08/11/2009

Al-Turki, S., M. Shahba, P. Forsline, and C. Stushnoff. 2008. Biodiversity of total phenolics, antioxidant capacity, and juice quality in apple cider taxa. Horticulture Environment and Biotechnology 49:409-417.

Baldo, A.M., L.D. Robertson, S.M. Sheffer, W.F. Lamboy, and J.A. Labate. 2008. Genetic diversity in tomato: SNPs from various sources show similar amounts of polymorphism and bottlenecking due to domestication. p. 6. In Final Abstracts Guide, Plant and Animal Genome XVI, San Diego, CA.

Baldo, A.M, Malnoy, M., Aldwinckle, H.S. 2008. A Search For Novel Apple Resistance Genes Among Wild And Rootstock Accessions. p. 233. In Final Abstracts Guide, Plant and Animal Genome XVI, San Diego, CA.

Baldo, A.M, Volk, G.M., Olmstead, J., Iezzoni, A. 2008. Resistance Gene Analogs In Cherries (Prunus spp.). p. 236. In Final Abstracts Guide, Plant and Animal Genome XVI, San Diego, CA.

Baldo, AM, J.L. Norelli, R.E. Farrell Jr., C.L. Bassett, H.S. Aldwinckle, M. Malnoy . 2009. Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora. Submitted to BMC Plant Biology

Baldo, A.M., Y. Wan, K. Gasic, S. Korban, G. Fazio. 2009. Mapping Genes Expressed Preferentially In Apple Rootstock. Plant & Animal Genome XVII Conference, San Diego, CA.

Baldo, A.M., G.M. Volk, A.D. Henk, A. Iezzoni, J.W. Olmstead, H.S. Aldwinckle, C.A. Weber, S. Samuelian, M.A. Malnoy. 2009. Resistance Gene Analogs In Six Genera Of Rosaceae: A Family-Wide Classification. Plant & Animal Genome XVII Conference, San Diego, CA.

Baldo, A.M., K.M. Folta. 2009. The US Rosaceae White Paper In A Wiki. Plant & Animal Genome XVII Conference, San Diego, CA.

Bassil, N.V., K.E. Hummer, J.D. Postman, G. Fazio, A.M. Baldo, I. Armas, and R. Williams. 2008. Nomenclature and genetic relationships of apples and pears from Terceira Island. Genet. Res. and Crop Evol. online doi: 10.1007/s10722-008-9369-z

Bassil, N.V., K.E. Hummer, J.D. Postman, A.M. Baldo, G. Fazio, I. Armas, R. Williams. 2009. Microsatellite Markers Reveal Relationships Within Heritage Apple And Pear Cultivars In Terceira Island. Plant & Animal Genome XVII Conference, San Diego, CA.

Bassett, C.L., Wisniewski, M.E., Baldo, A.M., Artlip, T.S., Farrell, R.E. 2008. Differential Expression Of Genes In Apple During Gradual Water Deficit Conditions. p. 136. In Final Abstracts Guide, Plant and Animal Genome XVI, San Diego, CA.

Borejsza-Wysocka, E.E., Norelli, J.L., Baldo, A.M., Farrell, R.E., Bassett, C.L., Aldwinckle, H.S. 2008. High-Efficiency Generation Of RNAi Mutants Of Apple By Use Of Multi-Vector Transformation. p. 232. In Final Abstracts Guide, Plant and Animal Genome XVI, San Diego, CA.

Borejsza-Wysocka, E.E., J.L. Norelli, A.M. Baldo, R.E. Farrell Jr, M. Malnoy, C.L. Bassett , H.S. Aldwinckle.2008. Making RNAi mutants of apple with high-efficiency by use of multi-vector transformation. p 62 in Final Abstracts Guide, 4th International Rosaceae Genomics Conference, Pucon, Chile
Fazio, G., P.L. Forsline, H. Aldwinckle, and L. Pons. 2008. The Apple Collection in Geneva, NY: A Resource for The Apple Industry Today and for Generations to Come. New York Fruit Quarterly 3:3-6. 16: 5-8.

Fazio, G., H.S. Aldwinckle, G.M. Volk, C.M. Richards, W. J. Janisiewicz, and P.L. Forsline. 2009. Progress in evaluating Malus sieversii for disease resistance and horticultural traits. Acta Horticulturae 814:59-66.

Forsline, P.L., J. Luby, and H.S. Aldwinckle. 2008. Fire blight incidence on Malus sieversii grown in New York and Minnesota. 11th International Workshop on Fire Blight. Acta Horticulturae 793: 345-350.

