansfield, LS, 2013. Gut microbes may provide targets for food-borne diseases. AgBioResearch Legislative Report on Food Safety and Security, MSU AgBioresearch & MSU Extension Legislative Report 2012-13, p. 19.
Book Chapters
" Zeng, X., and J. Lin. 2013. Siderophore-mediated iron acquisition for Campylobacter infection. Chapter 10. Pp111- 124 In S. Sheppard and G. Meric (eds), Campylobacter Ecology and Evolution. Horizon Scientific Press, Hethersett, U.K.
" Moxley, R. A. 2013. Chapter 6, Enterobacteriaceae, pp. 53-61. In, McVey, D. S., M. Kennedy, and M. M. Chengappa (editors), Veterinary Microbiology, 3rd Ed., Wiley-Blackwell, Hoboken, NJ.
" Moxley, R. A. 2013. Chapter 7, Enterobacteriaceae: Escherichia, pp. 62-74. In, McVey, D. S., M. Kennedy, and M. M. Chengappa (editors), Veterinary Microbiology, 3rd Ed., Wiley-Blackwell, Hoboken, NJ.
" Moxley, R. A. 2013. Chapter 8, Enterobacteriaceae: Salmonella, pp. 75-84. In, McVey, D. S., M. Kennedy, and M. M. Chengappa (editors), Veterinary Microbiology, 3rd Ed., Wiley-Blackwell, Hoboken, NJ.
" Moxley, R. A. 2013. Chapter 9, Enterobacteriaceae: Yersinia, pp. 85-94. In, McVey, D. S., M. Kennedy, and M. M. Chengappa (editors), Veterinary Microbiology, 3rd Ed., Wiley-Blackwell, Hoboken, NJ.
" Moxley, R. A. 2013. Chapter 10, Enterobacteriaceae: Shigella, 95-100. In, McVey, D. S., M. Kennedy, and M. M. Chengappa (editors), Veterinary Microbiology, 3rd Ed., Wiley-Blackwell, Hoboken, NJ.

01/09/2015

Peer-reviewed journal articles

• Zuowei Wu, Rachel Sippy, Orhan Sahin, Paul Plummer, Ana Vidal, Diane Newell, and Qijing Zhang. 2014. Genetic diversity and antimicrobial susceptibility of Campylobacter jejuni isolates associated with sheep abortion in the United States and the Great Britain. J Clin Micro, 52:1853-61. PMID: 24648552.

• Zuowei Wu, Orhan Sahin, Fei Wang, Qijing Zhang. 2014. Proteomic identification of immunodominant membrane-related antigens in Campylobacter jejuni associated with sheep abortion. Journal of Proteomics, 99:111-122. PMID: 24487037.

• Orhan Sahin, Eric R. Burrough1, Nada Pavlovic, Tim S. Frana, Darin M. Madson, and Qijing Zhang. 2014. Campylobacter jejuni as the cause of canine abortions in the Midwest United States. J Vet Diagn Invest, 26:699-704. PMID: 25085872.

• Ma L, Wang Y, Shen J, Zhang Q, Wu C. 2014.Tracking Campylobacter contamination along a broiler chicken production chain from the farm level to retail in China. Int J Food Microbiol. 181:77-84. PMID: 24831929.

• Wang Y, M. Zhang, F. Deng, Z. Shen, C. Wu, J. Zhang, Zhang Q, and J. Shen. 2014. Emergence of multidrug-resistant Campylobacter with a horizontally acquired ribosomal RNA methylase. Antimicrob. Agents Chemother. 58(9):5405-5412.

• Ma, L., Z. Shen, G.W. Naren, H. Li, X. Xia, C. Wu, J. Shen, Q. Zhang, and Y. Wang. Identification of a novel G2073A mutation in 23S rRNA in amphenicol-selected Campylobacter jejuni. PLoS One. 9(4):e94503. doi: 10.1371/journal.pone.0094503

• Su, C.C., A. Radhakrishnan, N. Kumar, F. Long, J. R. Bolla, H.T. Lei, J. A. Delmar, S. V. Do, T.H. Chou, K. R. Rajashankar, Q. Zhang and E. W. Yu. 2014. Crystal structure of the Campylobacter jejuni CmeC outer membrane channel. Protein Sci. 23:954-961.

• Shen, Z., T. Luangtongkum, Z. Qiang, B. Jeon, L. Wang, and Q. Zhang. 2014. Identification of a novel membrane transporter mediating resistance to organic arsenic in Campylobacter jejuni. Antimicrob Agents Chemother. 58(4):2021-2029.

• Oh, E., Q. Zhang, and B. Jeon. 2014. Target optimization for peptide nucleic acid (PNA)-mediated antisense inhibition of the CmeABC multidrug efflux pump in Campylobacter jejuni. J. Antimicrob. Chemother. 69(2):375-380.

• Qin, S.S., Y. Wang, Q. Zhang, M. Zhang, F. Deng, Z. Shen, C. Wu, S. Wang, J. Zhang, and J. Shen, 2014. Report of ribosomal RNA methylase gene erm(B) in multidrug resistant Campylobacter coli. J. Antimicrob. Chemother. 69 (4): 964-968.

• Lin, J., K. Nishino, M.C. Roberts, M. Tolmasky, R.I. Aminov, and L. Zhang. 2014. Mechanisms of antibiotic resistance. Frontiers in Microbiology (section Antimicrobials, Resistance and Chemotherapy) Accepted

• Nosanchuk, J.D., J. Lin, R. P. Hunter, R. I. Aminov. 2014. Low dose antibiotics: current status and outlook for the future. Frontiers in Microbiology (section Antimicrobials, Resistance and Chemotherapy). 5:478. doi; 10.3389/fmicb.2014.00478

• Lin, J. 2014. Antibiotic growth promoters enhance animal production by targeting bile salt hydrolase and its producers. Frontiers in Microbiology (section Antimicrobials, Resistance and Chemotherapy). 5:33. doi: 10.3389/fmicb.2014.00033

• Wu, J.E, J. Lin, and Q. Zhong. 2014. Physical and antimicrobial characteristics of thyme oil emulsified with soluble soybean polysaccharide. Food Hydrocolloids. 39:144-150.

• Smith, K., X. Zeng, J. Lin. 2014. Discovery of bile salt hydrolase inhibitors using an efficient high-throughput screening system. PLOS One 9(1):e85344. DOI: 10.1371/journal.pone.0085344

• Zhang, H.W., X. Zeng, Q.Qi, K.L. Sun, C.J.Ma, X.J. Hu, J. Lin. 2014. The interaction of CmeA and CmeC is independent of substrate and CmeB in Campylobacter jejuni CmeABC system. Journal of Chinese Science Bulletin (In Press)

• Zeng, X., S. Brown, B. Gillespie, J. Lin. 2014. A single nucleotide in promoter modulates the expression of the ?-lactamase OXA-61 in Campylobacter jejuni. Journal of Antimicrobial and Chemotherapy. 69:1215-1223. DOI:10.1093/jac/dkt515

• Andino, A., S. Pendleton, N. Zhang, W. Chen, F. Critzer, and I. Hanning. 2014. Survival and virulence of Salmonella spp. in poultry feed in strain and serovar dependent. Poult Sci. 93: 441-447

• Gonzalez-Gil, F., S. Diaz-Sanchez, S. Pendleton, A. Andino, N. Zhang, C. Yard, N. Crilly, F. Harte, and I. Hanning. 2014. Yerba Mate Enhances Probiotic Bacteria Growth In Vitro but as a Feed Additive does not Reduce Salmonella Enteritidis Colonization In Vivo. 93: 434-440. 47.

