07/18/2001

Refereed Articles:



Angle, J.S., R.L. Chaney, A. J.M. Baker, Y.-M. Li, R. Reeves, V. Volk, R. Roseberg, E. Brewer, S.Burke, and J.P. Nelkin. 2000. Developing commercial phytoextraction technologies: Practical considerations. South African J. Sci. (In press).



Bressan, W., C.H.S. de Carvalho, and D.M. Sylvia. 2000. Inoculation of somatic embryos of sweet potato with an arbuscular mycorrhizal fungus improves embryo survival and plantlet formation. Can. J. Microbiol. 46:741-743.;

Bever, J. D., P. A. Schultz, A. Pringle, and J. B. Morton. 2001. Arbuscular mycorrhizal fungi: More diverse than meets the eye and the ecological tale of why. BioScience (In press)



Burke, S., J.S. Angle, R.L. Chaney and S. Cunningham. 2000. Arbuscular Mycorrhizae effects on heavy metal uptake by corn. Inter. J. of Phytoremediation. 2:23-29.



Chaney, R.L., Y.-M. Li, J.S. Angle, A.J.M. Baker, R.D. Reeves, S.L. Brown, F.A. Homer, M. Malik, and M. Chin. 2000. Improving Metal Hyperaccumulator Wild Plants to Develop Commercial Phytoextraction Systems: Approaches and Progress. pp. 131-160. In N Terry and G.S. Banuelos (eds.) Phytoremediation of Contaminated Soil and Water. CRC Press, Boca Raton, FL.



Chaney, R.L., J.A. Ryan, U. Kukier, S.L. Brown, G. Siebielec, M. Malik and, J.S. Angle. 2000. Heavy Metal Aspects of Compost Use. Pp. In P.J. Stofella and B.A. Kahn (eds). Compost Utilization in Horticultural Cropping Systems. CRC Press, Boca Raton, FL.



Coffin, R. B., P. H. Miyares, C.A. Kelly, L. A. Cifuentes, and C. M. Reynolds. 2001. 13C and 15N Isotope Analysis of TNT; Two Dimensional Source Identification. Env. Tox. Chem. (In press)



Delorme, T., J.S. Angle, F. Coale, R. Chaney. 2001. Phosphorus accumulation by select plant species. Inter. J. Phytoremediation (In press).



Feng, Y., D. M. Stoeckel, E. van Santen, and R. H. Walker. 2001. Effects of subsurface aeration and trinexapac-ethyl application on soil microbial communities in a creeping bentgrass putting green. Biol.Fertil. Soils (In review)



Franke-Snyder, M., D. D. Douds, L. Galvez, J. G. Phillips, P. Wagoner, L. Drinkwater, and J. B. Morton. 2001. Diversity of communities of arbuscular mycorrhizal (AM) fungi present in conventional versus low-input agricultural sites in eastern Pennsylvania, USA. Applied Soil Ecol. 16:35-48.



Gagliardi, J.V., J.S. Angle, J.J. Germida, R.C. Wyndham, C.P. Chanway, R.J. Watson, C. Greer, H.H. Yu, T. McIntyre, M.A. Levin, E. Russek-Choen, S. Rosolen, J. Nairn, A. Seib, T. Martin-Heller, and G. Wisse. 2001 Intact soil-core microcosms for pre-release testing of introduced microbes: Comparison with multi-site field releases in diverse soils and climates. Can. J. Microbiol. (In press).



Gagliardi, J.U., J. Buyer, J.S. Angle, and E. Russek-Cohen. 2001. Comparison of soil microbial community structural and functional analyses following inoculation of a genetically engineered and a non-engineered pseudomonas to wheat roots in diverse soils. Soil Sci. Soc. Am. J. (In Press).



Graham, J. H. 2001. What do root pathogens see in mycorrhizas? New Phytologist 148:357-359.



Graves, Alexandria K., Charles Hagedorn, Alison Teetor, Michelle Mahal, Amy M. Bowman, and Raymond B. Reneau, Jr. Determining sources of fecal pollution in water for a rural Virginia community. Appl. Environ. Microbiol. (In review)



Haney, R.L., A.J. Franzluebbers, F.M. Hons and D.A. Zuberer. 2001. Molar concentration of K2SO4 and soil pH affect estimation of extractable C with chloroform fumigation extraction. Soil Biol. Biochem. (In press)



Haney, R.L., S.A. Senseman, F.M. Hons, D.A. Zuberer. 2000. Effect of Glyphosate on soil microbial activity and biomass. Weed Science. 48: 89?93.Hartel, P. G., W. I. Segars, J. D. Summer, J. V. Collins, A. T. Phillips, and E. Whittle. 2000. Survival of fecal coliforms in fresh and stacked broiler litter. J. Appl. Poultry Res. 9: 505-512.



Janstfer, A. G. and D. M. Sylvia. Isolation, culture and detection of arbuscular mycorrhizal fungi. In: Manual of environmental microbiology. C. J. Hurst et al. (eds.). 2nd Edition. American Society of Microbiology. Washington D.C. (In press)



Lanfranco, L., V. Bianciotto, E. Lumini, M. Souza, J. B. Morton, and P. Bonfante. 2001. A combined morphological and molecular approach to characterize isolates of arbuscular mycorrhizal fungal in Gigaspora (Glomales). New Phytology (In press)



Malik, M., R.L. Chaney, E. Brewer, Y. Li and J. Angle. 2000. Phytoextraction of soil cobalt using hyperaccumulator plants. Inter. J. Phytoremediation 2:19-33.



Malik, M., R.L. Chaney, E.P. Brewer and J.S. Angle. 2001. Phytoextraction of soil cobalt using hyperaccumulator plants. Int. J. Phytoremediation. (In press).



Morton, J. B. and D. Redecker. 2001. Two new families of Glomales, Archaeosporaceae and Paraglomaceae, with two new genera Archaeospora and Paraglomus, based on concordant molecular and morphological characters. Mycologia 93:181-195



Oka, N., P.G. Hartel, O. Finley-Moore, J. Gagliardi, D. Zuberer, J. Fuhrmann, J.S. Angle and H. Skipper. 2000. Misidentification of soil bacteria by fatty acid methyl ester (FAME) and BIOLOG. Biol. Fertil. Soils 32: 256-258.



Olexa, T. J., P. G. Hartel, J. J. Fuhrmann, and H. A. Mills. 2001. Whole soil FAME analysis to assess benomyl effects on microbial community structure in juniper. Plant Health Prog. (In review)



Peacock, A.D., M.D. Mullen, D.B. Ringelberg, D.D. Tyler, D.B. Hedrick, P.M. Gale, and D.C. White. 2001. Soil Microbial Community Response to Dairy Manure or Ammonium Nitrate Applications. Soil Biol. Biochem. 33:1011-1019.;



Redecker, D., J. B. Morton, and T. D. Bruns. 2000. Ancestral lineages of arbuscular mycorrhizal fungi (Glomales). Molecular Phylogenetics and Evolution 14:276-284.



Redecker, D., J. B. Morton, and T. D. Bruns. 2000. Molecular phylogeny of Glomus sinuosum and Sclerocystis coremioides places both taxa firmly in Glomus. Mycologia 92:282-285.



Ryan, M. H. and Graham, J. H. 2002. Arbuscular mycorrhizal fungi in agriculture: from theory to practice. Plant Soil (special issue): (In review).



Schrvder, E. C. 2001. Importance of Symbiotic Nitrogen Fixation in Tropical Forage Legume Production. In: Tropical Forage Plants: Development and Use. Eds. Sotomayor-Rmos, A. and Pitman, W. D., CRC Press, Boca Raton. Chapter 15, p 251-268.



Stutz, J. C., R. Copeman, C. A. Martin, and J. B. Morton. 2000. Patterns of species composition and distribution of arbuscular mycorrhizal fungi in arid regions of southwestern North America and Namibia, Africa. Canad. J. Bot. 78:237-245



Saunders, J. A., M.-K. Lee, C. M. Morton, Y. Feng, J. C. Rutherford, V. A. Bennett, and I. Thompson. Behavior of metal(loids) during bacterial sulphate reduction in contaminated groundwater. Applied Geochemistry (In review)



Sylvia, D.M., A.K. Alagely, D.O. Chellemi, and L.W. Demchenko. Impact of AM fungi on tomato competition with bahiagrass. Biol. Fertil. Soils (In review)



Sylvia, D.M. and D.O. Chellemi. 2001. Interactions among root-inhabiting fungi and their implications for biological control of root pathogens. Advances in Agronomy 73:1-133.



White, K. D., C. M. Reynolds, D. B. Ringelberg, J.P. Laible, K. L. Foley, and L. B. Perry. 200_. Low Temperature Microbial Activity in River Systems. (Accepted, revision as ERDC report)



Zuberer, D.A., 2001. Nitrogen fixation (nonsymbiotic) in soils. Encyclopedia of Environmental Microbiology. John Wiley & Sons, NY. In press.



Conference Proceedings and Abstracts:



Bowman, A. M., C. Hagedorn, and K. Hix. 2000. Determining sources of fecal pollution in the Blackwater River watershed. p. 44-54. In T. Younos and J. Poff (ed.), Abstracts, Virginia Water Research Symposium 2000, VWRRC Special Report SR-19-2000, Blacksburg.



Chaney, R.L., S.L. Brown, Y.-M Li, J.S. Angle, T.I. Stucaynksi, W.L. Daniels, C.L. Henry, G. Siebielec, M. Malik, James A. Ryan and Harry Compton. 2001. Progress in Risk Assessment for Soil Metals, and In situ ?Phytoremediation: State of the Science.? May 1-2, 2000. Boston, MA. (In Press).



Chaney, R.L., S.L. Brown, J.S. Angle, T.I. Stuczynski, W.L. Daniels, C.L. Henry, G. Siebielec, Y.-M. Li, M. Malik, J.A. Ryan and H. Compton. 2000 In situ Remediation/ReclamationRestoration of Metals Contaminated Soils using Tailor-Made Biosolids Mixtures. Chapter 2; 24 pp. In Proc. Symp. Mining, Forest and Land Restoration: The Successful Use of Residuals/Biosolids/Organic Matter for Reclamation Activities (Denver, CO, July 17-20, 2000). Rocky Mountain Water Environment Association, Denver, CO.



Chaney, R.L., J.A. Ryan, Y.-M.Li, and J.S. Angle. 2001. Transfer of cadmium through plants to the food chain. In J.K. Syers and M. Gochfeld (eds.) Proceedings of the SCOPE Workshop on Environmental Cadmium in the Food Chain: Sources, Pathways, and Risks, (13-16 Sept., 2000) Belgian Academy of Sciences, Brussels.



