SAES-422 Multistate Research Activity Accomplishments Report

Status: Approved

Basic Information

Participants

1. Dr. Jennifer Bormann, Kansas State University 2. Kerri Bates, Kansas State University 3. Heather Bradford, Kansas State University 4. Dr. Darrh Bullock, University of Kentucky 5. Dr. Michael Davis, Ohio State University 6. Dr. Mauricio Elzo, University of Florida 7. Dr. Rohan Fernando, Iowa State University 8. Dr. Dorian Garrick, Iowa State University 9. Dr. Kathy Hanford, University of Nebraska 10. Dr. Maynard Hogberg, Iowa State University 11. Lauren Hulsman, Texas A&M University 12. Dr. Lauren Hyde, American Simmental Association 13. Dr. Ikhide Imumorin, Cornell University 14. Dr. Steve Kachman, University of Nebraska 15. Dr. Vinay Katneni, Iowa State University 16. Joy King, University of Georgia 17. Dr. Larry Kuehn, US Meat Animal Research Center 18. Dr. Daniela Lino, University of Georgia 19. Dr. Elisa Marques, GeneSeek 20. Kari Otteman, Kansas State University and American Gelbvieh Association 21. Dr. Mahdi Saatchi, Iowa State University 22. Dr. Wade Shafer, American Simmental Association 23. Dr. Warren Snelling, US Meat Animal Research Center 24. Dr. Matt Spangler, University of Nebraska 25. Dr. Scott Speidel, Colorado State University 26. Dr. Mark Thallman, US Meat Animal Research Center 27. Dr. Bob Weaber, Kansas State University 28. Ziqing Weng, Iowa State University 29. Dr. Ania Wolc, HyLine and Iowa State University 30. Dr. Robert Williams, American International Charolais Association

Brief summary of Minutes of Business Meeting: The 2012 NCERA-225 Implementation and Strategies for National Beef Cattle Genetic Evaluation was held in Des Moines Iowa, October 17-19, 2012. Dr. Dorian Garrick served as chair and Dr. Rohan Fernando served as secretary. Dr. Garrick called the business meeting to order at 8:00 AM. A motion was made and seconded to approve the minutes from the 2011 annual meeting. After a brief discussion on the location of the next annual meeting, it was decided to plan a BIF Genetic Prediction Workshop in November 2013, at Kansas City, and hold the NCERA-225 annual meeting in conjunction with the workshop. Dr. Thallman agreed to laiase with BIF to organize the workshop, while Dr. Bob Weaber volunteered to chair the committee and host the next meeting. Dr. Jennifer Bormann volunteered to serve as secretary. Dr Maynard Hogberg, the administrative adviser, provided an update on the funding situation for research and on the formation of the National Association for the Advancement of Animal Science, an association focused on advocating increased federal investment in animal science research. Activities, Reports and Presentations: 10/17/2012 1. Tour of DuPont Pioneer: Automated Greenhouses, GMT and Transformation labs. 2. Genetic Evaluation at Pioneer. Radu Totir, DuPont Pioneer. 3. Findings from genomic selection in parallel to conventional selection for layers- commercial implementation and the challenges and benefits in the commercial breeding program. Neil OSullivan Hy-Line. 10/18/2012 Station and Breed Association Reports: Colorado State University, Cornell University, Iowa State University, Kansas State University, Ohio State University, Texas A&M University, University of Florida, University of Georgia, University of Kentucky, University of Nebraska, US Meat Animal Research Center, National Beef Cattle Evaluation Consortium, American Angus Association, American Gelbvieh Association, American International Charolais association, American Simmental Association, GeneSeek/Igenity.