• Diaz-Sanchez, S., D. D’Souza, D. Biswas, and I. Hanning. Botanical Alternatives to Antibiotics for use in Organic Poultry Production. Poultry Science. In Press

• Salaheen, S., N. Chowdhury, I. Hanning, and D. Biswas. 2014. Zoonotic Bacterial Pathogens and Mixed Crop-Livestock Farming. Poultry Science. In Press

• Kandasamy, S., K.S. Chattha, A.N. Vlasova, and L.J. Saif. 2014. Prenatal vitamin A deficiency impairs adaptive immune responses to pentavalent rotavirus vaccine (RotaTeq®) in gnotobiotic pig model. Vaccine 32:816-24.

• Lee,C.S., C. Lee, J. Marion, Q. Wang, L.J. Saif and J. Lee. 2014. Occurrence of human enteric viruses at freshwater beaches during swimming season and its link to water inflow. Science of the Total Environment 472:757-766.

• Jung, K, K. Scheuer, Z. Zhang, Q. Wang, L. J. Saif. 2014. Pathogenesis of GIII.2 bovine norovirus, CV186-OH/00/US strain in gnotobiotic calves. Vet Microbiol. 168:202-207.

• Takanashi, S., L.J. Saif, J. H. Hughes, T. Meulia, K. Jung, K. A. Scheuer, and Q. Wang. 2014. Failure of propagation of human norovirus in intestinal epithelial cells with microvilli grown in three-dimensional cultures. Arch. Virol. 159:257-266.

• Amimo, J.O, Okoth, E, Junga, J O, Ogara, W.O, Njahira, M.N, Wang, Q ,Vlasova, A.N, Saif, L.J, and Djikeng, A. 2014. Molecular detection and genetic characterization of Kobuviruses and Astroviruses in asymptomatic local pigs in East Africa. Arch Virol .

• Gebreyes, W.A., J. Dupouy-Camet, M.J. Newport, C.J.B. Oliveira, L.S. Schlesinger, Y.M. Saif, S. Kariuki, L.J. Saif, W. Saville, T. Wittum, A. Hoet, L.J. King, S. Quessy, R. Kazwala, B. Tekla, T. Shryock, M. Bisesi, P. Pacthanee and S. Bonnmar. 2014. The global one health paradigm: Challenges and opportunities for tackling infectious diseases at the human, animal and environment interface in low-resource settings. PLOS Neglected Tropical Diseases (accepted).

• Kandasamy, S., K.S. Chattha, A.N. Vlasova, G. Rajashekara, and L.J. Saif. 2014. Dual-colonization of Lactobacillus rhamnosus strain GG and Bifidobacterium animalis subsp. lactis Bb12 probiotics enhances mucosal B cell responses to an oral human rotavirus vaccine in a neonatal gnotobiotic pig model. Gut Microbes (in press).

• Kumar, A., A N. Vlasova, Z Liu, K S. Chattha, S Kandasamy, M Esseili, X Zhang, G Rajashekara, and L.J. Saif. 2014. In vivo gut Transcriptome Responses to Lactobacillus rhamnosus GG and Lactobacillus acidophilus in Neonatal Gnotobiotic Piglets. Gut Microbes (submitted).

• Hemida, M.G., R.A. Perera, P. Wang, M.A. Alhammadi, L.Y. Siu, M. Li, L.L. Poon,L.J. Saif, A. Alnaeem and M. Peiris. 2013. Middle East respiratory syndrome (MERS) coronavirus seroprevalence in domestic livestock in Saudi Arabia, 2010 to 2013. www.eurosurveillance.org.

• Jung, K., Q. Wang, K.A. Scheuer, Z. Lu, Y. Zhang, and L.J. Saif. 2014. Pathology of US porcine epidemic diarrhea virus strain PC21A in gnotobiotic pigs. Emerg Infect Dis. http://dx.doi.org/10.3201/eid2004.131685.

• Oka, T., L. J. Saif, D. Marthaler, M. A. Esseili, Meuli, T., C. M. Lin, A. N. Vlasova, K. Jung, Y. Zhang, and Q. Wang. 2014. Cell culture isolation and sequence analysis of genetically diverse US porcine epidemic diarrhea virus strains including a novel strain with a large deletion in the spike gene. Veterinary microbiology. DOI: 10.1016/j.vetmic.2014.08.012. (online at http://authors.elsevier.com/sd/article/S0378113514003885).

• Martella, V., P. Pinto, E. Lorusso, B. Di Martino, Q. Wang, V. Larocca, A. Cavalli, M. Camero, N. Decaro, K. Banyai, L.J. Saif, and C. Buonavoglia. 2014. Detection and full-length genome characterization of novel canine vesiviruses. Emerging Infectious Diseases (submitted).

• Kassem II, Rajashekara G. Formate Dehydrogenase Localization and Activity Are Dependent on an Intact Twin Arginine Translocation System (Tat) in Campylobacter jejuni 81-176. Foodborne Pathog Dis. 2014 Sep 30. [Epub ahead of print] PubMed PMID: 25268895.

• Kashoma IP, Kumar A, Sanad YM, Gebreyes W, Kazwala RR, Garabed R, Rajashekara G. Phenotypic and Genotypic Diversity of Thermophilic Campylobacter spp. in Commercial Turkey Flocks: A Longitudinal Study. Foodborne Pathog Dis. 2014 Sep 3.[Epub ahead of print] PubMed PMID: 25184688.

• Drozd M, Chandrashekhar K, Rajashekara G. Polyphosphate-mediated modulation of Campylobacter jejuni biofilm growth and stability. Virulence. 2014 Aug 15;5(6):680-90. doi: 10.4161/viru.34348. PubMed PMID: 25127528; PubMed Central PMCID: PMC4139409.

• Malde A, Gangaiah D, Chandrashekhar K, Pina-Mimbela R, Torrelles JB, Rajashekara G. Functional characterization of exopolyphosphatase/guanosine pentaphosphate phosphohydrolase (PPX/GPPA) of Campylobacter jejuni. Virulence. 2014 May 15;5(4):521-33. doi: 10.4161/viru.28311. Epub 2014 Feb 25. PubMed PMID: 24569519; PubMed Central PMCID: PMC4063813.

• Kassem II, Khatri M, Sanad YM, Wolboldt M, Saif YM, Olson JW, Rajashekara G. The impairment of methylmenaquinol:fumarate reductase affects hydrogen peroxidesusceptibility and accumulation in Campylobacter jejuni. Microbiologyopen. 2014 Apr;3(2):168-81. doi: 10.1002/mbo3.158. Epub 2014 Feb 7. PubMed PMID: 24515965; PubMed Central PMCID: PMC3996566.

• Sanad YM, Jung K, Kashoma I, Zhang X, Kassem II, Saif YM, Rajashekara G. Insights into potential pathogenesis mechanisms associated with Campylobacter jejuni -induced abortion in ewes. BMC Vet Res. 2014 Nov 25;10(1):274.

• Vogstad, A. R., R. A. Moxley, G. E. Erickson, T. J. Klopfenstein, and D. R. Smith. 2014. Stochastic simulation model comparing distributions of STEC O157 fecal shedding prevalence between cattle vaccinated with type III secreted vaccines and non-vaccinated cattle. Zoonoses Public Health 61:283-289.

• Moxley, R. A., and G. R. Acuff. 2014. Peri- and post-harvest factors in the control of Shiga toxin-producing Escherichia coli in beef. Microbiol. Spectrum 2(6):EHEC-0017-2013. doi:10.1128/microbiolspec. EHEC-0017-2013.

• Wijemanne, P., and R. A. Moxley. 2014. Glucose significantly enhances enterotoxigenic Escherichia coli adherence to intestinal epithelial cells through its effects on heat-labile enterotoxin production. PLoS One 9:e113230.