Feng, Y., D. W. Reeves, C. H. Burmester, A. C. Motta, and G. Wu. 2000. Comparison of phospholipid and whole-soil fatty acid profiles of soil microbial communities. Abstracts of 2000 annual meetings of ASA-CSSA-SSSA, p.261.



Funk, A. L., M. B. Gregory, E. A. Frick, and P. G. Hartel. 2000. Microbial source tracking using ribosomal RNA typing in the Chattahoochee River National Recreation Area Watershed, Metropolitan Atlanta, Georgia?Study design and preliminary results. Building capabilities for monitoring and assessment in public health microbiology, U. S. Geological Survey, March 14-16, Columbus, OH.



Entry, J. A., P. G. Hartel, J. L. Hill, and J. D. Summer. 2001. Ribotyping of Escherichia coli isolates from Rock Creek Watershed, Idaho. American Society for Microbiology, May 20-24, Orlando, FL.



Godfrey, D. G., and P. G. Hartel. 2001. Geographic variability of Escherichia coli ribotypes from swine feces in Georgia and Idaho. National Conference on Undergraduate Research, March 15-17, Lexington, KY.



Graham, J. H., Jifon, J. L., Drouillard, and Syvertsen, J. P. 2001. Growth depression of mycorrhizal ctrus seedlings grown at high P supply is mitigated by elevated CO2. Proc. 3rd Intern. Conf. On Mycorrhizas (ICOM3). Univ. Adelaide, South Australia (In press).



Haney, R.L., A.J. Franzluebbers, F.M. Hons and D.A. Zuberer. 2000. Soil CO2 evolution: field moist vs. dried and rewetted soils. Agron. Abst. Pg. 256. Minneapolis, MN.



Hartel, P. G., J. D. Summer, W. I. Segars, and J. Entry. 2000. Geographic variability of Escherichia coli from cattle and swine. American Society of Agronomy Meetings, November 5-9, Minneapolis, MN.



Hartel, P. G., A. L. Funk, J. D. Summer, J. L. Hill, E. A. Frick, and M. B. Gregory. 2001. Ribotype diversity of Escherichia coli isolates from the Upper Chattahoochee River Watershed, Georgia. American Society for Microbiology, May 20-24, Orlando, FL.



Hill, J. L., P. G. Hartel, W. I. Segars, and P. Bush. 2001. Ribotyping to determine the source of fecal coliform contamination in three household wells near Cochran, Georgia. p. 743-746. In: K. J. Hatcher (ed.) Proceedings of the 2001 Georgia Water Resources Conference, March 26-27, University of Georgia, Athens.



Jenkins, M. B., P. G. Hartel, T. J. Olexa, and J. A. Stuedemann. 2000. Temporal variability of Escherichia coli ribotypes from cattle. American Society of Agronomy Meetings, November 5-9, Minneapolis, MN.



Kern, J., B. Petrauskas, P. McClellan, V. O. Shanholtz, and C. Hagedorn. 2000. Bacterial source tracking: a tool for total maximum daily load development. p.157-172. In T. Younos and J. Poff (ed.), Abstracts, Virginia Water Research Symposium 2000, VWRRC Special Report SR-19-2000, Blacksburg.



Lee, M.-K., Saunders, J. A., Morton, C., and Feng, Y., 2000. The biogeochemistry of heavy metals under artificial sulfate-reducing conditions, American Geophysical Union Fall Meeting Abstracts, p. 285, San Francisco, California, December 15-19.



Peach, A.E., J.J. Fuhrmann and D.A. Zuberer. 2000. Influence of mine reclamation on microbial biodiversity. Agron. Abst. Pg. 261. Minneapolis, MN.



Reynolds, C. M., B. A. Koenen, L. B. Perry, K. L Foley, D. B. Ringelberg, and K. J. McCarthy. 2001 . Phytoremediation in Korea: Evidence for Rhizosphere-Enhanced PAH Degradation Sixth International Symposium, In-Situ and Onsite Bioreclamation. June 4-7, San Diego CA. Battelle Press. (In Press)



Reynolds C. M, L. B. Perry, B. A. Koenen, K. L. Foley, D.C Wolf, and K. J. McCarthy 2000. Phytoremediation in Alaska and Korea. EPA - Phytoremediation: State of Science Conference. Proceedings of a Conference held in Boston MA: May 1-2.



Reynolds, C.M. and B.A. Koenen, 2000. Rhizosphere-Enhanced Remediation Project

at Osan Air Base, South Korea, April 2000. CONXXX.



Reynolds, C.M. and B.A. Koenen, 2000. Rhizosphere-Enhanced Remediation Project

at Kunsan Air Base, South Korea, April 2000. CONXXX.



Skipper, H. D., J. H. Kim, K. Xiong, D. T. Gooden, and T. L. Lalande. 2001. Diversity of Rhizobacteria from Weeds. Abstracts, p. 26. Weed Science Society of America, Lawrence, KS.



Thoma, G.J., T.B. Lam, E.N. Dempsey, D.C. Wolf, and C.A. Beyrouty. 2000. A mathematical model of phytoremediation of oil contaminated soil. In Proc. Seventh International Petroleum Environ. Conf. Albuquerque, NM. 7-10 Nov. 2000. Integrated Petroleum Environmental Consortium, Tulsa, OK.



White, Jr., P.M., D.C. Wolf, and G.J. Thoma. 2000. Influence of soil amendments on plant growth in a petroleum-contaminated soil. p. 10. In Volume 4 Abstracts Arkansas Crop Protection Assoc. 30 Nov. - 1 Dec. 2000. Fayetteville, AR.



Zuberer, D.A., J. Brien and A. Fincher. 2000. Water-extractable carbon in sand-based rootzones of dwarf bermudagrasses. Agron. Abst. Pg. 256. Minneapolis, MN.

08/15/2002

Angle, JS, et al. 2001. Developing commercial phytoextraction technologies: Practical considerations. S Afr J Sci 97:619-623.



Chang, Y-J, et al. 2001. Impact of herbicides on abundance & structure of indigenous _-subgroup ammonia oxidizer communities in soil microcosms. Environ Toxicol Chem 20:2462-2468.



Delorme, T, et al. 2000. P accumulation by select plant species. J Phytoremediation. 2:344-349.



Gagliardi, JV, et al. 2001. Structural & functional analysis of whole-soil microbial communities for risk & efficacy testing following microbial inoculation of wheat roots in diverse soils. Soil Biol Biochem 33:25-40.



Haney, RL, et al. 2001. Molar concentration of K2SO4 & soil pH affect estima of extractable C with chloroform fumigation-extraction. Soil Biol Biochem 33:1501-1507.



Hartel, PG, et al. 2002. Biogeographic variability of E. coli ribotypes from ID & GA. J Environ Qual 31:1273-1278.



Jarstfer, AG, DM Sylvia. 2001. Isolation, culture & detection of arbuscular mycorrhizal fungi. p 535-542. Man of Environ Microbiol. 2nd Ed ASM Wash, DC.



Jifon, JL, et al. 2002. Growth depression of mycorrhizal citrus seedlings grown at high P supply is mitigated by elevated CO2. New Phytologist 153:133-142.



Kubikova, et al. 2001. Mycorrhizal impact on osmotic adjustment in Ocimum basilicum during a lethal drying episode. J Plant Physiol 158:1227-1230.



LaPara, TM, et al. 2001. Aerobic biolog treatment of pharmaceutical wastewater: Effect of temperature on COD removal & bacterial community development. Water Res 35:4417-4425.



Maldonado, JD, et al. 2001. Arbuscular mycorrhiza inoculum potential in natural & managed tropical montane soils in Costa Rica. Trop Agric 77:27-32.



Rickman, RW, et al. 2001. CQESTR: A model to estimate carbon sequestration in agric soils. J Soil Water Conser 56:237-246.



Schutter, ME, JJ Fuhrmann. 2001. Soil microbial community responses to fly ash amendment as revealed by analyses of whole soils & bacterial isolates. Soil Biol Biochem 33:1947-1958.



Sigler, WV, et al. 2001. Fate of biolog control agent Pseudomonas aureofaciens after application to turgrass. Appl Environ Microbiol 67:3542-3548.



Sylvia, DM, et al. 2001. Arbuscular mycorrhizal fungi influence tomato competition with bahiagrass. Biol Fertil Soils 34:448-452.



Sylvia, DM, DO Chellemi. 2001. Interactions among root-inhabiting fungi & their implications for biolog control of root pathogens. Adv Agron 73:1-33.



van Berkum, P, JJ Fuhrmann. 2001. Characteristics of soybean bradyrhizobia for which serogroup affinities have not been identified. Can J Microbiol 47:519-525.



Wagner, SC, et al. 2001. Long-term survival of Glomus claroideum propagules from soil pot cultures under simulated conditions. Mycologia 93:815-820.



Wilbur, JD, et al. 2001. Statistical issues in the analysis of microbial communities in soil. Proc Appl Stat in Agric. KSU, Manhattan, KS.



Wheeler, AL, et al. 2002. Potential of Enterococcus faecalis as a human fecal indicator for microbial source tracking. J Environ Qual 31:1286-1293.



Zuberer, DA 2001. N fixation (nonsymbiotic) in soils. Ency of Envir Micro. John Wiley & Sons, NY.



Becker, J, et al. 2001. Bacterial community diversity & activity at a mixed waste contaminated site. ASM Abst.



Bezdicek, D, M Fauci, S Albrecht. 2002. Soil carbon & C sequestration under different cropping & tillage practices in the Pacific NW. p 101-107 Proc NW Direct Seed Cropping Systems Conf. WA.



Booth, AM, C Hagedorn. 2001. Determining sources of fecal pollution in Blackwater River watershed, Franklin Co, Va. Crop & Soil Environ News. HTTP://www.ext.vt.edu/news/periodicals/cses/2001-11/franklincounty.html.



Bowman, AM, K Mentz, C Hagedorn. 2001. Determining sources of fecal pollution in Blackwater River, Franklin Co, VA. ASM Abst.



Bulinski, DA, et al. 2001. Rhizosphere microbial population dynamics over 3 field seasons. ASA Abst.



Carrero-Colsn, et al. 2001. Microbial community response to perturbation of a model wastewater treatment system. ASM Abst.



Chaney, RL, et al. 2001. Heavy metal aspects of compost use. Compost Utilization in Hort Cropping Syst. CRC Press, FL.



Curtis, P, CH Nakatsu, A Konopka. 2001. Acid tolerance of chemoheterotrophic bacteria isolated from an acidic (pH 3) soil. ASM Abst.