Accomplishments

The Annual meeting was held in Des Moines, IA, October 17-19, 2012. Dr. Dorian Garrick served as chair, Dr. Rohan Fernando as secretary, and Dr. Maynard Hogberg as the administrative adviser. There were 30 participants and a total of 25 presentations in addition to 18 station reports. The focus of most presentations was on the use of genomics for genetic improvement of beef cattle. " Members of this committee have contributed to the objectives of NCERA- 225. These include:  Participation in extension and research teams of the USDA funded National Program for Genetic Improvement of Feed Efficiency in Beef Cattle.  Implementing NBCEC genomic predictions in American Hereford Association, American Simmental Association for routine creation of molecular breeding values from 50k SNP panels for all routinely recorded traits in those breed associations.  Research and communication with breed associations on methods to incorporate molecular breeding values in national cattle evaluation.  NBCEC Brown Bagger Series.

Impacts

  1. The annual meeting of this committee has served as a venue for discussion of challenges and possible solutions for application of genomics in beef cattle genetic evaluation. Some of the ideas discussed at the annual meeting have been further researched and applied to routine beef cattle genetic evaluations to obtain predictions with accuracies enhanced by genomic information. " Members of this committee have contributed to extension education through the Brown Bagger Series. " Members of this committee have contributed to graduate education through a USDA funded online graduate education project.