• Wijemanne, P., J. Xing, E. M. Berberov, D. B. Marx, D. H. Francis, and R. A. Moxley. Relationship between heat-labile enterotoxin secretion capacity and virulence in wild type porcine-origin enterotoxigenic Escherichia coli strains. PLoS One (submitted)

• Bisha B, Adkins JA, Jokerst JC, Chandler JC, Pérez-Méndez A, Coleman SM, Sbodio AO, Suslow TV, Danyluk MD, Henry CS, Goodridge LD. 2014. Colorimetric paper-based detection of Escherichia coli, Salmonella spp., and Listeria monocytogenes from large volumes of agricultural water. J Vis Exp. 9;(88). doi: 10.3791/51414.

• Pérez-Méndez A, Chandler JC, Bisha B, Goodridge LD. 2014. Concentration of enteric viruses from tap water using an anion exchange resin-based method. J Virol Methods. 206:95-8. doi: 10.1016/j.jviromet.2014.05.025.

• Pérez-Méndez A, Chandler JC, Bisha B, Goodridge LD. 2014. Evaluation of an anion exchange resin-based method for concentration of F-RNA coliphages (enteric virus indicators) from water samples. J Virol Methods. 204:109-15. doi: 10.1016/j.jviromet.2014.03.024.

• Pérez-Méndez A, Chandler JC, Bisha B, Coleman SM, Zhanqiang S, Gang Y, Goodridge LD. 2013. Evaluation of a simple and cost effective filter paper-based shipping and storage medium for environmental sampling of F-RNA coliphages. J Virol Methods. 2013 Dec;194(1-2):60-6. doi: 10.1016/j.jviromet.2013.07.047.

• Mirajkar N.S. and Gebhart C.J. Understanding the molecular epidemiology and global relationships of Brachyspira hyodysenteriae from swine herds in the United States: a multi-locus sequence typing approach. PLoS One. Sept 2014. 9(9):e107176. doi: 10.1371/journal.pone.0107176.

• Vannucci FA, Gebhart CJ. Recent advances in understanding the pathogenesis of Lawsonia intracellularis infections. Vet Pathol. 2014 Mar;51(2):465-77. doi: 10.1177/0300985813520249. Epub 2014 Jan 29. PubMed PMID: 24476941.

• Sampieri F, Allen AL, Alcorn J, Clark CR, Vannucci FA, Pusterla N, Mapes SM, Ball KR, Dowling PM, Thompson J, Bernstein LR, Gebhart CJ, Hamilton DL. Efficacy of gallium maltolate against Lawsonia intracellularis infection in a rabbit model. J Vet Pharmacol Ther. 2014 Dec;37(6):571-8. doi: 10.1111/jvp.12132. Epub 2014 Apr 15. PubMed PMID: 24730377.

• Sampieri F, Alcorn J, Allen AL, Clark CR, Vannucci FA, Pusterla N, Mapes S, Ball KR, Dowling PM, Thompson J, Bernstein LR, Gebhart CJ, Hamilton DL. Pharmacokinetics of gallium maltolate in Lawsonia intracellularis-infected and uninfected rabbits. J Vet Pharmacol Ther. 2014 Oct;37(5):486-99. doi: 10.1111/jvp.12114. Epub 2014 Mar 15. PubMed PMID: 24628462.

• Sampieri F, Vannucci FA, Allen AL, Pusterla N, Antonopoulos AJ, Ball KR, Thompson J, Dowling PM, Hamilton DL, Gebhart CJ. Species-specificity of equine and porcine Lawsonia intracellularis isolates in laboratory animals. Can J Vet Res. 2013 Oct;77(4):261-72. PubMed PMID: 24124268; PubMed Central PMCID: PMC3788657.

• Sampieri F, Allen AL, Pusterla N, Vannucci FA, Antonopoulos AJ, Ball KR, Thompson J, Dowling PM, Hamilton DL, Gebhart CJ. The rabbit as an infection model for equine proliferative enteropathy. Can J Vet Res. 2013 Apr;77(2):110-9. PubMed PMID: 24082402; PubMed Central PMCID: PMC3605926.

• Marthaler D, Jiang Y, Collins J, and Rossow K. Complete Genome Sequence of Strain SDCV/USA/Illinois121/2014, a Porcine Deltacoronavirus from the United States Genome Announc. March/April 2014 2:e00218-14; doi:10.1128/genomeA.00218-14

• Jindal N, Mor SK, Patnayak DP, Ziegler AF, Marthaler D, Goyal SM. Molecular characterization of turkey enteric reovirus S3 gene. Avian Pathol. 2014 Mar 25. PMID: 24666328

• Marthaler D, Rossow K, Culhane M, Goyal S, Collins J, Matthijnssens J, Nelson M, and Ciarlet M. Widespread Rotavirus H in Commercially Raised Pigs, United States. Emerg Infect Dis. 2014 Jul;20(7):1203-1206. doi: 10.3201/eid2007.140034. PubMed PMID: 24960190.

• Marthaler D, Raymond L, Jiang Y, Collins J, Rossow K, and Rovira A. Rapid Detection, Complete Genome Sequencing, and Phylogenetic Analysis of Porcine Deltacoronavirus, United States. Emerg Infect Dis. 2014 Aug. http://dx.doi.org/10.3201/eid2008.14-0526.

• Marthaler D, Suzuki T, Rossow K, Culhane M, Collins J, Goyal S, Tsunemitsu H, Kuga K, Ciarlet M, and Matthijnssens J. VP6 Genetic Diversity, Reassortment, Intragenic Recombination and Classification of Rotavirus B in Japanese and American Pigs. Vet Microbiol. 2014 Aug 27;172(3-4):359-66. doi: 10.1016/j.vetmic.2014.05.015. Epub 2014 Jun 2

• Alonso C, Goede DP, Morrison RB, Davies PR, Rovira A, Marthaler DG, Torremorell M. Evidence of infectivity of airborne porcine epidemic diarrhea virus and detection of airborne viral RNA at long distances from infected herds. Vet Res. 2014 Jul 14;45(1):73.

• Vlasova A*, Marthaler D*, Wang Q, Culhane M, Rossow K, Rovira A, Collins J, and Saif L. Distinct Characteristics and Complex Evolution of PEDV Strains, North America, May 2013–February 2014. Emerg Infect Dis. 2014 Oct. http://dx.doi.org/10.3201/eid2010.140491 (*corresponding authors)

• Marthaler D, Bruner L, Collins J, and Rossow K. Third Strain of Porcine Epidemic Diarrhea Virus, United States. Emerg Infect Dis. Emerg Infect Dis. 2014 Dec. http://dx.doi.org/10.3201/eid2012.140908

• Oka T, Saif L, Marthaler D, Esseili M, Meulia T, Lin C, Vlasova A, Jung K, Zhang Y, and Wang Q. Cell culture isolation and sequence analysis of genetically diverse US porcine epidemic diarrhea virus strains including a novel strain with a large deletion in the spike gene. Vet Microbiol. 2014 Aug 27. pii:S0378-1135(14)00388-5. doi: 10.1016/j.vetmic.2014.08.012. PubMed PMID: 25217400.

• Marthaler D, Homwong N, Rossow K, Culhane M, Goyal S, Collins J, Matthijnssens J, and Ciarlet M. Rapid detection and high occurrence of porcine rotavirus A, B, and C by RT-qPCR in diagnostic samples. J Virol Methods. 2014 Sep 4;209C:30-34. doi: 10.1016/j.jviromet.2014.08.018. PubMed PMID: 25194889.

• Li M, Monaco MH, Wang M, Comstock SS, Kuhlenschmidt TB, Fahey GC, Jr., et al. Human milk oligosaccharides shorten rotavirus-induced diarrhea and modulate piglet mucosal immunity and colonic microbiota. ISME J. 2014;8(8):1609-20. doi: 10.1038/ismej.2014.10. PubMed PMID: 24522264.