DeQueiroz, GA, et al. 2001. Viability & nodulation with Bradyrhizobium cultures after 10.5 years storage in sterile distilled water. ASA Abst.



Entry, JA, et al. 2001. Ribotyping of E. coli isolates from Rock Creek Watershed, ID. ASA Abst.



Entry, JA, RE Sojka. 2002. Polyacrylamide removes coliform bacteria from animal wastewater. p 1-3. Res & Ext Regional Water Qual Conf. WA.



Feng, Y, et al. 2001. Tillage effects on soil microbial community composition in continuous cotton syst. ASA Abst.



Frederick, JR, et al. 2001. Rhizobacteria from soybean & corn in rotation. ASA Abst.



Graham, JH, et al. 2002. Growth depression of mycorrhizal citrus seedlings grown at high P supply is mitigated by elevated CO2. 3rd Int Conf Mycorrhizas. Australia.



Gooden, DT, et al. 2001. Rhizobacteria from peanuts in rotation. ASA Abst.



Graves, AK, M Mahal, C Hagedorn. 2001. Determining sources of fecal pollution for a rural unsewered community. ASM Abst.



Hartel, PG, JD Summer, WI Segars. 2002. Potential for ribotyping to delist watersheds exceeding their TMDLs for fecal coliforms. Watershed Mgmnt to Meet Emerging TMDL Environ Regs. TX.



Hartel, PG. 2002. Ribotyping enterococci. p 11-15. Microbiol Source Tracking Wkshop. CA.



Hagedorn, C, et al. 2002. Carbon source utilization profiles as a method to identify sources of fecal pollution in water. ASM Abst.



Hagedorn, C. 2002. Carbon source profiles, pulsed-field gel electrophoresis & antibiotic resistance analysis. p 55-58. Microbiol Source Tracking Wkshop. CA.



Haines, SK, SP Deng. 2001. Isolation & characterization of bacteria capable of biodegrading explosives characterization of nitroaromatic-degrading bacteria isolated from explosive contaminated soils. ASA Abst.



Haney, RL, AJ Franzluebbers, FM Hons, DA Zuberer. 2001. Is K2SO4 extraction of microbial carbon pH dependent? ASA Abst.



Haney, RL, et al. 2001. Soil CO2 evolution: Is drying & rewetting substrate induced respiration? ASA Abst.



Haney, RL, et al. 2001. The flush of CO2: drying & rewetting vs. chloroform fumigation. ASA Abst.



Homhaul, W, J Fuhrmann, P van Berkum. 2001. Polyphasic analysis of soybean & cowpea bradyrhizobia isolated from US and Thai soils. ASA Abst.



Hons, F, J Thomas, D Zuberer. 2001. Chem, phys & biol properties of turfgrass soils. CD ROM. Soil & Crop Sci, Tx A&M U.



Jerke, K, CH Nakatsu, A Konopka. 2001. Genetic & physiological analyses of lead resistance in Arthrobacter sp. isolated from contaminated soil. ASM Abst .



Kirkpatrick, WD, PM White, Jr, GJ Thoma, EE Gbur, CM Reynolds, DC Wolf. 2001. Plant response to N addition in a crude oil-contaminated soil. ASA Abst.



Konopka, A, et al. 2001. Microbial community structure & function in a biomass-recycle bioreactor. 9th Int Symp Microbial Ecol. Netherlands.



Kuntz, RL, et al. 2002. Field-testing Enterococcus faecalis for microbial source tracking. ASM Abst.



Mesa, C, J Fuhrmann, P van Berkum. 2001. Phenotypic & genetic analysis of soybean bradyrhizobia isolated from DE soils. ASA Abst.



Motta, ACV, et al. 2001. Mgmnt systems to improve soil quality for cotton production on a degraded silt loam soil in AL (USA). p 219-222. Proc 1st World Cong on Conserv Agric. Spain.



Motta, ACV, et al. 2001. Enhancement of soil microbial biomass in cotton production systems with conserv tillage. 24th Ann So Conserv Tillage Conf Sust Agr.



Nakatsu, CH, J Joynt, A Konopka. 2001. Impact of metal & organic waste on a microbial community. 9th Int Symp Microbial Ecol. Netherlands.



Nakatsu, CH, et al. 2001. Chromium resistance by Arthrobacter sp. cr15 isolated from metal contaminated soil. ASM Abst.



Ravnskov, S, Y Wu, JH Graham. 2001. The influence of different arbuscular fungi & P on gene expression of invertase & sucrose synthase in roots of maize. 3rd Int Conf on Mycorrhizas. Australia.



Reynolds, CM, et al. 2001. Microbial populations during remediation at 3 petroleum-contaminated Alaskan sites. In Situ and On-Site Bioremediation. 6th Int Symp. CA.



Rommesser, J, JJ Fuhrmann. 2002. A method to assess quorum sensing potential of microbial communities. Pat (prov) Appl #60/346,531.



Thies, JE, T Marsh, C Nakatsu. 2002. Workshop Manual: Molecular Techniques for Analysis of Microbial Community Structure in Soil & the Rhizosphere. Cornell U, Ithaca, NY.



Thoma, GJ, et al. 2001. Mathematical modeling of phytoremediation of petroleum contaminated soils. 8th Ann Int Petro Environ Conf TX.



Thoma, GJ, et al. 2001. A mathematical model of phytoremediation of crude oil-contaminated soils. In Situ & On-Site Bioremediation. 6th Int Symp. CA.



Wang, G, HD Skipper. 2001. Denitrifying rhizobacteria from bentgrass & bermudagrass USGA greens. ASA Abst.



Wheeler, AL, et al. 2001. Ribotyping fecal streptococci to differentiate between human & nonhuman sources. ASA Abst.



White Jr, PM, et al. 2001. Field study to evaluate phytoremediation of crude oil-contaminated soil. ASA Abst.



White Jr, PM, WD Kirkpatrick, DC Wolf, GJ Thoma, RM Reynolds. 2001. Phytoremediation of crude oil-contaminated soil. 8th Ann Int Petro Environ Conf. TX.



Wilbur, JD, et al. 2001. A bayesian approach to modeling & variable selection in high-dimensional multivariate binary data. 2001 Joint Stat Mtgs.



Wilbur, JD, et al. 2001. Variable selection in high-dimensional multivariate binary data. New Eng Stat Symp.



Wu, G, Y Feng, SA Boyd. 2001. Effects of biphenyl-degrading bacteria characteristics on bioavailability of sorbed biphenyl. ASA Abst.



Zurdo-Piqeiro, JL, et al. 2002. Identificacisn de cepas de rhizobia que nodulan leguminosas tropicales en suelos de Puerto Rico. IX Nat Mtg on N Fixation. Spain.

07/26/2004

Augé, R.M., J.L Moore, D.M Sylvia, and K. Cho. 2004. Mycorrhizal promotion of host stomatal conductance in relation to irradiance and temperature. Mycorrhiza 14:85-92.



Augé, R.M., J.L Moore, K. Cho, J.C. Stutz, D.M Sylvia, A.K. Al-Agely, A.M. Saxton. 2003. Relating drought resistance of Phaseolus vulgaris to soil and root colonization by mycorrhizal hyphae. J. Plant Physiol. 160: 1147-1156



Baldwin, B., C. H. Nakatsu, and L. Nies. 2003. Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl. Environ. Microbiol. 69:3350-3358.



Bray, S.R., K. Kitajima, and D.M. Sylvia. 2003. Mycorrhizae differentially alter growth, physiology, and competitive ability of an invasive shrub. Functional Ecology 13:565-574.



Darnault, C.J.G., P. Garnier, Y.-J. Kim, K. Oveson, T.S. Steenhuis, J.Y. Parlange, M.B. Jenkins, W.C. Ghiorse, and P.C. Baveye. 2003. Transport of Cryptosporidium parvum oocysts in the subsurface environment. Wat. Environ. Res. 75:113-120.



Darnault, C.J.G., T.S. Steenhuis, P. Garnier, Y.-J. Kim, M.B. Jenkins, W.C. Ghiorse, P.C. Baveye, and J.-Y. Parlange. 2004. Preferential flow and transport of Cryptosporidium parvum oocysts through the vadose zone: experiments and modeling. Vadose Zone J. 3:262-270.



Davis, K. C., C. H. Nakatsu, R. Turco, S. Weagant, and A. K. Bhunia. 2003. Analysis of environmental Escherichia coli isolates for virulence genes using the TaqManâ PCR system. J. Appl. Microbiol. 95: 612-620.



Devare, M, CM Jones, and JE Thies. 2004. Effects of CRW transgenic corn and tefluthrin on the soil microbial community: biomass, activity, and diversity. J. Environ. Qual. 33 (3): 837-843 and Cover photos.



Feng, Y., A.C. Motta, D.W. Reeves, C.H. Burmester, E. van Santen, and J.A. Osborne. 2003. Soil microbial communities under conventional-till and no-till continuous cotton systems. Soil Biol. Biochem. 35: 1693-1703.



Hahm, B.K., Y. Maldonado, E. Schreiber, A. K.Bhunia, and C. H.Nakatsu. 2003. Subtyping of clinical and environmental isolates of Escherichia coli by multiplex PCR, AFLP, rep-PCR, PFGE and ribotyping. J. Microbiol. Meth. 53:387-399.



Hartel, P. G., J. D. Summer, and W. I. Segars. 2003. Deer diet affects ribotype diversity of Escherichia coli for bacterial source tracking. Water Res. 37:3263-3268. Also selected for inclusion in the ?Virtual Journal of Environmental Sustainability? ().



Harwood, V. J., B. Wiggins, C. Hagedorn, R. D. Ellender, J. Gooch, J. Kern, M. Samadpour, A. H. Chapman and B. J. Robinson. 2003. Phenotypic library-based microbial source tracking methods: efficacy in the California collaborative study. J. Water & Health 01:153-156.



Jenkins, M.B. 2003. Rhizobial and Bradyrhizobial symbionts of mesquite from the Sonoran Desert: salt tolerance, facultative halophily and nitrate respiration. Soil Biol. Biochem. 35:1675-1682.



Kato, S., M. Jenkins, E. Fogarty, and D. Bowman. 2004. Cryptosporidium parvum oocyst inactivation in field soil and its relation to soil characteristics: analysis using the geographic information system. Sci. Total Environ. 321:47-58.



Krutz, L.J., S.A. Senseman, K.J. McInnes, D.A. Zuberer and D.P. Tierney. 2003. Adsorption and desorption of atrazine, desethylatrazine, deisopropylatrazine and hydroxyatrazine in vegetated filter strip and cultivated soil. J. Agric. Food Chem. 51:7379-7384.