Publications

Blair, E.E., J. Minick Bormann, D.W. Moser, and T.T. Marston. 2012. Relationship between residual feed intake and female reproductive measurements in heifers sired by high- or low-residual feed intake Angus bulls. Professional Animal Scientist, Accepted Oct. 29, 2012. 1 2. Bolívar, D. M., M.A. Elzo, M. F. Cerón, E. J. Ramírez, D. A. Agudelo. 2012. Performance tests for buffaloes (Bubalus bubalis) coming from meat and dual-purpose (meat-milk) preweaning management systems in Colombia. Col. J. Anim. Sci. (In press) 3. Bormann, J.M. 2012. Incorporating group problem solving to improve student learning in an agricultural genetics class. NACTA Journal, 56:57- 59. 4. Chung, H. Y., and M. E. Davis. 2011. Effects of calpain genotypes on meat tenderness and carcass traits of Angus bulls. Mol. Biol. Rep. 38:4575-4581. 5. Chung, H., and M. Davis. 2012. Effects of genetic variants for the calpastatin gene on calpastatin activity and meat tenderness in Hanwoo (Korean cattle). Meat Science 90:711-714. 6. Chung, H., and M. Davis. 2012. PCR-RFLP of the ovine calpastatin gene and its association with growth. Asian Journal of Animal and Veterinary Advances 7:641-652. 7. Davis, M. E., M. P. Wick, and M. G. Maqivar. 2012. Hormonal regulation of feed efficiency. In: Feed Efficiency in the Beef Industry. Edited by R. A. Hill. 328. Hoboken, NJ:Wiley. http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470959525,descCDtableOfContents. html. 8. Douthit, T.L, J.M. Bormann, K.C. Gradert, L.W. Lomas, S.F.DeWitt, and J.M. Kouba. 2012. The impact of endophyte-infected fescue consumption on digital circulation and lameness in the distal thoracic limb of the horse. J. Anim. Sci. 90:3101-3111. 9. Duan, Q., R.G. Tait, M.S. Mayes, D.J. Garrick, Q. Liu, A.L. Van Eenennaam, R.G. Mateescu, D.L. Van Overbeke, A.J. Garmyn, D.C. Beitz, and J.M. Reecy. 2012. Genetic polymorphisms in bovine transferrin receptor 2 (TFR2) and solute carrier family 40 (iron-regulated transporter) member 1 (SLC40A1) gene and their associations with beef iron content. Animal Genetics. Doi:10.1111/j.1365-2052.2011.02224.x 10. Elzo, M. A., G. Hu, C. A. Martínez, G. C. Lamb, D. D. Johnson, M. G. Thomas, I. Misztal, D. O. Rae, J. G. Wasdin, and J. D. Driver. 2012. Genomic-polygenic evaluation of Angus-Brahman cattle for carcass traits with the Illumina3K chip. J. Anim. Sci. 90 (E-Suppl. 3):523. 11. Elzo, M. A., D. D. Johnson, J. G.Wasdin, and J. D. Driver. 2012. Carcass and meat palatability breed differences and heterosis effects in an Angus- Brahman multibreed population. Meat Sci. 90: 87-92. 2 12. Elzo, M. A., G. C. Lamb, D. D. Johnson, M. G. Thomas, I. Misztal, D. O. Rae, C. A. Martinez, J. G. Wasdin, and J. D. Driver. 2012. Genomicpolygenic evaluation of Angus-Brahman multibreed cattle for feed efficiency and postweaning growth using the Illumina3k chip. J. Anim. Sci. 90:2488-2497. 13. Elzo, M. A., C. A. Martínez, G. C. Lamb, D. D. Johnson, M. G. Thomas, I. Misztal, D. O. Rae, J. G. Wasdin, and J. D. Driver. 2012. Genomicpolygenic evaluation of postweaning weight and ultrasound carcass traits in an Angus-Brahman multibreed population. J. Anim. Sci. 90 (E-Suppl. 3):522-523. 14. Elzo, M. A. and O. Vergara, Eds. 2012. Statistical modeling applied to animal sciences: II. Genetic Evaluations. Editorial Biogenesis, Medellin, Colombia. http://editorialbiogenesis.udea.edu.co/index.php/biogenesis /article/viewFile/194/199. 15. Garrick, D. J. 2011. The nature, scope and impact of genomic prediction in beef cattle. Invited Review. Genetics Selection Evolution 43:17. 16. Garrick, D.J., L.H. Baumgard, and H.L. Neibergs. 2012. Genomic analysis of data from physiological studies. Invited review. Journal of Dairy Science, 95:499-507. 17. Garrick, D.J., and M. Saatchi. 2011. Opportunities and challenges for genomic selection of beef cattle. Revista Brasileira de Zootecnia, v.40, (Special Supplement) p.310-316. 18. Gebreyohannes, G., S. Koonawootrittriron, M. A. Elzo and T. Suwanasopee. 2012. Fitness of lactation curve functions to daily and monthly test-day milk data in an Ethiopian dairy cattle population. J. Anim. Sci. 90 (E-Suppl. 3):302. 19. Gebreyohannes, G., S. Koonawootrittriron, M. A. Elzo and T. Suwanasopee. 2012. Impact of crossbreeding on production and reproduction traits in an Ethiopian dairy cattle population. 15th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies, Bangkok, Thailand, November 26-30, 2012. 20. Habier, D., R. L. Fernando, K. Kizilkaya, and D. J. Garrick. 