• Tang X, Kuhlenschmidt TB, Li Q, Ali S, Lezmi S, Chen H, et al. A mechanically-induced colon cancer cell population shows increased metastatic potential. Molecular cancer. 2014;13:131. doi: 10.1186/1476-4598-13-131. PubMed PMID: 24884630; PubMed Central PMCID: PMC4072622

• Zhou M, Guo Z, Yang Y, Duan Q, Zhang Q, Yao F, Zhang X, Hardwidge PR, Zhu G, Flagellin and F4 fimbriae have Opposite Effects on Biofilm Formation and Quorum Sensing in F4ac+ Enterotoxigenic Escherichia coli, Veterinary Microbiology, 2014, Jan 10;168(1):148-53. PMID: 2423866

• Rüter C, Hardwidge PR. “Drugs from Bugs”: Bacterial effector proteins as promising biological (immune-) therapeutics, FEMS Microbiology Letters, 2014, 351:126-132. PMID: 24261744

• Feuerbacher LA, Hardwidge PR. Influence of NleH effector expression, host genetics, and inflammation on Citrobacter rodentium colonization in mice, Microbes and Infection, 2014, May;16(5):429-33. PMID: 2461320

• Zhou M, Guo Z, Duan Q, Hardwidge PR, Zhu G. Escherichia coli type three secretion system 2: a new kind of T3SS?, Veterinary Research, 2014, Mar 19;45(1):32. PMID: 24641581

• Tang Y, Zhang X, Yin Y, Hardwidge PR, Fang W. Streptococcus suis Type 2 SSU0587 protein is a beta-galactosidase that contributes to bacterial adhesion but not to virulence in mice, Journal of Veterinary Medical Science, 2014, 76(7): 1055–1059, 2014. PMID: 24670993

• Tang Y, Li F, Tan B, Liu G, Kong X, Hardwidge PR, Yin Y. Enterotoxigenic Escherichia coli infection induces intestinal epithelial cell autophagy, Veterinary Microbiology, 2014, Jun 25;171(1-2):160-4. PMID: 24742948

• Yang Y, Zhou M, Hou H, Zhu J, Yao F, Zhang X, Zhu X, Hardwidge PR, Zhu, G. Quorum sensing gene luxS regulates flagella expression and Shiga-like toxin production in F18 Escherichia coli, Canadian Journal of Microbiology, 2014, Jun;60(6):355-61. PMID: 24848979

• Tang Y, Tan B, Xiong X, Li F, Ren W, Kong X, Qui W, Hardwidge, PR, Yin Y. Methionine deficiency reduces autophagy and accelerates death in intestinal epithelial cells infected with enterotoxigenic Escherichia coli, Amino Acids, 2014, Epub ahead of print. PMID: 24965529

• Ren W, Liu G, Yin J, Chen S, Li T, Kong X, Peng Y, Yin Y, Hardwidge PR. Draft genome sequence of enterotoxigenic Escherichia coli strain W25K, Genome Announcements, 2014, Jun 26;2(3). PMID: 24970825

• Ren W, Yin J, Duan J, Liu G, Zhu X, Chen S, Li T, Wang S, Tang Y, Hardwidge PR. Mouse jejunum innate immune responses altered by enterotoxigenic Escherichia coli (ETEC) infection, Microbes and Infection, 2014, Epub ahead of print

• Martinez-Quiles N, Feuerbacher LA, Benito-Leon M, Hardwidge PR. Contribution of Crk adaptor proteins to host cell and bacteria interactions, BioMed Research International, Advances on Host Cells-Bacteria Interaction by Enterobacteriaceae Pathogens, 2014, in press

• Agga G, Scott HM, Amachawadi R, Nagaraja TG, Vinasco J, Bai J, Norby B, Renter DG, Dritz S, Nelssen J, Tokach M. Effects of chlortetracycline and copper supplementation on antimicrobial resistance of fecal Escherichia coli from weaned pigs. Prev Vet Med. 2014; 114(3–4): 231–246.

• Cernicchiaro N, Renter DG, Cull CA, Paddock ZD, Shi X, Nagaraja TG. Fecal shedding of non-O157 serogroups of Shiga toxin-producing Escherichia coli in feedlot cattle vaccinated with an E. coli O157:H7 SRP® vaccine and fed a Lactobacillus-based direct-fed microbial J Food Prot. 2014; 5: 732-737.

• Paddock ZD, Renter DG, Cull CA, Paddock ZD, Bai J, Nagaraja TG. Escherichia coli O26 in feedlot cattle: fecal prevalence, isolation, characterization and effects of an E. coli O157 vaccine and a direct-fed microbial. Foodborne Pathog Dis. 2014; 11(3): 186-193.

• Smith R, Sanderson MW, Jones R, Renter D, Larson RL. Economic risk analysis model for Bovine Viral Diarrhea Virus biosecurity in cow-calf herds. Prev Vet Med. 2014; 113(4): 492-503.

• Jacob M, Bai J, Renter DG, Rogers A, Shi X, Nagaraja TG. Comparing real-time and conventional PCR to culture-based methods for detecting and quantifying Escherichia coli O157 in cattle feces. J Food Prot. 2014; 77(2): 314-319.

• Shivanna V, Kim Y, Chang KO. 2014. The crucial role of bile acids in the entry of porcine enteric calicivirus. Virology 456-457:268-278.

• Shivanna V, Kim Y, Chang KO. 2014. Endosomal acidification and cathepsin L activity is required for calicivirus replication. Virology 464-465C:287-295.

• Prior AM, Kim Y, Weerasekara S, Moroze M, Alliston KR, Uy RA, Groutas WC, Chang KO, Hua DH. 2013. Design, synthesis, and bioevaluation of viral 3C and 3C-like protease inhibitors. Bioorganic & Medicinal Chemistry Letters 23:6317-6320.

• Samuelson DR, Eucker TP, Bell JA, Dybas LA, Mansfield LS, Konkel ME. 2013. The Campylobacter jejuni CiaD effector protein activates MAP 1 kinase signaling pathways and is required for the development of acute disease. Cell Communication and Signaling 2013, 11:79, doi:10.1186/1478-811X-11-79.

• Malik A., Sharma D., St. Charles J.L., Dybas L.A., Mansfield L.S. 2013. Contrasting immune responses mediate Campylobacter jejuni induced colitis and autoimmunity, Nature Mucosal immunology, 13 November 2013; doi: 10.1038/mi.2013.97.

• Jerome, JP and Mansfield LS. 2013 Within-host evolution of Campylobacter jejuni, In "Campylobacter Ecology and Evolution", Samuel K. Sheppard; Associate editor: Guillaume Méric, Caister Academic Press, UK, pp. 1-25, Publication date: April 2014, ISBN: 978-1-908230-36-2.

• Flies AS, Maksimoski MT, Mansfield LS, Weldele ML and Holekamp KE. 2014. Characterization of toll-like receptors 1-10 in spotted hyenas. Veterinary Research Communications, Veterinary Research Communications Jun;38(2):165-70. doi: 10.1007/s11259-014-9592-3. Epub 2014 Feb 2.

• Flies AS, Mansfield LS, Grant CK, Weldele ML, Holekamp KE. 2014. Markedly elevated antibody responses in wild versus captive spotted hyenas show that environmental and ecological factors are important modulators of immunity, Developmental and Comparative Immunology, in review.

• Afema JA, Mather AE, Sischo WM. Antimicrobial Resistance Profiles and Diversity in Salmonella from Humans and Cattle, 2004-2011. Zoonoses Public Health. Nov 21. doi: 10.1111/zph.12172. [Epub ahead of print], 2014.

• Miller CB, Pierle SA, Brayton KA, Ochoa JN, Shah DH, Lahmers KK. Transcriptional profiling of cross-protective Salmonella enterica serovar Typhimurium UK-1 dam mutant identifies a set of genes more transcriptionally active compared to wild-type, and stably transcribed across biologically relevant microenvironments. Pathogens. 3:417-436, 2014.