Kuntz, R. L., P. G. Hartel, D. G. Godfrey, J. L. McDonald, K. W. Gates, and W. I. Segars. 2003. Targeted sampling protocol as prelude to bacterial source tracking with Enterococcus faecalis. J. Environ. Qual. 32:2311-2318.



Lalande, T. L., H. D. Skipper, D. C. Wolf, C. M. Reynolds, D. L. Freedman, B. W. Pinkerton, P. G. Hartel, and L. W. Grimes. 2003. Phytoremediation of pyrene in a Cecil soil under field conditions. Int. J. Phytoremed. 5:1-12.



Mesarch, M. B., C. H. Nakatsu, and L. Nies. 2004. Bench-scale and field-scale evaluation of catechol 2,3-dioxygenase specific primers for use in monitoring BTX bioremediation. Water Res. 38: 1281-1288.



Myoda, S. P., C. A. Carson, J. J. Fuhrmann, B.?K. Hahm, P. G. Hartel, L. A. Johnson, R. L. Kuntz, C. H. Nakatsu, M. J. Sadowsky, M. Samadpour, and H. Yampara?Iquise. 2003. Comparison of genotypic-based microbial source tracking methods requiring a host origin database. J. Water Health 1:167-180.



Park, J.-H., Y. Feng, P. Ji, T.C. Voice, and S.A. Boyd. 2003. Assessment of bioavailability of soil-sorbed atrazine. Appl. Environ. Microbiol. 69:3288-3298.



Ritter K. J., E. Carruthers, C. A. Carson, R. D. Ellender, V. J. Harwood, K. Kingsley, C. Nakatsu, M. Sadowsky, B. Shear, B. West, J. E. Whitlock, B. A. Wiggins, J. D. Wilbur. 2003. Assessment of statistical methods used in microbial source tracking methods. J. Wat. Health 1: 209-223.



Rumberger, A, Yao, S, Merwin, IA., Nelson, EB and Thies, JE. 2004. Rootstock genotype and orchard replant position rather than soil fumigation or compost amendment determine tree growth and rhizosphere bacterial community composition in an apple replant soil. Plant and Soil. In Press (Prepublication Date: 01/21/2004).



Sylvia, D.M., A.K. Alagely, M.E. Kane, N.L. Philman. 2003. Compatible host/mycorrhizal fungus combinations for micropropagated sea oats. I. Field sampling and greenhouse evaluations. Mycorrhiza 13:177-183.



Wu, G., Y. Feng, and S.A. Boyd. 2003. Characterization of bacteria capable of degrading soil-sorbed biphenyl. Bull. Environ. Contam. Toxicol. 71:768-775.



Accepted Full Length Articles (Refereed Journals)

Heinsch, F.A., J.L. Heilman, K.J. McInnes, D.R. Cobo, D.A. Zuberer and D.L. Roelke. 2003. Carbon dioxide exchange in a high marsh on the Texas Gulf Coast: effects of freshwater availability. Ag and Forest Meteor. In press.



Keller, S.L, M.B. Jenkins, and W.C. Ghiorse. 2003. Simulating the effect of liquid CO2 on Cryptosporidium parvum oocysts in aquifer material. J. Environ. Engin. Accepted, 7 Nov. 2003.



Rodgers, K., P. G. Hartel, R. L. Kuntz, and W. I. Segars. 2004. Presence of Enterococcus faecalis in human sewage, chicken litter, and wild birds. Water Res. (accepted).



Stark, J.A., D.D. Bowman, M. Labare, E.A. Fogarty, A. Lucio-Forster, J. Barbi, M.B. Jenkins, M. Pavlo, and M.A. Butkus. 2003. Do iodine water purification tablets provide an effective barrier against Cryptosporidium parvum? Military Medicine. Accepted, 27 Oct. 2003.



Submitted Full Length Articles (Refereed Journals)

Hartel PG, S. Myoda, R. L. Kuntz, K. Rodgers, J. Entry, S. Ver Wey, E. Schröder, J. Calle, M. Lacourt, J. E. Thies, J. P. Reilly, and J. J. Fuhrmann. 2004. Geographic and temporal changes of Enterococcus faecalis ribotypes for bacterial source tracking. Submitted to J. Environ. Qual.



Jones CM, and J. E. Thies. 2004. Laboratory evaluation of the entomopathogenic fungal species Metarhizium anisopliae and Beauvaria bassiana for use in controlling the alfalfa snout beetle, Otiorhynchus ligustici. Submitted to Biological Control.



Meyers, S.K., S.P. Deng, N.T. Basta, W.W. Clarkson, and G. Wilber. 200_. Acetonitrile extractable and water leachable 2,4,6-Trinitrotoluene (TNT), Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (RDX), and Octahydrol-1,3,5,7-Tetranitro-1,3,5,7-Tetrazocine (HMX) in soil and their impact on microbial community. (in review).



Stromberger, M.E. Metal vs fire: a soil microbiology laboratory incubation study demonstrating microbial biomass and activities in disturbed forest soils. Submitted to J. Nat. Res. Life Sci. Ed.



Vacca, D.J., M.C. Pellitteri, E. Padilla-Crespo, W.F. Bleam and W.J. Hickey. 2004. Isolation and molecular characterization of soil bacteria adapted to degrade humic acid-sorbed phenanthrene. Submitted to Appl. Environ. Microbiol.

Yao S, I. A. Merwin, G. Bird, G. S.Abawi, and J. E. Thies. 2004. Orchard groundcover management practices that maintain soil cover stimulate soil microbial activity and alter microbial community composition. Submitted to Plant and Soil.



In Print Abstracts:

Ackerman, C. E., F. M. Wanjau, J. D. Wilbur, S. M. Brouder, R. W. Doerge, and C.H. Nakatsu. 2003. The effects of long term tillage and rotational treatments on the rhizosphere microbial community structure of soybean. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Baldwin, B., L. Nies, C. Nakatsu, and J. Simonds. 2003. Molecular genetic detection and enumeration of aromatic oxygenase genes at gasoline-contaminated sites. Abstr. Battelle Bioremed. Conf., Orlando, FL.



Beasley, F. C., C. H. Nakatsu, N. Carmosini, A. Konopka. 2003. Genotypic and phenotypic characterization of Arthrobacter isolates from chromate contaminated soil. Annu. Meet. Abstr. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Carrero-Colon, M., C. Nakatsu, A. E. Konopka. 2003. Nutrient periodicity as a selective force in structuring microbial communities. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington D.C.



Devare, M, Londono, LM, Jones, CM and Thies, JE. 2003. Effects of rootworm-resistant transgenic corn and insecticide on soil microbial communities. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Entry, J. A., S. A. Ver Wey, P. G. Hartel, R. L. Kuntz, and K. Rodgers. 2003. Targeted sampling with Escherichia coli for bacterial source tracking in Idaho. Abstr. Annu. Meet. Am. Soc. Microbiol. p. 591.



Feng, Y., D.W. Reeves, and P. Ji. 2003. Effect of crop rotation and tillage systems on soil microbial communities. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Feng, Y, P. G. Hartel, S. Deng, K. Rodgers, J. Fisher, and B. Liu. 2004. Survival of Enterococcus species and subspecies in sediment for bacterial source tracking. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C.



Fisher, D.C., M.B. Jenkins, R.R. Lowrance, R.K. Hubbard, T.C., Strickland, G. Vellidis, and G.L. Newton. 2003. In vitro disappearances of E. coli and enterococci related to light, predation, and sedimentation. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Franzluebbers, A.J., M.B. Jenkins, D.A. Zuberer, N.S. Hill. 2003. Soil responses to tall fescue endophyte infection. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Hagedorn, C., A. H. Chapman, S. Herbein, M. Saluta, and P. McClellan. 2004. Microbial source tracking as a technology for identifying sources of fecal pollution in water. 4th National Conference on Science, Policy, and the Environment, National Council for Science and the Environment. Washington, D.C.



Hagedorn, C. 2004. Bridging the gap between science and policy: Environmental Detection News. 4th National Conference on Science, Policy, and the Envrionment, National Council for Science and the Environment. Washington, D.C.



Hahm, B.K., A. K.Bhunia, and C. H.Nakatsu. 2003. Application of AFLP for discriminating Escherichia coli isolated from livestock, wildlife and humans. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington D.C.



Hansom, J., M.-K. Lee, D.I. Doser, and Y. Feng. 2003. The hydrodynamics and related biogeochemical processes in the Permian Basin, western Texas. Geologic. Soc. Am. Annu. Meet. Abstr. 35(6):215.



Hartel, P. G. 2003. Combining targeted sampling and Enterococcus faecalis isolation for bacterial source tracking of human fecal contamination. Abstr. Annu. Meet. Soc. Environ. Toxicol. Chem. p. 135-136.



Hartel, P. G., S. Myoda, R. L. Kuntz, K. Rodgers, J. A. Entry, S. A. Ver Wey, E. C. Schröder, M. Lacourt, J. Calle, J. E. Thies, J. P. Reilly, and J. J. Fuhrmann. 2003. Geographic and temporal variability of Enterococcus faecalis ribotypes for bacterial source tracking. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C., p. 592.



Hartel, P. G., K. Rodgers, S. N. J. Hemmings, J. L. McDonald, K. Gates, S. H. Jones, T. L. Bryant, B. O?Hara, E. Otero, and Y. Rivera?Torres. 2004. Desiccation as a mechanism of fecal enterococcal survival and regrowth for bacterial source tracking. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C.



Hassall, A., and C. Hagedorn. 2004. Sources of fecal pollution in four mixed-use watersheds in Prince William County, Va. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington D.C.



Herbein, S., and C. Hagedorn. 2004. Fecal E. coli and Enterococcus isolated from two humans and three companion animals compared by pulsed-field gel electrophoresis. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington D.C.



Hickey, W.J., D.J. Vacca, M. Pellitterri and W.F. Bleam. 2003. Isolation and analysis of bacteria adapted to degrade humic-sorbed polynuclear aromatic hydrocarbons (PAH). Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Hristova, K. R., B. Inceoglu, C. Naktsu. K. M. Scow. 2003. Characterization of enzymes involved in MTBE biodegradation in strain PM1. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington D.C.



Hutchinson, J. L., K. S. McLean, Y. Feng, C. Burmester, and G. W. Lawrence. 2003. Accelerated breakdown of aldicarb in Alabama cotton field soils. Phytopath. 93:S38. Publication no. P-2003-0274-AMA.



Jenkins, M.B. and A.J. Franzluebbers. 2003. Soil microbial community structure under endophyte-free and indophyte-infected tall fescue as determined by FISH analysis. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Jerke, K., C. H. Nakatsu, and A. Konopka. 2003. A physiological and genetic approach to studying lead resistance in Arthrobacter sp. VN23-1. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C.