Janisiewicz, W., Robert Saftner , William Conway and Philip Forsline. 2008. Preliminary Evaluation of Apple Germplasm from Kazakhstan for Resistance to Blue Mold Decay Caused by Penicillium expansum After Harvest. HortScience 43:420-426.

Jurick II, W.M., R.A. Saftner, W.J. Janisiewicz, I. Vico, P.L. Forsline, W.S. Conway. 2009. Evaluation of wild apple (Malus sieversii) germplasm from Kazakhstan for resistance to Penicillium expansum and Colletotrichum acuatum. 2009 APS annual meeting

Kopsell, D.A., C.E. Sams, D.E. Deyton, K.R. Abney, D.E. Kopsell, and L. Robertson. 2009. Characterization of Nutritionally Important Carotenoids in Bunching Onion Accessions. HortSci (In Press).

Labate, J.A. 2008. Ch. 2 Molecular markers in germplasm conservation. p. 45-74. In C. Kole and A. Abbott, (ed.) Principles and practices of plant genomics vol 2. Science Publishers, Inc., Enfield, New Hampshire, USA; Plymouth, UK.

Labate, J.A., S.M. Sheffer, W.F. Lamboy, and A.M. Baldo. 2008. Genomic sequences of tomato (Solanum lycopersicum) for comparison of three marker types. Direct submission to GenBank. Accessions EU797528 to EU797577.

Labate, J.A. and Baldo, A.M. Single Nucleotide Polymorphisms (SNPs) and Insertion/Deletion polymorphisms (Indels) in four cultivated tomato lines. 2008. Submitted to dbSNP. NCBI ss# 76883011 to 76883086, 77106585 to 77106606.
Labate, J.A. and Baldo, A.M. 2008. Anonymous genomic sequence of tomato. NCBI accessions EU365695 to EU365773.

Labate, J.A., L.D. Robertson, and A.M. Baldo. 2009. Multilocus sequence data reveal extensive departures from equilibrium in domesticated tomato (Solanum lycopersicum L.). Heredity advance online publication doi:10.1038/hdy.2009.58.
Labate, J.A., L.D. Robertson, F. Wu, S.D. Tanksley, and A.M. Baldo. 2009. EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (S. lycopersicum L.). Theor Appl Genet 118:10051014.

Labate, J.A., L.D. Robertson, and A.M. Baldo. 2009. SNP diversity in cultivated tomato. In Final Program, 2009 Tomato Breeders Roundtable, Sacramento, CA.

Malnoy, M., A.M. Baldo, C. Carlisle, D. Bowatte, E.E. Borejsza-Wysocka, J.L. Norelli, R.E. Farrell Jr, C.L. Bassett, S. Gardiner, H.S. Aldwinckle. 2008. Mapping of apple genes found to be expressed during the Erwinia amylovora:Malus interaction. p 85 in Final Abstracts Guide, 4th International Rosaceae Genomics Conference, Pucon, Chile

Malnoy, M., A.M. Baldo, and H.S. Aldwinckle. 2008. Identification of new resistance gene analogs in 33 wild Malus species. p 57 in Final Abstracts Guide, 4th International Rosaceae Genomics Conference, Pucon, Chile

Malnoy, M., Baldo, A.M., Carlisle, C.M., Bowatte, D., Borejsza-Wysocka, E.E., Norelli, J.L., Farrell, R.E., Bassett, C.L., Gardiner, S.E., Aldwinckle, H.S. 2008. Identification And Mapping Of Genes Differentially Expressed During Interaction Of Resistant And Susceptible Apple Cultivars (Malus Xdomestica) With Erwinia amylovora. p. 232. In Final Abstracts Guide, Plant and Animal Genome XVI, San Diego, CA.

Myers, C. T., and P. L. Forsline. 2008. Pest resistance status of hybrid releases housed in USDA's "core" Malus germplasm collection. Entomological Society of America, Eastern Branch. Annual Meeting, 9-11 March, 2008, Syracuse, NY.

Myers, C.T., W.H. Reissig, and P.L. Forsline. 2008. Susceptibility of fruit from diverse apple and crabapple germplasm to attack from apple maggot, Rhagoletis pomonella (Walsh) (Diptera: Tephritidae). Journal of Economic Entomology. J. Econ. Entomol. 101(1): 206-215.

Norelli, J.L., Gardiner, S.E., Malnoy, M., Aldwinckle, H.S., Baldo, A.M., Borejsza-Wysocka, E.E., Farrell, R.E., Lalli, D.A., Celton, J.M., Bassett, C.L., Korban, S.S., Wisniewski, M.E. 2008. Using Functional Genomics To Develop Tools To Breed Fire Blight Resistant Apples. p. 232. In Final Abstracts Guide, Plant and Animal Genome XVI, San Diego, CA.