• Addwebi TA, Call DR, Shah DH. Contribution of Salmonella Enteritidis virulence factors to intestinal colonization and systemic dissemination in day-old chickens. Poultry Science. 93:871-881, 2014.

• Shah DH. RNA-seq reveals transcriptional differences between high- and low-pathogenic Salmonella Enteritidis strains. Applied and Environmental Microbiology. 80:896-906, 2014.

• Paul NC, Al-Adwani S, Crespo R, Shah DH. Evaluation of passive immunotherapeutic efficacy of hyperimmunized egg yolk powder against intestinal colonization of Campylobacter jejuni in chickens. Poultry Science. 93:2779-87, 2014.

• Eberhart LJ, Ochoa J, Besser TE, & Call DR. 2014. Microcin MccPDI reduces the prevalence of susceptible Escherichia coli in neonatal calves. Journal of Applied Microbiology 117:340-6.

• Volkova VV, Lu Z, Besser TE, & Grohn Y. 2014. Modeling Infection Dynamics of Bacteriophages in Enteric Escherichia coli: Estimating the Contribution of Transduction to Antimicrobial Gene Spread. Applied and Environmental Microbiology 80:4350-62.

• Suthar N, Roy S, Call DR, Besser TE, & Davis MA. 2014. An individual-based model of transmission of resistant bacteria in a veterinary teaching hospital. PLoS One 9(6)e98589.

• Jaros P, Cookson AL, Campbell DM, Duncan GE, Prattley D, Carter P, Besser TE, Shringi S, Hathaway S, Marshall JC, French NP. (Accepted 2014). Geographic divergence of bovine and human Shiga toxin-producing Escherichia coli O157:H7 genotypes in New Zealand. Emerging Infectious Diseases.

• Besser TE, Schmidt C, Shah DH, & Shringi S. (accepted 2014). Pre-harvest' Food Safety for E. coli O157 and other pathogenic STECs. Microbiology Spectrum.

• Suthar N, Roy S, Call DR, Besser TE, Davis MA. An individual-based model of transmission of resistant bacteria in a veterinary teaching hospital. PLoS One. 2014 Jun 3;9(6):e98589. doi: 0.1371/journal.pone.0098589. eCollection 2014. PMID: 24893006




Book Chapters

• Zeng, X., and J. Lin. 2014. Siderophore-mediated iron acquisition for Campylobacter infection. Chapter 10. Pp111- 124 In S. Sheppard and G. Meric (eds), Campylobacter Ecology and Evolution. Caister Academic Press, Norfolk, U.K.

• Moxley, R. A., and G. R. Acuff. Peri- and post-harvest factors in the control of Shiga toxin-producing Escherichia coli in beef. Enterohemorrhagic Escherichia coli, 2nd Ed., American Society for Microbiology Press, Washington, D.C. (in press)

02/03/2016

Peer-reviewed journal articles

 

Wang, Yang; Dong, Yanni; Deng, Fengru; Liu, Dejun; Yao, Hong; Zhang, Qijing; Shen, Jianzhong; Liu, Zhihai; Gao, Yanan; Wu, Congming; Shen, Zhangqi. 2015. Species shift and multidrug resistance of Campylobacter from chicken and swine, China, 2008-2014. Journal of Antimicrobial Chemotherapy. In press.

 

Deng, Fengru, Jianzhong Shen, Maojun Zhang, Congming Wu, Qijing Zhang, and Yang Wang. 2015. Constitutive and inducible expression of the ribosomal RNA methylase gene erm(B) in Campylobacter. Antimicrob. Agents Chemother. 59(10):6661-4.

 

Qin, Shangshang, Hui Qi, Qijing Zhang, Di Zhao, Zhen-Zhen Liu, Hao Tian, Lijuan Xu, Hui Xu, Mengmeng Zhou, Xianju Feng, Hong-Min Liu. 2015. Emergence of extensively drug-resistant Proteus mirabilis harboring a conjugative NDM-1 plasmid and a novel Salmonella genomic island 1 variant (SGI1-Z). Antimicrob. Agents Chemother. 59(10): 6601–6604.

 

Dai, Lei, Wayne T Muraoka, Zuowei Wu, Orhan Sahin, and Qijing Zhang. 2015. A single nucleotide change in mutY increases the emergence of antibiotic-resistant Campylobacter jejuni mutants. Journal of Antimicrobial Chemotherapy 07/2015; DOI:10.1093/jac/dkv190

Grinnage-Pulley, Tara and Qijing Zhang. 2015. Genetic Basis and Functional Consequences of Differential Expression of the CmeABC Efflux Pump in Campylobacter jejuni Isolates. PLoS ONE 10(7):e0131534.

 

Sahin, Orhan, Issmat I. Kassem, Zhangqi Shen, Jun Lin, Gireesh Rajashekara, and Qijing Zhang. 2015. Campylobacter in Poultry: Ecology and Potential Interventions. Avian Diseases 59(2):185-200.

 

Kovač, Jasna, Katarina Šimunović, Wu Zuowei, Anja Klančnik, Franz Bucar, Qijing Zhang, Sonja Smole Možina. 2015. Antibiotic resistance modulation and modes of action of (-)-[alpha]-pinene in Campylobacter jejuni. PLoS ONE 10(4): e0122871.

 

Kandasamy, S., Vlasova, A.N., Chattha, K.S., Fisher, D., Shao, L., Rajashekara, G., Saif, L.J. 2015. Escherichia coli Nissle colonization ameliorates human rotavirus diarrhea and modulates B cell responses in a neonatal gnotobiotic pig disease model. JVI (Accepted).

 

Shao, L., Fischer, D.D., Kandasamy, S., Rauf, A., Langel, S.N., Wentworth, D.E., Stucker, K.M., Halpin, R.A., Lam, H.C., Marthaler, D., Saif, L.J., Vlasova, A.N. 2015. Comparative in vitro and in vivo studies of porcine rotavirus G9P[13] and human rotavirus Wa G1P[8]. J Virol. 2015 Oct 14. pii: JVI.02401-15. [Epub ahead of print].

 

Vlasova, A.N., Kandasamy, S., Chattha, K.S., Rajashekara, G., Saif, L.J. 2015. Comparison of probiotic lactobacilli and bifidobacteria effects, immune responses and rotavirus vaccines and infection in different host species. Veterinary Immunology and Immunopathology. (In press).

 

Jung, K., Annamalai. T., Lu, Z., Saif, L.J. Comparative pathogenesis of US porcine epidemic diarrhea virus (PEDV) strain PC21A in conventional 9-day-old nursing versus 26-day-old weaned pigs. Veterinary Microbiology. July 9;178(1-2): 31-40. 2015.

 

Jung, K. B. Eyerly, T. Annamalai, Z. Lu and L.J. Saif. 2015. Structural alteration of tight and adherens junctions in villous and crypt epithelium of the small and large intestine of conventional nursing piglets infected with porcine epidemic diarrhea virus. Vet. Microbiol.177(3-4):373-378.

 

Annamalai, T., L.J. Saif Z. Lu, and K. Jung. 2015. Age-dependent variation in innate immune responses to porcine epidemic diarrhea virus infection in suckling versus weaned pigs. Vet Immunol and Immunopath doi:10.1016/j.vetimm.2015.09.006.

 

Hu, H., Jung, K., Vlasova, A.N., Chepngeno, J., Lu, Z., Wang, Q., Saif, L.J. Isolation and characterization of porcine deltacoronavirus from pigs with diarrhea in the United States. Journal of Clinical Microbiology 53, 1537-1548. 2015.