Jimenez-Esquilin, A.E., and M. E. Stromberger. 2003. Recovery of soil microorganisms following the Hayman wildfire. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Jimenez-Esquilin, A., and M. Stromberger. 2004. Structural characterization of the microbial community in a fire-affected forest soil. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C.



Kerns, J.P.K., D.M. Vietor, R.H. White T.L. Provin and D.A. Zuberer. 2003. Physical and biological properties of soil amended with composted dairy manure during turf establishment. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Kourtev, P. S., N. Carmosini, F. Beasley, C. Nakatsu, A. E. Konopka. 2003. Heavy metals modulate microbial community responses to inputs of organic carbon. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C.



Kuntz, R. L., P. G. Hartel, D. G. Godfrey, J. L. McDonald, K. W. Gates, and W. I. Segars. 2003. Targeted sampling protocol with Enterococcus faecalis for bacterial source tracking. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C., p. 573-574.



McKinney, J., and C. Hagedorn. 2004. Identifying sources of fecal pollution in the Appotomattox River Watershed. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington D.C.



Provin, T.L., R.H. White, D.A. Zuberer, J.C. Thomas and J.L. Pitt. 2003. Influence of compost amendments on sod establishment and soil physical, chemical and microbiological properties. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Reilly, JP, Thies, JE and Baeumner, A. 2003. Development of an optical strip-assay biosensor for Enterococcus faecalis. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, DC.



Rodgers, K., P. G. Hartel, R. L. Kuntz, and W. I. Segars. 2003. Presence of Enterococcus faecalis in human sewage, chicken litter, and wild birds. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C., p. 592.



Sangsupan, H.A., D.E. Radcliffe, M.B. Jenkins, P.G. Hartel, W.K. Vencill, and M.L. Cabrera. 2003. Transport characteristics of 17-beta estradiol and testosterone in no-till and conventionally tilled Georgia Piedmont soil. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Savin, M.C., S.E. Ziegler, G.J. Thoma, K.M. Greer , P.J. Tomlinson, and D.C. Wolf. 2003. Nematode population changes during phytoremediation of a crude oil-contaminated soil. p. 44. In 10th Annu. Internation. Petroleum Environ. Confer. Integrated Petroleum Environ. Consort., Tulsa, OK.



Schröder, E. C., C. I. Castro, P. G. Hartel, R. L. Kuntz, and K. Rodgers. 2003. Targeted sampling with Escherichia coli for bacterial source tracking in Puerto Rico. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, D.C., p. 592.



Sullivan, T.S, and M.E. Stromberger. 2003. Microbial community responses to biosolids in rangeland soils. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Tomlinson, P. J., K. R. Payne, K. R. Brye, and M. C. Savin. 2003. Microbial dynamics in long- term research plots receiving alum-treated and untreated poultry litter. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Wu, W, JE Thies, Q Ye, and H Min. 2003. Effect of Bt transgenic rice straw on the bacterial community diversity in a flooded soil. Annu. Meet. Abst. [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.



Wu, W, Q Ye, H Min, and JE Thies. 2003. Microbial enzyme activities and bacterial community composition in the rhizosphere of Bt-transgenic rice as compared to its non-transgenic cultivar. Abstr. Annu. Meet. Am. Soc. Microbiol., Washington, DC.



Zhang, L. and Y. Feng. 2003. Sorption and desorption of carbaryl by soils. Annu. Meet. Abst. Southern Branch ASA [CD-ROM], Madison, WI.

Zurdo-Piñeiro, J. L., Lorite, M. J., Brelles-Mariño, G, Schröder, E. C., Bedmar, E.J., Martinez-Molina, E., Mateos, P.F. and Velázquez, E. 2002. Identificación de rhizobia de crecimiento rápido que nodulan leguminosas en Puerto Rico. XXI Reunión Latinoamericana de Rhizobiología, Cocoyoc, México. p. 89.



Accepted Abstracts

Devare, M.H., L.M. Londono, and J. E. Thies. 2004. A comparative assessment of cry3Bb Bt corn and insecticide on microbial biomass, processes, and bacterial diversity in soil. ASA, Seattle, WA



Jones, C.M. and J.E. Thies. 2004. Microbial community analysis in biocontrol research: Creation of a regional sequence database and refinement of T-RFLP for use with fungal populations. International Society for Microbial Ecology Meeting, Cancun, Mexico.



Jones, C.M. and J.E. Thies. 2004. Soil bacterial and fungal community response to application of entomopathogenic fungi in the field. ASA, Seattle, WA

Kantety, R., L.M. Londono, M. B. McBride, and J. E. Thies. 2004. Changes in microbial community structure in long-term sludge amended soils and naturally metalliferous soils. ASA, Seattle, WA



Londoño, L.M., M. H. Devare, and J. E. Thies. 2004. Effects of Cry3Bb Bt corn and insecticide on diversity of fungi in soil. ASA, Seattle, WA



Rumberger, A, J. E. Thies, E. B. Nelson, and I. A. Merwin. 2004. Apple replant disease and bacterial rhizosphere community composition. ASA, Seattle, WA



Thies, JE, W. Wu, and M. H. Devare. 2004. Multi-year field trials validate transgenic Bt corn and Bt rice pose little risk to the osil microbial foodweb. International Society for Microbial Ecology Meeting, Cancun, Mexico.



M.S. Theses

McKinney, J. M. Identifying Sources of Fecal Pollution in the Appomattox River Watershed. M.S. Thesis, May, 2004.



Porter, K. R., Identifying Sources of Fecal Pollution in Washington D.C. Waterways. M.S. Thesis, December, 2003.



Non-Refereed Publications

Hartel, P. G., E. A. Frick, A. L. Funk, J. L. Hill, J. D. Summer, and M. B. Gregory. 2004. Sharing of ribotype patterns of Escherichia coli isolates during baseflow and stormflow conditions. U. S. Geological Survey, Scientific Investigations Report 2004?5004. 10 p.



Proceedings

Chellemi, D. O., D.J. Mitchell, M.E. Kannwischer-Mitchell, E. Rosskopf and J.Graham. 2003 Soilborne disease and root colonizing fungi in vegetable crop systems, p. 334 in Proc. 8th Intern. Cong. Plant Pathology, Christchurch, New Zealand.



Graham, J. H. M. S. Irey, J. B. Morton, L. Baucum, and D. Bright. 2003. Sugarcane yield decline and its association with early colonization rate by arbuscular mycorrhizal fungi (AMF). p. 265 in 4th Intern. Conf. on Mycorrhizas, Montreal, Canada.



Graham, J. H., S. Ravnskov, J. Larsen. 2004. Testing models for mycorrhiza Pythium interactions in tomato roots. p. 37 in Proc. Development of Biocontrol Agents of Diseases for Commercial Applications in Food Production Systems. Sevilla, Spain.



Hons, F.M., A.L. Wright, S.M. Kolodziej, V. A. Saladino, R.L. Lemon, M.L. McFarland and D.A. Zuberer. 2004. Rotation, tillage and nitrogen rate effects on cotton growth and yield. Proc. Of the 2004 Beltwide Cotton Conference, San Antonio, TX.



Kolodziej, S.M., F.M Hons, Alan Wright and D.A, Zuberer. 2004. The effects of tillage and rotation on labile organic carbon and aggregation in a cotton cropping system. Soil Management and Plant Nutrition. Proc. Beltwide Cotton Conference, San Antonio, TX.



Rodgers, K., P. G. Hartel, R. L. Kuntz, D. G. Godfrey, and W. I. Segars. 2003. Field-testing Enterococcus faecalis for bacterial source tracking. p. 837-841. In K. J. Hatcher (ed.) Proceedings of the 2003 Georgia Water Resources Conference, April 23-24, University of Georgia, Athens.



Presentations

Padilla-Crespo, E., D. Vacca and W. J. Hickey. 2003. Diversity of Burkholderia polycyclic aromatic hydrocarbons (PAH) degradation genes. NIEHS Superfund Sci. Mtg, Los Angeles, CA; 13-15 October 2003.



Reilly, J.P., and Thies, J.E. 2003. Preliminary findings from ribotyping of enterococci isolated from Wappinger and Stony Creek catchments. Invited talk at the Dutchess Environment Council meeting: Emerging Water Contaminants.



Sullivan, T., M. Stromberger, and R. Brobst. 2004. Microbial community responses to biosolids in rangeland soils. Sustainable Land Application Conference, Lake Buena Vista, FL, January 4-8.



Torres-Albelo, J.J. and Schröder, Eduardo C. 2003. Arboles Fijadores de Nitrógeno. Pithecellobium arboreum (Subfalia Mimosoidea). Grupo Caribeño de Rhizobium, March, 2003.



Book Chapters

Hartel, P.G. 2004. Environmental factors affecting microbial activity. In D. Hillel, C. Rosenzweig, D. S. Powlson, K. M. Scow, M. J. Singer, D. L. Sparks, and J. Hatfield (ed.). Encyclopedia of soils in the environment. Elsevier, London (accepted).



Hickey, W.J. 2004. Microbiology and biochemistry of xenobiotic compound degradation. In D.M. Sylvia et al. (eds.) Soil Microbiology: Environmental and Agricultural Perspectives, 2nd Ed. Oxford University Press, New York, NY. (In Press).



Keeling, W. G., C. Hagedorn, and B. A. Wiggins. Concepts and applications of bacterial source tracking in water quality. In T. Younos, (ed.). TMDL: Approaches and Challenges, PennWell Press. Expected date of publication is June 2004.



Stromberger, M.E. Fungal communities of agroecosystems. In J. Dighton et al. (ed.) The Fungal Community. Marcel Dekker, New York, NY (submitted).



Books

Sylvia, D. M., J. J. Fuhrmann, P. G. Hartel, and D. A. Zuberer (eds). 2004. Principles and applications of soil microbiology, 2nd edition. Prentice-Hall, Upper Saddle River, NJ. (accepted).

10/03/2005

PUBLICATIONS (* denotes collaboration between two or more S-297 members)

Books

*Edge, T., J. Griffith, J. Hansel, V. J. Harwood, M. Jenkins, A. Layton, M. Molina, C. Nakatsu, R. Oshiro, M. Sadowsky, J. Santo Domingo, O. Shanks, G. Stelma, J. Stewart, D. Stoeckel, B. Wiggins, and J. Wilbur. 2005. Microbial source tracking guide document. U. S. Environmental Protection Agency, Office of Research and Development, EPA/600-R-05-064.