Richards, C.M., G.M. Volk, P.A. Reeves, A.A. Reilley, A.D. Henk, and P.L. Forsline, and H.S. Aldwinckle. 2009. Selection of stratified core sets representing wild apple (Malus sieversii). J. Amer. Soc. Hort. Sci. 134:228-235.

Richards, C.M., Gayle M. Volk, Ann A. Reilley, Adam D. Henk, Dale Lockwood, Patrick A. Reeves, and Philip L. Forsline. 2009. Genetic diversity and population structure in Malus sieversii, a wild progenitor species of domesticated apple. Tree Genetics and Genomics 3:339-347.

Rupasinghe, H.P.V, G.M. Huber, C. Embree, and P.L. Forsline. 2008. Red-fleshed apples as a source for functional beverages. Canadian Institute of Food Science and Technology Conference. May 25-27, 2008.

Samuelian, S.K., Baldo, A.M., Pattison, J.A., and Weber, C.A. 2008. Isolation and linkage mapping of NBS-LRR resistance gene analogs in red raspberry ( Rubus idaeus L.) and classification among 270 Rosaceae NBS-LRR genes. Tree Genetics & Genomes. Electronic Online First article http://www.springerlink.com/content/n423jnx741586448

Simon, C.J., Y. Wan, H. Schwaninger, G.-Y. Zhong, J.A. Labate, and A.M. Baldo. 2008. Nucleotide polymorphism analysis in Vitis: A broad survey across the grape genus. p. 240 In Final Abstracts Guide, Plant and Animal Genome XVI, San Diego, CA.

Simon, C.J., A.M. Baldo, Y. Wan. 2009. Genetic Sequence Diversity In The Grape Genus (Vitis). Plant & Animal Genome XVII Conference, San Diego, CA.
Sun, Lingxia, . Steve van Nocker, and Philip L. Forsline. 2008. Natural Variation for Fruit Abscission in Apple (Malus). HortScience 43:1271
Sun, Lingxia, Steve van Nocker, and Philip. L. Forsline. 2008. Natural Variation in Fruit Abscission-Related Traits in Apple (Malus). Euphytica. Published on-line in 2008.

Volk Gayle, Christopher M. Richards, Ann A. Reilley, Adam D. Henk, Patrick A. Reeves, Philip L. Forsline, and Herb S. Aldwinckle. 2009. Capturing the diversity of wild Malus orientalis from Georgia, Armenia, Russia and Turkey. Under review.

Volk, Gayle, Christopher M. Richards, Adam D. Henk Patrick, Ann A. Reilley, Diane D. Miller, and Philip L. Forsline. 2009. Novel diversity identified in a wild apple population from the Kyrgyzstan. HortScience 44:516-518.

Volk Gayle, Christopher M. Richards, Ann A. Reilley, Adam D. Henk, Patrick A. Reeves, Philip L. Forsline, and Herb S. Aldwinckle. 2008. Genetic diversity and disease resistance of wild Malus orientalis from Turkey and southern Russia. J. Amer. Soc. Hort. Sci. 133: 383-389

Volk, Gayle M., Christopher M. Richards and Philip L. Forsline. 2009. A comprehensive approach toward conserving Malus germplasm. ISHS symposium on Molecular markers, Corvallis, OR, July 2009.

Volk, G.M., Christopher M. Richards, Philip L. Forsline, and Herb Aldwinckle. 2008. Diversity of wild Malus germplasm available in the USDA-ARS National Plant Germplasm System. HortScience 43: 1136

Volk Gayle, Christopher M. Richards, Philip L. Forsline. 2009. A comprehensive approach toward conserving Malus germplasm. Acta Horticulturae. Under Review

Volk, Gayle M., Christopher M. Richards, Philip L. Forsline, and Herb S. Aldwinckle. 2008. Assessment of the genetic diversity and disease resistance of wild Malus orientalis seedlings from Turkey and Southern Russia. 4th International Rosaceae Genomics Conference

Walters, C., G.M. Volk, P.L. Forsline, and K.L. Koster. 2009. Long-term survival of cryopreserved germplasm: Contributing factors and assessments from 30 year-old experiments. ISHS 1st International Symposium on Cryopreservation in Horticultural Species. Leuven Belgium, April 5-8, 2009.