 

 

Esseili MA, Chin A, Saif L, Miller SA, Qu F, Lewis Ivey ML, Wang Q. 2015. Postharvest Survival of Porcine Sapovirus, a Human Norovirus Surrogate, on Phytopathogen-Infected Leafy Greens. J Food Prot 78:1472-1480.

 

Esseili MA, Saif LJ, Farkas T, Wang Q. 2015. Feline Calicivirus, Murine Norovirus, Porcine Sapovirus, and Tulane Virus Survival on Postharvest Lettuce. Appl Environ Microbiol 81:5085-5092.

 

Esseili MA, Gao X, Tegtmeier S, Saif LJ, Wang Q. 2015. Abiotic stress and Phyllosphere Bacteria Influence the Survival of Human Norovirus and its surrogates on Preharvest Leafy Greens. Appl Environ Microbiol doi:10.1128/AEM.02763-15.

 

Zhongyan Lu, Masaru Yokoyama, Ning Chen, Oka Tomoichiro, Kwonil Jung, Kyeong-Ok Chang, Thavamathi Annamalai, Qiuhong Wang*, and Linda J. Saif*. Molecular mechanism of cell culture adaptation of porcine sapovirus. (J. Virol, Accepted).

 

Kashoma IP, Kassem II, Kumar A, Kessy BM, Gebreyes W, Kazwala RR and Rajashekara G (2015) Antimicrobial Resistance and Genotypic Diversity ofCampylobacter Isolated from Pigs, Dairy, and Beef Cattle in Tanzania. Front. Microbiol. 6:1240. doi: 10.3389/fmicb.2015.01240

 

Chandrashekhar K, Kassem II, Nislow C, Gangaiah D, Candelero-Rueda RA, Rajashekara G. Transcriptome analysis of Campylobacter jejuni polyphosphate kinase (ppk1 and ppk2) mutants. Virulence. 2015 Nov 5:1-5. [Epub ahead of print] PubMed PMID: 26537695.

 

Kashoma IP, Kassem II, John J, Kessy BM, Gebreyes W, Kazwala RR, Rajashekara G. Prevalence and Antimicrobial Resistance of Campylobacter Isolated from Dressed Beef Carcasses and Raw Milk in Tanzania. Microb Drug Resist. 2015 Jul 8. [Epub ahead of print] PubMed PMID: 26153978.

 

Chandrashekhar K, Gangaiah D, Pina-Mimbela R, Kassem II, Jeon BH, Rajashekara G. Transducer like proteins of Campylobacter jejuni 81-176: role in chemotaxis and colonization of the chicken gastrointestinal tract. Front Cell Infect Microbiol. 2015 May 27;5:46. doi: 10.3389/fcimb.2015.00046. eCollection 2015. PubMed PMID: 26075188; PubMed Central PMCID: PMC4444964.

 

Zeng, X., B. Gillespie, and J. Lin. 2015. Important role of a putative lytic transglycosylase Cj0843 in β-lactam resistance in Campylobacter jejuni. Frontiers in Microbiology (section Antimicrobials, Resistance and Chemotherapy) 6:1292. DOI:10.3389/fmicb.2015.01292

 

Zhang, Y., J. Lin, Q. Zhong. 2015. S/O/W emulsions prepared with sugar beet pectin to enhance the viability of probiotic Lactobacillus salivarius NRRL B-30514. Food Hydrocolloids (In Press).

Xu, F., F. Guo, C. Wu, G. Cui, X. Zeng, B.Yang, H. Zhou, J. Lin. 2015. Transcriptomic analysis of Campylobacter jejuni NCTC 11168 in response to epinephrine and norepinephrine. Frontiers in Antimicrobials, Resistance and Chemotherapy. 6:452. doi: 10.3389/fmicb.2015.00452.

 

Zeng, X., D. Ardeshna, and J. Lin. 2015. Heat shock enhanced conjugation efficiency in standard Campylobacter jejuni strains. Applied and Environmental Microbiology. 81:4546-4552.

 

Zhang, Y., J. Lin, Q. Zhong. 2015. The increased viability of probiotic Lactobacillus salivarius NRRL B-30514 encapsulated in emulsions with multiple lipid-protein-pectin layers. Food Research International. 71:9-15.

 

Lin, J., K. Nishino, M.C. Roberts, M. Tolmasky, R.I. Aminov, and L. Zhang. 2015. Mechanisms of antibiotic resistance. Frontiers in Microbiology (section Antimicrobials, Resistance and Chemotherapy). 6:34. Doi:10.3389/fmicb.2015.00034

 

Mirajkar NS and Gebhart CG. Comparison of agar dilution and Etest with broth microdilution for susceptibility testing of swine Brachyspira species. J. Vet. Diagn. Invest. 2015 (In press).

 

Mirajkar, NS, AZ Bekele, YY Chandler, and CJ Gebhart, 2015. Molecular epidemiology of novel pathogen “Brachyspira hampsonii” reveals relationships between diverse genetic groups, regions, host species, and other pathogenic and commensal Brachyspira. J. Clin. Microbiol. PMID:26135863

 

Mirajkar N.S. and Gebhart C.J. Understanding the molecular epidemiology and global relationships of Brachyspira hyodysenteriae from swine herds in the United States: A Multi-Locus Sequence Typing Approach. PLoS ONE 9(9): e107176. doi: 10.1371/journal.pone.0107176

 

Vannucci FA, Linhares DC, Barcellos DE, Lam HC, Collins J, Marthaler D. Identification and Complete Genome of Seneca Valley Virus in Vesicular Fluid and Sera of Pigs Affected with Idiopathic Vesicular Disease, Brazil. Transbound Emerg Dis. 2015 Dec;62(6):589-93. doi: 10.1111/tbed.12410. Epub 2015 Sep 7. PMID: 26347296

 

Borewicz KA, Kim HB, Singer RS, Gebhart CJ, Sreevatsan S, Johnson T, Isaacson RE. Changes in the porcine intestinal microbiome in response to infection with Salmonella enterica and Lawsonia intracellularis. Plos One 2015 Oct 13;10(10):e0139106. doi: 10.1371/journal.pone.0139106. eCollection 2015.

 

Homwong N, Jarvis MC, Lam HC, Diaz A, Rovira A, Nelson MI, Marthaler D. Characterization and evolution of porcine deltacoronavirus in the United States. Prev Vet Med. 2015 Nov 10. pii: S0167-5877(15)30045-3. doi: 10.1016/j.prevetmed.2015.11.001. [Epub ahead of print] PMID: 26611652.

 

Jarvis MC, Lam HC, Zhang Y, Wang W, Hesse RA, Hause BM, Vlasova A, Wang Q, Zhang J, Nelson MI, Murtaugh MP, Marthaler D. Genomic and evolutionary inferences between American and global strains of porcine epidemic diarrhea virus. Prev Vet Med. 2015 Nov 10. pii: S0167-5877(15)30041-6. doi: 10.1016/j.prevetmed.2015.10.020. [Epub ahead of print] PMID: 26611651.

 

Johnson, T., Singer, R., Isaacson, R., Danzeisen, J., Lang, K., Kobluk, K., Rivet, B., Borewicz, K., Frye, J., Englen, M., Anderson, J., and Davies, P. In vivo transmission of an IncA/C plasmid in Escherichia coli depends on tetracycline concentration, and acquisition results in variable cost of fitness. Appl. Environ. Microbiol. 10, 2015.

 

Pragman, A., Isaacson, R., Wendt, C., and Reilly, C. A method for determining taxonomical contributions to group differences in microbiomic investigations. Journal of Computational Biology, Accepted March 14, 2015.

 

Kim, H. B. and Isaacson, R. E. The pig gut microbial diversity: understanding the pig gut microbial ecology through the next generation high throughput sequencing. Vet Microbiol. 177:242-251 (2015).