*Sylvia, D. M., J. J. Fuhrmann, P. G. Hartel, and D. A. Zuberer. 2005. Principles and applications of soil microbiology, 2nd edition. Prentice-Hall, Upper Saddle River, NJ.

*Sylvia, D.M., P.G. Hartel, J.J. Fuhrmann, and D. Zuberer (ed.) 2005. Instructors manual: Principles and applications of soil microbiology, 2nd edition. Prentice Hall, Upper Saddle River, NJ.

Book Chapters

Chaney, R. L., Y.M. Li, J. S. Angle, A. J. M. Baker, R. D. Reeves, S. L. Brown, F. A. Homer, M. Malik, and M. Chin. 2000. Improving metal hyperaccumulator wild plants to develop commercial phytoextraction systems: Approaches and progress. p. 131- 160. In N. Terry and G.S. Banuelos (ed.) Phytoremediation of contaminated soil and water. CRC Press, Boca Raton, FL.

Chaney, R. L., J. A. Ryan, U. Kukier, S. L. Brown, G. Siebielec, M. Malik, and J. S. Angle. 2001. Heavy metal aspects of compost use. p. 323-360. In P. J. Stofella and B. A. Kahn (ed.) Compost utilization in horticultural cropping systems. CRC Press, Boca Raton, FL.

Entry, J. A., P. A. Rygiewicz, L. S. Watrud, and P. K. Donnelly. 2002. Response of arbuscular
mycorrhizae to adverse soil conditions. p. 135-158. In K. Sharma (ed.) Arbuscular mycorrhizae: Interactions in plants, rhizosphere and soils. Oxford Press, NY.

Feng, Y. 2004. Microbial and photolytic degradation of 3,5,6-trichloro-2-pyridinol. p. 15-24. In J. J. Gan et al. (ed.) Deactivation (neutralization or detoxification) and safe disposal of germicides and pesticides. American Chemical Society, Washington, DC.

*Fuhrmann, J. J. 2005. Microbial metabolism. p. 54-84. In D.M. Sylvia et al. (ed.) Principles and applications of soil microbiology. 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.

*Germida, J. J. 2005. Transformations of sulfur. p. 433-462. In D.M. Sylvia et al. (ed.) Principles and applications of soil microbiology. 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.

Graham, J. H. 2000. Assessing costs of arbuscular mycorrhizal symbiosis in agroecosystems. p. 127-140. In G. K. Podila and D. D. Douds, Jr. (ed.) Current advances in mycorrhizal research. APS Press, St. Paul, MN.

*Graham, J. H. 2005. Biological control of soilborne plant pathogens and nematodes. p. 562-586. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.

Graham, J. H., and R. M. Miller. 2005. Mycorrhizas: Gene to function. In H. Lambers and T. D. Colmer (ed.) Root ecophysiology: From gene to function. Kluwer Academic Publisher, Dordrecht, Netherlands (in press).

Hartel, P.G. 2004. Environmental factors affecting microbial activity. p. 448-455. In D. Hillel, C. Rosenzweig, D. S. Powlson, K. M. Scow, M. J. Singer, D. L. Sparks, and J. Hatfield (ed.). Encyclopedia of soils in the environment. Elsevier, London.

*Hartel, P. G. 2005. The soil habitat. p. 26-53. In D.M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.

Hickey, W. J. 2005. Microbiology and biochemistry of xenobiotic compound degradation. p. 510-535. In D.M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.

Jack, A. L., and J. E. Thies. 2005. Compost and vermicompost as amendments promoting soil health. In Uphoff et al. (ed.) Biological approaches to sustainable soil systems. CRC Press. (in press).

Jarstfer, A.G. and D.M. Sylvia. 2001. Isolation, culture and detection of arbuscular mycorrhizal fungi. p. 535-542. In C.J. Hurst et al. (ed.) Manual of environmental microbiology, 2nd ed. American Society of Microbiology, Washington, D.C.

Keeling, W. G., C. Hagedorn, B. A. Wiggins, and K. R. Porter. 2005. Bacterial source tracking: Concept and application to the TMDL. p. 207-246. In T. Younos (ed.) TMDL: Approaches and challenges. PennWell Books, Tulsa, OK.
*Morton, J. B. 2005. Fungi. p. 141-161. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.

Morton, J. B., R. E. Koske, S. L. Stuermer, and S. P. Bentivenga. 2004. Mutualistic arbuscular endomycorrhizal fungi. p. 317-336. In: G. M. Mueller, G. F. Bills, and M. S. Foster (ed.) Biodiversity of fungi: inventory and monitoring methods. Smithsonian Institution Press, Washington, DC.

*Mullen, M.D. 2005. Phosphorus and other elements. p.463-488. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. Pearson-Prentice Hall Publishers, Upper Saddle River, NJ.

*Nakatsu, C. H. 2005. Fundamentals of microbial genetics. p. 85-98. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.

Nakatsu, C. H. 2004. Microbial community analysis. p. 455-463. In: D. Hillel, C. Rosenzweig, D. Powlson, K. Scow, M. Singer and D. Sparks (ed.) Encyclopedia of soils in the environment. Elsevier, Oxford.

Nakatsu, C. H. and L. J. Forney. 2004. Parameters of nucleic acid hybridization experiments. In: G. A. Kowalchuk, F.J. de Bruijn, I. M. Head, A.D.L. Akkermans, and J.D. van Elsas (ed.) Molecular microbial ecology manual, 2nd ed. Springer Publishers, Netherlands.

*Reynolds, C. M., and H. D. Skipper. 2005. Bioremediation of contaminated soils. p. 536-561. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.

Schnabel, R. R., A. J. Franzluebbers, W. L. Stout, M. A. Sanderson, and J. A. Stuedemann. 2001. The effects of pasture management practices. p. 291-322. In R. F. Follett et al. (ed.) The potential of U. S. grazing lands to sequester carbon and mitigate the greenhouse effect. CRC Press, Boca Raton, FL.

Schröder, E. C. 2001. Importance of symbiotic nitrogen fixation in tropical forage legume
production. p. 251-268. In A. Sotomayor-Ríos and W. D. Pitman (ed.) Tropical forage plants: Development and use. CRC Press, Boca Raton. FL.

Sojka, R. E., D. L. Bjorneberg, and J. A. Entry. 2002. Irrigation, a historical perspective. p. 745-749. In R. Lal (ed). Encyclopedia of Soil Science. Marcel Dekker, New York.

Sojka, R. E., W. J. Orts, and J. A. Entry. 2004. Soil physics and hydrology: Conditioners. P. 301-306. In: D. Hillel, C. Rosenzweig, D. Powlson, K. Scow, M. Singer and D. Sparks (ed.) Encyclopedia of soils in the environment. Elsevier, Oxford.

Stromberger, M. E. 2005. Fungal communities of agroecosystems. p. 813-832. In J. Dighton et al. (ed.) The fungal community. CRC Press, Boca Raton, FL.

*Sylvia, D. M. 2005. Mycorrhizal symbioses. p. 263-282. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. Pearson-Prentice Hall Publishers, Upper Saddle River, NJ.

Thies, J. E., and J. M. Grossman. 2005. Soil ecology and the soil habitat. In Uphoff et al. (ed.) Biological approaches to sustainable soil systems. CRC Press, Boca Raton, FL (in press).

*Wolf, D. C., and G. H. Wagner. 2005. Carbon transformations and soil organic matter formation. p. 285-332. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology. 2nd ed. Pearson-Prentice Hall publishers, Upper Saddle River, NJ.

*Wollum, A. G., and D. A. Zuberer. 2005. Introduction and historical perspective. p. 3-25. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology. 2nd ed. Pearson-Prentice Hall publishers, Upper Saddle River, NJ.

*Zuberer, D. A. 2005. Biological dinitrogen fixation: Introduction and nonsymbiotic. p. 373-404. In D. M. Sylvia et al. (ed.) Principles and applications of soil microbiology, 2nd ed. PearsonPrentice Hall Publishers, Upper Saddle River, NJ.


Journal Articles
Alagely, A. K., D. M. Sylvia, and L. Ma. 2005. Mycorrhizae increase arsenic uptake by a hyperaccumulating fern. J. Environ. Qual. (in press).

Allen, L. H. Jr., S. L. Albrecht, W. Colón, S. A. Covell, J. T. Baker, D. Pan, and K. J. Boote. 2003. Methane emissions of rice increased by elevated carbon dioxide and temperature. J. Environ. Qual. 32:1978-1991.

Angle, J. S., R. L. Chaney, A. J. M. Baker, Y.-M. Li, R. Reeves, V. Volk, R. Roseberg, E. Brewer, S. Burke, and J. P. Nelkin. 2001. Developing commercial phytoextraction technologies: Practical considerations. S. Afr. J. Sci. 97:619-623.

Augé, R. M., J. L. Moore, K. Cho, J. C. Stutz, D. M. Sylvia, A. K. Al-Agely, and A. M. Saxton. 2003. Relating drought resistance of Phaseolus vulgaris to soil and root colonization by mycorrhizal hyphae. J. Plant Physiol. 160:1147-1156.

Augé, R. M., J. L. Moore, D. M. Sylvia, and K. Cho. 2004. Mycorrhizal promotion of host stomatal conductance in relation to irradiance and temperature. Mycorrhiza 14:85-92.

Baldwin, B., C. H. Nakatsu, and L. Nies. 2003. Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl. Environ. Microbiol. 69:3350-3358.
Bever, J. D., P. A. Schultz, A. Pringle, and J. B. Morton. 2001. Arbuscular mycorrhizal fungi: More diverse than meets the eye and the ecological tale of why. BioScience 51:923-931.

Bigelow, C. A., D. C. Bowman, and A. G. Wollum. 2002. Characterization of soil microbial population dynamics in newly constructed sand-based rootzones. Crop Sci. 42:1611-1614.

Booth, A. M., A. K. Graves, C. Hagedorn, S. C. Hagedorn, and K. H. Mentz. 2003. Sources of fecal pollution in Virginias Blackwater River. J. Environ. Eng. 129:547-552.

Bray, S. R., K. Kitajima, and D. M. Sylvia. 2003. Mycorrhizae differentially alter growth, physiology, and competitive ability of an invasive shrub. Functional Ecol. 13:565-574.

Bressan, W., C. H. S. de Carvalho, and D. M. Sylvia. 2000. Inoculation of somatic embryos of sweet potato with an arbuscular mycorrhizal fungus improves embryo survival and plantlet formation. Can. J. Microbiol. 46:741-743.

Burke, S., J. S. Angle, R. L. Chaney, and S. Cunningham. 2000. Arbuscular Mycorrhizae effects on heavy metal uptake by corn. Int. J. Phytoremed. 2:23-29.