Walters, Chrsitina, Gayle M. Volk, Leigh E. Towill and Philip L. Forsline. 2009. Survival of cryogenically-stored dormant apple buds: A 20 year assessment. 1st International Symposium on Cryopreservation in Horticultural Species. Leuven Belgium, April 5-8, 2009.

01/24/2011

Baldo, A.M., L.D. Robertson, and J.A. Labate. 2010. Comparing alleles between wild and domesticated tomato, P443. Plant and Animal Genome XVIII, San Diego, CA.

Cadle-Davidson, L., Chicoine, D.R., and Consolie, N.C. 2010. Variation within and between Vitis species for foliar resistance to the powdery mildew pathogen Erysiphe necator. Plant Disease, in press.

Fazio, G., H.S. Aldwinckle, G.M. Volk, C.M. Richards, W. J. Janisiewicz, and P.L. Forsline. 2009. Progress in evaluating Malus sieversii for disease resistance and horticultural traits. Acta Horticulturae 814:59-66.

Jurick II, W.M., R.A. Saftner, W.J. Janisiewicz, I. Vico, P.L. Forsline, and W.S. Conway. 2009. Evaluation of wild apple (Malus sieversii) germplasm from Kazakhstan for resistance to Penicillium expansum and Colletotrichum acuatum. 2009 APS annual meeting

Kopsell, D.A., C.E. Sams, D.E. Deyton, K.R. Abney, D.E. Kopsell, and L. Robertson. 2010. Characterization of Nutritionally Important Carotenoids in Bunching Onion Accessions. HortSci 45:463465.

Labate, J.A., S.M. Sheffer, T. Balch and L.D. Robertson. 2010. Diversity and population structure in a geographical sample of tomato (Solanum lycopersicum L.) accessions. Crop Science (in press).

Labate, J.A., S.M. Sheffer and L.D. Robertson. 2010. Optimized work-flow for assaying tomato fruit quality: Vitamin C, titratable acids, brix and lycopene. Northeastern Branch of Crop, Soil and Agronomy Societies of America 2010 Conference, Ithaca NY.

Labate, J.A., L.D. Robertson, and A.M. Baldo. 2009. Multilocus sequence data reveal extensive departures from equilibrium in domesticated tomato (Solanum lycopersicum L.). Heredity 103:257-267.

Labate, J.A., L.D. Robertson, F. Wu, S.D. Tanksley, and A.M. Baldo. 2009. EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (S. lycopersicum L.). Theor Appl Genet 118:10051014.

Labate, J.A., L.D. Robertson, and A.M. Baldo. 2009. SNP diversity in cultivated tomato. In Final Program, 2009 Tomato Breeders Roundtable, Sacramento, CA.

Myles S, Chia J-M, Hurwitz B, Simon C, Zhong GY, Buckler E, and Ware D. 2010. Rapid Genomic Characterization of the Genus Vitis. PLoS ONE 5: e8219

Richards, C.M., G.M. Volk, P.A. Reeves, A.A. Reilley, A.D. Henk, and P.L. Forsline, and H.S. Aldwinckle. 2009. Selection of stratified core sets representing wild apple (Malus sieversii). J. Amer. Soc. Hort. Sci. 134:228-235.

Richards, C.M., G.M. Volk, A.A. Reilley, A.D. Henk, D. Lockwood, P.A. Reeves, and P.L. Forsline. 2009. Genetic diversity and population structure in Malus sieversii, a wild progenitor species of domesticated apple. Tree Genetics and Genomics 3:339-347.

Robertson, L.D., T. Balch, S.M. Sheffer, and J.A. Labate. 2009. Phenotypic characterization of a diversity panel of tomato. ASA-CSSA-SSSA poster presentation 85-5, Pittsburgh, PA.

Volk G., C.M. Richards, A.A. Reilley, A.D. Henk, P.A. Reeves, P.L. Forsline, and H.S. Aldwinckle. 2009. Capturing the diversity of wild Malus orientalis from Georgia, Armenia, Russia and Turkey. Under review.

Volk, G., C.M. Richards, A.D. Henk Patrick, A.A. Reilley, D.D. Miller, and P.L. Forsline. 2009. Novel diversity identified in a wild apple population from the Kyrgyzstan. HortScience 44:516-518.

Volk, G.M., C.M. Richards and P.L. Forsline. 2009. A comprehensive approach toward conserving Malus germplasm. ISHS symposium on Molecular markers, Corvallis, OR, July 2009.

Volk Gayle, C.M. Richards, and P.L. Forsline. 2009. A comprehensive approach toward conserving Malus germplasm. Acta Horticulturae. Under Review