 

Pérez-Méndez A, Chandler JC, Paar J, Doolittle M, Bisha B, Goodridge LD. 2015. Field-based evaluation of an integrated F-RNA coliphage concentration and detection method. Applied and Environmental Microbiology (submitted).

 

Chandler JC, Manley WA, Pérez-Méndez A, Bisha B, Adkins JA, Henry CS, Prenni JE, Goodridge LD. 2015. Molecular and phenotypic properties of cantaloupe associated Listeria monocytogenes. Food Microbiology (submitted).

 

Johnson DC, Bzdek JP, Fahrenbruck CR, Chandler JC, Bisha B, Goodridge LD, Hybertson BM. 2015. An innovative non-thermal plasma reactor to eliminate microorganisms in water. Desalination and Water Treatment. DOI: 10.1080/19443994.2015.1024752.

 

Bisha B, Brehm-Stecher BF. 2014. Flow cytometry for rapid detection of Salmonella spp. in seed sprouts. ScienceOpen Research. DOI: 10.14293/S2199-1006.1.SOR-LIFE.AJ19WR.v1.

 

 

Wijemanne, P., J. Xing, E. M. Berberov, D. B. Marx, D. H. Francis, and R. A. Moxley. Relationship between heat-labile enterotoxin secretion capacity and virulence in wild type porcine-origin enterotoxigenic Escherichia coli strains. PLoS One 10(3):e0117663.

 

Stromberg, Z. R., G. L. Lewis, D. B. Marx, and R. A. Moxley. 2015. Comparison of enrichment broths for supporting growth of Shiga toxin-producing Escherichia coli. Curr. Microbiol. 71:214-219.

 

Stromberg, Z. R., N. Baumann, G. L. Lewis, N. Sevart, N. Cernicchiaro, D. G. Renter, D. B. Marx, R. K. Phebus, and R. A. Moxley. 2015. Prevalence of enterohemorrhagic Escherichia coli O26, O45, O103, O111, O121, O145, and O157 on hides and carcass surfaces of beef feedlot cattle at harvest. Foodborne Pathog. Dis. 12:631-638.

 

Stromberg, L. R., Z. R. Stromberg, A. Banisadr, S. W. Graves, R. A. Moxley, and H. Mukundan. 2015. Purification and characterization of lipopolysaccharides from six strains of non-O157 Shiga toxin-producing Escherichia coli. J. Microbiol. Methods 116:1-7.

 

Moxley, R. A., Z. R. Stromberg, G. L. Lewis, J. D. Loy, B. W. Brodersen, I. R. Patel, and J. Gangiredla. 2015. Hemorrhagic colitis associated with enterohemorrhagic Escherichia coli O165:H25 infection in a yearling feedlot heifer. JMM Case Reports 2:1-6. doi:10.1099/jmmcr.0.005004.

 

Stromberg, Z. R., G. L. Lewis, S. S. Aly, T. W. Lehenbauer, N. Cernicchiaro, N. and R. A. Moxley. Prevalence and concentration of enterohemorrhagic Escherichia coli in culled dairy cattle at harvest. J. Food Prot. Accepted and in press.

 

Chopyk, J., R. Moore, Z. R. Stromberg, G. L. Lewis, D. G. Renter, N. Cernicchiaro, R. A. Moxley, and K. E. Wommack. Presence of pathogenic Escherichia coli is correlated with bacterial community diversity and composition on pre-harvest cattle hides. Microbiome. Submitted.

 

Stromberg, L. R., N. W. Hengartner, K. L. Swingle, R. A. Moxley, S. W. Graves, G. A. Montaño, H. Mukundan. Membrane insertion for the detection of lipopolysaccharides: exploring the dynamics of amphiphile-in-lipid assays. PLoS Pathog. Submitted.

 

Stromberg, Z. R., G. L. Lewis, and R. A. Moxley. Comparison of agar media for the detection and quantification of Shiga toxin-producing Escherichia coli O26, O45, O103, O111, O121, O145, and O157 in cattle feces. J. Food Prot. Submitted.

 

Scaria J, Suzuki H, Ptak CP, Chen JW, Zhu Y, Guo XK, Chang YF. Comparative genomic and phenomic analysis of Clostridium difficile and Clostridium sordellii, two related pathogens with differing host tissue preference. BMC Genomics. 2015 Jun 10;16:448.

 

Okda F, Liu X, Singrey A, Clement T, Nelson J, Christopher-Hennings J, Nelson EA, Lawson S. Development of an indirect ELISA, blocking ELISA, fluorescent microsphere immunoassay and fluorescent focus neutralization assay for serologic evaluation of exposure to North American strains of Porcine Epidemic Diarrhea Virus. BMC Vet Res. 2015 Aug 1;11:180.

 

Zhou M, Duan Q, Li Y, Yang Y, Hardwidge PR, Zhu, G. Membrane cholesterol plays an important role in enteropathogen adhesion and the activation of innate immunity via flagellin-TLR5 signaling, Archives of Microbiology, 2015, May 3.

 

Kumar A, Hays M, Lim F, Foster LJ, Zhou M, Zhu G, Miesner T, Hardwidge PR. Protective enterotoxigenic Escherichia coli antigens in a murine intranasal challenge model, PLoS Neglected Tropical Diseases, 2015, Aug 5;9(8):e0003924.

 

Zhou M, Yang Y, Chen P, Hu H, Hardwidge PR, Zhu G. More than a locomotive organelle: flagella in Escherichia coli, Applied Microbiology and Biotechnology, 2015.

 

Zhang Y, Vadlani, PV, Kumar A, Hardwidge PR, Govind R, Tanaka T, Kondo A. Enhanced D-lactic acid production from renewable resources using engineered Lactobacillus plantarum, Applied Microbiology and Biotechnology, 2015.

 

Cull CA, Renter DG, Bello N.B., Ives S.E., Babcock A.H. Performance and carcass characteristics of commercial feedlot cattle from a study of vaccine and direct-fed microbial effects on E. coli O157:H7 fecal shedding. J An Sci. 2015; 93(6): 3144-3151.

 

Dewsbury DM, Renter DG, Shridhar PB, Noll LW, Shi X, Nagaraja TG, Cernicchiaro N. Summer and winter prevalence of Shiga toxin-producing Escherichia coli (STEC) O26, O45, O103, O111, O121, O145, and O157 in feces of feedlot cattle. Foodborne Pathog Dis. 2015; (8):726-732.

 

Noll LW, Baumgartner WC, Shridhar PB, Cull CA, Dewsbury D, Shi,X, Cernicchiaro N, Renter DG, Nagaraja TG. Pooling of immunomagnetic separation beads does not affect sensitivity of detection of six serogroups of Shiga toxin-producing Escherichia coli in cattle feces. Journal of Food Protection (accepted for publication).

 

Ison S, Delannoy S, Bugarel , Nagaraja TG, Renter DG, den Bakker H, Nightingale K, Fach P, Loneragan G. Targeted amplicon sequencing for SNP genotyping of attaching and effacing Escherichia coli O26:H11 cattle strains using a high-throughput library preparation technique. Appl Enviorn Microbiol (accepted for publication).

 

Noll LW, Shridhar PB, Dewsbury DM, Shi X, Cernicchiaro N, Renter DG, Nagaraja TG. A comparison of culture- and PCR-based methods to detect six major non-O157 serogroups of Shiga toxin-producing Escherichia coli in cattle feces. PLoS One. 2015; 10(8):e0135446.

 

Noll LW, Shridhar PB, Shi X, An B, Cernicchiaro N, Renter DG, Nagaraja TG, Bai J. A four-plex real-time PCR assay, based on rfbE, eae, stx1, and stx2 genes, for the detection and quantification of Escherichia coli O157 in cattle feces. Foodborne Pathogens and Disease 12(9):787-794.