Chang, Y-J., A. K. M. Anwar Hussain, J. R. Stephens, M. D. Mullen, D. C. White, and A.D. Peacock. 2001. Impact of herbicides on the abundance and structure of indigenous subgroup ammonia oxidizer communities in soil microcosms. Environ. Toxicol. Chem. 20:2462-2468.

Coffin, R. B., P. H. Miyares, C. A. Kelly, L. A. Cifuentes, and C. M. Reynolds. 2001. 13C and 15N isotope analysis of TNT: Two dimensional source identification. Environ. Tox. Chem. 20:2676-2680.

Curtis, P., C. H. Nakatsu, and A. Konopka. 2002. Aciduric proteobacteria isolated from pH 2.9 soil. Arch. Microbiol. 178:65-70.

Darnault, C. J. G., P. Garnier, Y.-J. Kim, K. Oveson, T. S. Steenhuis, J. Y. Parlange, M. B. Jenkins, W. C. Ghiorse, and P. C. Baveye. 2003. Transport of Cryptosporidium parvum oocysts in the subsurface environment. Water Environ. Res. 75:113-120.

Darnault, C. J. G., T. S. Steenhuis, P. Garnier, Y.-J. Kim, M. B. Jenkins, W. C. Ghiorse, P. C. Baveye, and J.-Y. Parlange. 2004. Preferential flow and transport of Cryptosporidium parvum oocysts through the vadose zone: Experiments and modeling. Vadose Zone J. 3:262-270.

Davis, K. C., C. H. Nakatsu, R. Turco, S. Weagant, and A. K. Bhunia. 2003. Analysis of environmental Escherichia coli isolates for virulence genes using the TaqMan PCR system. J. Appl. Microbiol. 95:612-620.
Delorme, T., J. S. Angle, F. Coale, and R. Chaney. 2001. Phosphorus accumulation by select plant species. Inter. J. Phytoremed. 2:125-131.

Devare, M., C. M. Jones, and J. E. Thies. 2004. Effects of CRW transgenic corn and tefluthrin on the soil microbial community: Biomass, activity, and diversity. J. Environ Qual. 33:837-843.

Elliott, M. L., E. A. Guertal, E. A. Des Jardin, and H. D. Skipper. 2003. Effect of nitrogen rate and root-zone mix on rhizosphere bacterial populations and root mass in creeping bentgrass putting greens. Biol. Fertil. Soils 37:348-354.

Elliott, M. L., E. A. Guertal, and H. D. Skipper. 2004. Rhizosphere bacterial population flux in golf course putting greens in the southeastern United States. HortScience 39:1754-1758.

Entry, J. A., and N. Farmer. 2001. Movement of coliform bacteria and nutrients in groundwater flowing through basalt and sand aquifers. J. Environ. Qual. 30:1533-1539.

*Entry, J. A., J. J. Fuhrmann, R. E. Sojka, and G. E. Shewmaker. 2004. Influence of irrigated agriculture on soil carbon and microbial community structure. Environ. Manage. 33:S363-S373.

*Entry, J. A., R. K. Hubbard, J. E. Thies, and J. J. Fuhrmann. 2000. The influence of vegetation in riparian filterstrips on coliform bacteria. I. Movement and survival in water. J. Environ. Qual. 29:1206-1214.

*Entry, J. A., R. K. Hubbard, J. E. Thies, and J. J. Fuhrmann. 2000. The influence of vegetation in riparian filterstrips on coliform bacteria. II. Survival in soils. J. Environ. Qual. 29:1215-1224.

*Entry, J. A., I. Phillips, H. Stratton, and R. E. Sojka. 2001. Efficacy of polyacrylamide+Al(SO4)3 and polyacrylamide+CaO to filter microorganisms and nutrients from animal wastewater. Environ. Pollut. 121:453-462.

Entry, J. A., P. A. Rygiewicz, L. S. Watrud, and, P. K. Donnelly. 2001. The influence of adverse soil conditions on formation and function of arbuscular mycorrhizae. Adv. Environ. Res. 7:123-138.

Entry, J. A. and R. E. Sojka. 2003. The efficacy of polyacrylamide to reduce nutrient movement from an irrigated field. Trans. ASAE. 46:75-83.

Entry, J. A., R. E. Sojka, and G. Shewmaker. 2003. Management of irrigated agriculture to increase carbon storage in soils. Environ. Management 33:S309-S317.

Entry, J. A., R. E. Sojka, M. E. Watwood, and C. Ross. 2002. Environmental and agricultural applications of polyacrylamide preparations. Environ. Pollut. 120:191-200.

Entry, J. A., C. A. Strausbaugh, and R. E. Sojka. 2001. Wood chip - polyacrylamide cores as a carrier for biocontrol bacteria suppresses Verticllium wilt on potato. Biocontrol Sci. Technol. 10:677-686.

Fang, C., M. Radosevich, and J. J. Fuhrmann. 2001. Characterization of rhizosphere microbial community structure in five similar grass species using FAME and BIOLOG Analyses. Soil Biol. Biochem. 33:679-682.

Fang, C., M. Radosevich, and J. J. Fuhrmann. 2001. Atrazine and phenanthrene degradation in grass rhizosphere soil. Soil Biol. Biochem. 33:671-678.

Feng, Y., A. C. Motta, D. W. Reeves, C. H. Burmester, E. van Santen, and J. A. Osborne. 2003. Soil microbial communities under conventional-till and no-till continuous cotton systems. Soil Biol. Biochem. 35:1693-1703.

Feng, Y., D. M. Stoeckel, E. van Santen, and R. H. Walker. 2002. Effects of subsurface aeration and Trinexapac-ethyl application on soil microbial communities in a creeping bentgrass putting green. Biol. Fertil. Soils. 36:456-460.

*Franke-Snyder, M., D. D. Douds, L. Galvez, J. G. Phillips, P. Wagoner, L. Drinkwater, and J. B. Morton. 2001. Diversity of communities of arbuscular mycorrhizal (AM) fungi present in conventional versus low-input agricultural sites in eastern Pennsylvania, USA. Appl. Soil
Ecol. 16:35-48.

Franzluebbers, A. J., and N. S. Hill. 2005. Soil carbon, nitrogen, and ergot alkaloids with short- and long-term exposure to endophyte-free and -infected tall fescue. Soil Sci. Soc. Am. J. 69:404-412.

Franzluebbers, A. J., and J. A. Stuedemann. 2005. Soil carbon and nitrogen pools in response to tall fescue endophyte infection, fertilization, and cultivar. Soil Sci. Soc. Am. J. 69:396-403.

Fuentes, J. P., D. F. Bezdicek, M. Flury, S. L. Albrecht, and J. L. Smith. 2005. Microbial activity affected by lime in a long term no-till soil. Soil Tillage Res. (in press).

*Gagliardi, J. V., J. S. Angle, J. J. Germida, R. C. Wyndham, C. P. Chanway, R. J. Watson, C. Greer, T. McIntyre, H. H. Yu, M. A. Levin, E. Russek-Choen, S. Rosolen, J. Nairn, A. Seib, T. Martin-Heller, and G. Wisse. 2001. Intact soil-core microcosms for pre-release testing of introduced microbes: Comparison with multi-site field releases in diverse soils and climates. Can. J. Microbiol. 47:237-252

Gagliardi, J. V., J. S. Buyer, J. S. Angle, and E. Russek-Cohen. 2001. Structural and functional analysis of whole-soil microbial communities for risk and efficacy testing following microbial inoculation of wheat roots in diverse soils. Soil Biol. Biochem. 33:25-40.

*Gentry, T. J., D. C. Wolf, C.M. Reynolds, and J.J. Fuhrmann. 2003. Pyrene and phenanthrene influence on soil microbial populations. Bioremediation J. 7:53-68.

Gollany, H. T., R. R. Allmaras, S. L. Albrecht, S. M. Copeland, and C. L. Douglas, Jr. 2005. Incorporated source carbon and nitrogen fertilizer influence on sequestered carbon and soluble silica in a Pacific Northwest Mollisol. Soil Sci. Soc. Am. J. (in press).

Graham, J. H. 2001. What do root pathogens see in mycorrhizas? New Phytol. 148:357-359.

Graham, J. H., and R. M. Miller. 2005. Mycorrhizas: Gene to function. Plant Soil 274:79-100.

Graves, A. K., C. Hagedorn, A. Teetor, M. Mahal, A. M. Booth, and R. B. Reneau, Jr. 2002. Antibiotic resistance profiles to determine sources of fecal contamination in a rural Virginia watershed. J. Environ. Qual. 31:1300-1308.

Hagedorn, C., J. B. Crozier, K. Mentz, A. M. Booth, A. K. Graves, N. J. Nelson, and R. B. Reneau, Jr. 2003. Carbon source utilization profiles as a method to identify sources of fecal pollution in water. J. Appl. Microbiol. 94:792-799.

Hahm, B. K., Y. Maldonado, E. Schreiber, A. K. Bhunia, and C. H. Nakatsu. 2003. Subtyping of clinical and environmental isolates of Escherichia coli by multiplex PCR, AFLP, rep-PCR, PFGE and ribotyping. J. Microbiol. Methods 53:387-399.

*Haney, R. L., A. J. Franzluebbers, F. M. Hons, and D. A. Zuberer. 2001. Molar concentration of K2SO4 and soil pH affect estimation of extractable C with chloroform fumigation-extraction. Soil Biol. Biochem. 33:1501-1507.

Haney, R. L., S. A. Senseman, F. M. Hons, and D. A. Zuberer. 2000. Effect of glyphosate on soil microbial activity and biomass. Weed Sci. 48:8993.

Hartel, P.G., K. Gates, K. Payne, J. McDonald, K. Rodgers, S. Hemmings, J. Fisher, and L. Gentit. 2005. Targeted sampling to determine sources of fecal contamination. Stormwater 6:46-53.

Hartel, P. G., E. A. Frick, A. L. Funk, J. L. Hill, J. D. Summer, and M. B. Gregory. 2004. Sharing of ribotype patterns of Escherichia coli isolates during baseflow and stormflow conditions. U. S. Geological Survey, Scientific Investigations Report 20045004. 10 p.

Hartel, P. G., W. I. Segars, J. D. Summer, J. V. Collins, A. T. Phillips, and E. Whittle. 2000. Survival of fecal coliforms in fresh and stacked broiler litter. J. Appl. Poultry Res. 9:505-512.

Hartel, P. G., J. D. Summer, J. L. Hill, J. V. Collins, J. A. Entry, and W. I. Segars. 2002. Geographic variability of Escherichia coli ribotypes from animals in Idaho and Georgia. J. Environ. Qual. 31:1273-1278.

Hartel, P. G., J. D. Summer, and W. I. Segars. 2003. Deer diet affects ribotype diversity of Escherichia coli for bacterial source tracking. Water Res. 37:3263-3268.

Harwood, V. J., B. Wiggins, C. Hagedorn, R. D. Ellender, J. Gooch, J. Kern, M. Samadpour, A. H. Chapman, and B. J. Robinson. 2003. Phenotypic library-based microbial source tracking methods: Efficacy in the California collaborative study. J. Water Health. 1:153-156.

Healy, F. G., C. Latorre, S. L. Albrecht, P. M. Reddy, and K. T. Shanmugam. 2003. Altered kinetic properties of tyrosine-183 to cysteine mutation in glutamine synthetase of Anabaena variabilis strain SA1 is responsible for excretion of ammonium ion produced by nitrogenase. Curr. Microbiol. 46:423431.

Honeycutt, C. W., T. S. Griffin, B. J. Wienhold, B. Eghball, S. L. Albrecht, J. M. Powell, B. L. Woodbury, K. R. Sistani, R. K. Hubbard, H. A. Torbert III, R. A. Eigenberg, R. J. Wright, M. D. Jawson, and Z. He. 2005. Protocols for nationally coordinated laboratory and field research on manure nitrogen mineralization. Commun. Soil Sci. Plant Anal. (in press).

Janecka, J., M. B. Jenkins, N. S. Brackett, L. W. Lion, and W. C. Ghiorse. 2002. Characterization of a Sinorhizobium isolate and its extracellular polymer implicated in pollutant transport in soil. Appl. Environ. Microbiol. 68:423-426.

Jenkins, M. B. 2003. Rhizobial and bradyrhizobial symbionts of mesquite from the Sonoran Desert: Salt tolerance, facultative halophily and nitrate respiration. Soil Biol. Biochem. 35:1675-1682.

Jenkins, M. B., D. D. Bowman, E. A. Fogarty, and W. C. Ghiorse. 2002. Cryptosporidium parvum oocyst inactivation in three soil types at various temperatures and water potentials. Soil Biol. Biochem. 34:1101-1109.

Jenkins, M. B., D. M. Endale, H. H. Schomberg, and R.R. Sharpe. 2005. Fecal bacteria and sex hormones in soil and runoff from cropped watersheds amended with poultry litter. Sci. Total Environ. (accepted).

Jenkins, M. B., P. G. Hartel, T. J. Olexa, and J. A. Stuedemann. 2003. Putative temporal variability of Escherichia coli ribotypes from yearling steers. J. Environ. Qual. 32:305-309.

Jifon, J. L., J. H. Graham, D. L. Drouillard, and J. P. Syvertsen. 2002. Growth depression of mycorrhizal citrus seedlings grown at high phosphorus supply is mitigated by elevated CO2. New Phytol. 153:133-142.

Kato, S., M. B. Jenkins, E. Fogarty, and D. Bowman. 2004. Cryptosporidium parvum oocyst inactivation in field soil and its relation to soil characteristics: Analysis using the geographic information system. Sci. Total Environ. 321:47-58.

Kato, S., M. B. Jenkins, W. C. Ghiorse, and D. D. Bowman. 2002. Effects of freeze-thaw cycles on the viability of Cryptosporidium parvum oocysts in soil. J. Parasitol. 88:718-722.

Keller, S. L., M. B. Jenkins, and W. C. Ghiorse. 2003. Simulating the effect of liquid CO2 on Cryptosporidium parvum oocysts in aquifer material. J. Environ. Eng. 130:1547-1551.

Kelly, C. N., J. B. Morton, and J. R. Cumming. 2005. Variation in aluminum resistance among arbuscular mycorrhizal fungi. Mycorrhiza 15:193-201.

Konopka, A., T. Zakharova, and C. H. Nakatsu. 2002. Effect of starvation length upon microbial activity in a biomass recycle reactor. J. Indust. Microbiol. Biotech. 29:286-291.

*Krutz, L. J., C. A. Beyrouty, T. J. Gentry, D. C. Wolf, and C. M. Reynolds. 2005. Selective enrichment of a pyrene degrader population and enhanced pyrene degradation in bermudagrass rhizosphere. Biol. Fertil. Soils 41:359-364.

Krutz, L. J., S. A. Senseman, K. J. McInnes, D. A. Zuberer, and D. P. Tierney. 2003. Adsorption and desorption of atrazine, desethylatrazine, deisopropylatrazine and hydroxyatrazine in vegetated filter strip and cultivated soil. J. Agric. Food Chem. 51:7379-7384.

Kubikova E., J. L. Moore, B. H. Ownley, M. D. Mullen, and R. M. Augé. 2001. Mycorrhizal impact on osmotic adjustment in Ocimum basilicum during a lethal drying episode. J. Plant Physiol. 158:1227-1230.

Kuntz, R. L., P. G. Hartel, D. G. Godfrey, J. L. McDonald, K. W. Gates, and W. I. Segars. 2003. Targeted sampling protocol as prelude to bacterial source tracking with Enterococcus faecalis. J. Environ. Qual. 32:2311-2318.

Kuntz, R. L., P. G. Hartel, K. Rodgers, and W. I. Segars. 2004. Presence of Enterococcus faecalis in broiler litter and wild bird feces for bacterial source tracking. Water Res. 38:3551-3557.

*Lalande, T. L., H. D. Skipper, D. C. Wolf, C. M. Reynolds, D. L. Freedman, B. W. Pinkerton, P. G. Hartel, and L. W. Grimes. 2003. Phytoremediation of pyrene in a Cecil soil under field conditions. Int. J. Phytoremed. 5:1-12.

Lanfranco, L., V. Bianciotto, E. Lumini, M. Souza, J. Morton, and P. Bonfante. 2001. A combined morphological and molecular approach to characterize mycorrhizal fungal isolates in Gigasporaceae. New Phytol. 152:169-179.

LaPara, T. M., C. H. Nakatsu, L. M. Pantea, and J. E. Alleman. 2001. Aerobic biological treatment of pharmaceutical wastewater: Effect of temperature on COD removal and bacterial community development. Water Res. 35:4417-4425.

LaPara, T. M., T. Zakharova, C. H. Nakatsu, and A. Konopka. 2002. Functional and structural adaptations of bacterial communities growing on particulate substrates under stringent nutrient limitation. Microbiol. Ecol. 44:317-326.
Lawrence, K. S., Y. Feng, G. W. Lawrence, C. H. Burmester, and S. H. Norwood. 2005. Accelerated degradation of aldicarb and its metabolites in cotton field soils. J. Nematol. (in press).

Lee, T. H., S. Kurata, C. H. Nakatsu, and Y. Kamagata. 2005. Molecular analysis of bacterial community based on 16S rDNA and functional genes in activated sludge enriched with 2,4-dichlorophenolxyacetic acid (2,4-D) under different cultural conditions. Microbiol. Ecol. 48:151-162.

Li, Q.C., H. L. Allen , and A. G. Wollum. 2004. Microbial biomass and bacterial functional diversity in forest soils: Effects of organic matter removal, compaction, and vegetation control. Soil Biol. Biochem. 36:571-579.

Lovelock, C. E., K. Andersen, and J. B. Morton. 2003. Arbuscular mycorrhizal communities in tropical forests are affected by host tree species and environment. Oecologia 135:268-279.

Maldonado, Y., J.C. Fiser, C.H. Nakatsu, and A.K. Bhunia. 2005. Cytotoxicity potential of Escherichia coli isolates from environmental and food sources. Appl. Environ. Microbiol. 71:1890-1898.

Maldonado, J.D., F.H. Tainter, H.D. Skipper, and T.E. Lacher. 2001. Arbuscular mycorrhiza inoculum potential in natural and managed tropical montane soils in Costa Rica. Trop. Agric. (Trinidad). 77:27-32.

Malik, M., R. L. Chaney, E. P. Brewer, and J. S. Angle. 2001. Phytoextraction of soil cobalt using hyperaccumulator plants. Inter. J. Phytoremed. 2:319-330.

McCulley, R. L., T. W. Boutton, S. R. Archer, F. M. Hons, and D. A. Zuberer. 2004. Increases in soil respiration and nutrient cycling following woody plant establishment in grassland. Ecology 85:2804-2817.

Mesarch, M. B., C. H. Nakatsu, and L. Nies. 2004. Bench-scale and field-scale evaluation of catechol 2,3-dioxygenase specific primers for use in monitoring BTX bioremediation. Water Res. 38:1281-1288.

Morgan, C. A., A. Hudson, A. Konopka, and C. H. Nakatsu. 2002. Analyses of microbial activity in biomass recycle reactors using denaturing gradient gel electrophoresis of 16S rDNA and 16S rRNA PCR products. Can. J. Microbiol. 48:333341.

Morton, J. B., and D. Redecker. 2001. Two new families of Glomales, Archaeosporaceae and
Paraglomaceae, with two new genera Archaeospora and Paraglomus, based on concordant
molecular and morphological characters. Mycologia 93:181-195.

*Myoda S. P., C. A. Carson, J. J. Fuhrmann, B.-K. Hahm, P. G. Hartel, R. L. Kuntz, C. H. Nakatsu, M. J. Sadowsky, M. Samadpour, and H. Yampara-Iquise. 2003. Comparing genotypic bacterial source tracking methods that require a host origin database. J. Water Health 1:167-180.
Nakatsu, C. H. K. Hristova, S. Hanada, X.-Y. Meng, J. R. Hanson, K. M. Scow, and Y. Kamagata. 2005. Methylibium petroleiphilum gen. nov., sp. nov., a new methyl tert-butyl ether (MTBE)-degrading methylotroph of the beta-Proteobacteria. Int. J. Syst. Evol. Microbiol.
(in press).

*Nazih, N., O. Finlay Moore, P. G. Hartel, and J. J. Fuhrmann. 2001. Whole soil fatty acid methyl ester profiles of early soybean rhizosphere as affected by temperature and water potential. Soil Biol. Biochem. 33:693-696.

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Parham, J. A., S. P. Deng, W. R. Raun, and G. V. Johnson. 2002. Long-term cattle manure application in soil: I. Effect on soil phosphorus levels and activities of enzymes involved in phosphorus transformations in soil. Biol. Fertil. Soils 35:328-337.

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Wagner, S. C., H. D. Skipper, F. Walley, and W. B. Bridges, Jr. 2001. Long-term survival of Glomus claroideum propagules from soil pot cultures under simulated conditions. Mycologia 93:815-820.

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