 

Shivanna V, Kim Y, Chang KO. Bile acid-mediated Activation of the Acid Sphingomyelinase Facilitates Endosomal Escape of Porcine Enteric Calicivirus. 2015. Virology. 483:218-28.

 

Yunjeong Kim, Anushka C. Galasiti Kankanamalage, Kyeong-Ok Chang, William C. Groutas, Recent Advances in the Discovery of Norovirus Therapeutics. J Med Chem. 2015 Aug 17.

 

Kim Y, Shivanna V, Hua DH, Groutas WC, and Chang KO. Broad-spectrum protease inhibitors against 3C-like proteases of feline coronaviruses and feline caliciviruses.2015. J Virol. 89(9):4942-50.

 

Kankanamalage AM. Uy WP, Mandadapu SR, Alliston KR, Chang KO, Kim Y, Lovell S, Groutas WC. Structure-Based Design and Optimization of Dipeptidyl Inhibitors of Norovirus 3CL Protease. Structure-Activity Relationships and Biochemical, X-ray Crystallographic and Cell-Based Studies. 2015. J Med Chem. 58(7):3144-55.

 

Toro M, Cao G, Rump L, Nagaraja TG, Meng J, Gonzalez-Escalona N. Genome Sequences of 64 Non-O157:H7 Shiga Toxin-Producing Escherichia coli Strains. Genome Announc. 2015 Oct 1;3(5). pii: e01067-15. doi: 10.1128/genomeA.01067-15.

 

Amachawadi RG, Scott HM, Vinasco J, Tokach MD, Dritz SS, Nelssen JL, Nagaraja TG. Effects of In-Feed Copper, Chlortetracycline, and Tylosin on the Prevalence of Transferable Copper Resistance Gene, tcrB, Among Fecal Enterococci of Weaned Piglets. Foodborne Pathog Dis. 2015 Aug;12(8):670-8. doi: 10.1089/fpd.2015.1961.

 

Amachawadi RG, Nagaraja TG. First Report of Anaerobic Isolation of Salmonella enterica from Liver Abscesses of Feedlot Cattle. J Clin Microbiol. 2015 Sep;53(9):3100-1. doi: 10.1128/JCM.01111-15.

 

Ison SA, Delannoy S, Bugarel M, Nightingale KK, Webb HE, Renter DG, Nagaraja TG, Loneragan GH, Fach P. Genetic Diversity and Pathogenic Potential of Attaching and Effacing Escherichia coli O26:H11 Strains Recovered from Bovine Feces in the United States. Appl Environ Microbiol. 2015 Jun;81(11):3671-8. doi: 10.1128/AEM.00397-15.

 

Agga GE, Scott HM, Vinasco J, Nagaraja TG, Amachawadi RG, Bai J, Norby B, Renter DG, Dritz SS, Nelssen JL, Tokach MD. Effects of chlortetracycline and copper supplementation on the prevalence, distribution, and quantity of antimicrobial resistance genes in the fecal metagenome of weaned pigs. Prev Vet Med. 2015 May 1;119(3-4):179-89.doi: 10.1016/j.prevetmed.2015.02.008.

 

Amachawadi RG, Scott HM, Aperce C, Vinasco J, Drouillard JS, Nagaraja TG. Effects of in-feed copper and tylosin supplementations on copper and antimicrobial resistance in faecal enterococci of feedlot cattle. J Appl Microbiol. 2015 Jun;118(6):1287-97. doi: 10.1111/jam.12790.

 

Kumar A, Menon S, Nagaraja TG, Narayanan S. Identification of an outer membrane protein of Fusobacterium necrophorum subsp. necrophorum that binds with high affinity to bovine endothelial cells. Vet Microbiol. 2015 Mar 23;176(1-2):196-201. doi: 10.1016/j.vetmic.2014.12.015.

 

Amachawadi RG, Scott HM, Nitikanchana S, Vinasco J, Tokach MD, Dritz SS, Nelssen JL, Goodband RD, Nagaraja TG. Nasal carriage of mecA-positive methicillin-resistant Staphylococcus aureus in pigs exhibits dose-response to zinc supplementation. Foodborne Pathog Dis. 2015 Feb;12(2):159-63. doi: 10.1089/fpd.2014.1851.

 

Guard J, Sanchez-Ingunza R, Shah DH, Rothrock MJ, Gast RK, Jones DR. Recovery of Salmonella enterica serovar Enteritidis from hens initially infected with serovar Kentucky. Food Chem. 189:86-92, 2015. PubMed PMID: 26190605.

 

 

Sheng H, Shringi S, Baker KN, Minnich SA, Hovde CJ, Besser TE. Standardized E. coli O157:H7 exposure studies in cattle: Evidence that bovine factors do not drive increased summertime colonization. Appl Environ Microbiol. 2015 Nov 25. pii: AEM.02839-15. [Epub ahead of print] PubMed PMID: 26607594.

 

Spencer SE, Besser TE, Cobbold RN, French NP. 'Super' or just 'above average'? Supershedders and the transmission of Escherichia coli O157:H7 among feedlot cattle. J R Soc Interface. 2015 Sep 6;12(110):0446. doi: 10.1098/rsif.2015.0446. PubMed PMID: 26269231; PubMed Central PMCID: PMC4614454.

 

Zhao Z, Eberhart LJ, Orfe LH, Lu SY, Besser TE, Call DR. Genome-Wide Screening Identifies Six Genes That Are Associated with Susceptibility to Escherichia coli Microcin PDI. Appl Environ Microbiol. 2015 Oct;81(20):6953-63. doi: 10.1128/AEM.01704-15. Epub 2015 Jul 24. PubMed PMID: 26209678; PubMed Central PMCID: PMC4579430.

 

Davis MA, Sischo WM, Jones LP, Moore DA, Ahmed S, Short DM, Besser TE. Recent Emergence of Escherichia coli with Cephalosporin Resistance Conferred by blaCTX-M on Washington State Dairy Farms. Appl Environ Microbiol. 2015 Jul;81(13):4403-10. doi: 10.1128/AEM.00463-15. Epub 2015 Apr 24. PubMed PMID: 25911480; PubMed Central PMCID: PMC4475894.

 

Jaros P, Cookson AL, Campbell DM, Duncan GE, Prattley D, Carter P, Besser TE, Shringi S, Hathaway S, Marshall JC, French NP. Geographic divergence of bovine and human Shiga toxin–producing Escherichia coli O157:H7 genotypes, New Zealand. Emerg Infect Dis. 2014 Dec;20(12):1980-9. PubMed PMID: 25568924; PubMed Central PMCID: PMC4257794.

 

Mellor GE, Fegan N, Gobius KS, Smith HV, Jennison AV, D'Astek BA, Rivas M, Shringi S, Baker KN, Besser TE. Geographically distinct Escherichia coli O157 isolates differ by lineage, Shiga toxin genotype, and total shiga toxin production. J Clin Microbiol. 2015 Feb;53(2):579-86. doi: 10.1128/JCM.01532-14. Epub 2014 Dec 10. PubMed PMID: 25502531; PubMed Central PMCID: PMC4298522.

 

Pereira RV, Siler JD, Ng JC, Davis MA, Warnick LD. Effect of preweaned dairy calf housing system on antimicrobial resistance in commensal Escherichia coli. J Dairy Sci. 2014 Dec;97(12):7633-43.

 

 

 

Book chapters

 

Marthaler D, Bohac A, Becker A, Peterson N. Next Generation Sequencing for Porcine Coronaviruses. Leyi Wang (Eds): Animal Coronaviruses, 978-1-4939-3412-6

 

Moxley, R. A., and G. R. Acuff. Chapter 22, Peri- and post-harvest factors in the control of Shiga toxin-producing Escherichia coli in beef. Enterohemorrhagic Escherichia coli, 2^nd Ed., American Society for Microbiology Press, Washington, D.C., pp. 437-456.

01/30/2017