2011. Extension of the Bayesian Alphabet for Genomic Selection. BMC Bioinformatics 12:186. 21. Hafla, A. N., P. A. Lancaster, G. E. Carstens, D. W. Forrest, J. T. Fox, T. D. A. Forbes, M. E. Davis, R. D. Randel, and J. W. Holloway. 2012. Relationships between feed efficiency, scrotal circumference, and semenquality traits in yearling bulls. J. Anim. Sci. doi:10.2527/jas.2011-4029. 3 22. Howard, J. T., M.K. Nielsen, T. Mader, and M.L. Spangler. 2012 . The effect of myostatin genotype on body temperature during extreme temperature events. J. Anim. Sci. 86: E supple. 3. 23. Huang, H, H. C. Hines, K. M. Irvin, K. Lee, and M. E. Davis. 2011. Response to divergent selection for insulin-like growth factor-I concentration and correlated responses in growth traits in Angus cattle. J. Anim. Sci. 89:3924-3934. 24. Hyde, L.R. 2011. Understanding DNA-enhanced EPDs. SimTalk 19(4):18- 19. 25. Hyde, L.R. 2011. Understanding DNA-enhanced EPDs: Part II. SimTalk 19(5):8. 26. Hyde, L.R. 2012. Docility of Brahman-based cattle. SimTalk 20(4):24. 27. Hyde, L.R. and W.R. Shafer. 2012. Multibreed genetic evaluation for calving ease and maternal calving ease. SimTalk 20(1):22-23. 28. Hyde, L.R. and W.R. Shafer. 2012. Multibreed genetic evaluation for calving ease and maternal calving ease. The Register 25(6):16-17. 29. Jattawa, D., S. Koonawootrittriron, M. A. Elzo, and T. Suwanasopee. 2012. Somatic Cells Count and Its Genetic Association with Milk Yield in Dairy Cattle Raised under Thai Tropical Environmental Conditions. Asian-Aust. J. Anim. Sci. 25:1216-1222. 30. Koonawootrittriron, S., M. Elzo, T. Suwanasopee, C. Chaimongkol, T. Sainui, T. Tongprapi, and T. Ralukmun. 2012. D.P.O. Sire & Dam Summary 2011. Dairy Farming Promotion Organization, Ministry of Agriculture and Cooperatives of Thailand, Bangkok. p 1-56. 31. Koonawootrittriron, S., M. A. Elzo, S. Yeamkong, and T. Suwanasopee. 2012. A Comparative Study on Dairy Production and Revenue of the Dairy Farms Supported by a Private Organization with those Supported by a Dairy Cooperative in Central Thailand. Livest. Res. Rural Dev. 24 (4), Article #61. 32. Koonawootrittriron, S., U. Nopibool, M. A. Elzo and T. Suwanasopee. 2012. Length of productive life and lifetime production of Landrace, Yorkshire and crossbred sows raised under Thai tropical conditions. J. Anim. Sci. 90 (E-Suppl. 3):640. 33. Koonawootrittriron, S., P. Yodklaew, M. A. Elzo and T. Suwanasopee. 2012. Association between milk production and Holstein fraction of upgraded dairy cattle in the Thai tropics. J. Anim. Sci. 90 (E-Suppl. 3):266. 4 34. Kurdistani, Z. K., J. Rostamzadeh, A. Rashidi, and M. E. Davis. 2012. Evaluation of insulin-like growth factor-I gene polymorphism on growth traits and yearling fleece weight in goats. Small Ruminant Res. http://dx.doi.org/10.1016/j.smallrumres.2012.08.003. 35. Martínez, C. A., M. A. Elzo, C. Manrique, L. F. Grajales, and A. Jimenez. 2012. Random regression models for estimation of covariance functions, genetic parameters and prediction of breeding values for rib eye area in a Colombian Bos indicus-Bos taurus multibreed cattle population. Col. J. Stat. 35 (Special Issue, 2): 309-322. 36. Martínez, C.A., M. A. Elzo, A. Jimenez, C. Manrique1 and G. Hu. 2012. Covariance functions, genetic parameters and breeding values for longitudinal ultrasound measures of ribeye area in a Colombian multibreed cattle population. J. Anim. Sci. 90 (E-Suppl. 3):267. 37. Martínez, C. A., M. A. Elzo, C. Manrique, and A. Jimenez. 2012. Covariance components, genetic parameters and breeding values for live weight using random regression models in a Bos taurus-Bos indicus multibreed cattle population in Colombia. Col. J. Anim. Sci. (In press) 38. Martínez, C. A., C. Manrique, M. A. Elzo, and A. Jimenez. 2012. Additive genetic group and heterosis effects on growth traits and corporal composition measurements via ultrasound in crossbred animals in Southern Cesar, Colombia. Col. J. Anim. Sci. 25:377-390. Martínez, C. A. *, C. 39. Mateescu, R.G., A.J. Garmyn, M.A. ONeil, R.G. Tait, A. Abuzaid, M.S. Mayes, D.J. Garrick, A.L. Van Eenennaam, D.L. VanOverbeke, G.G. Hilton, D.C. Beitz, and J.M Reecy. 2012. Genetic parameters for carnitine, creatine, creatinine, carnosine, and anserine concentration in longissimus muscle and their associations with palatability traits in Angus cattle. Journal of Animal Science, doi:10.2527/jas.2011-5077. 40. Mateescu, R.G., A.J. Garmyn, R.G. Tait, Q. Duan, Q. Liu, M.S. Mayes, D.J. Garrick, A.L. Van Eenennaam, D.L. VanOverbeke, G.G. Hilton, D.C. Beitz, and J.M Reecy. 2012. Genetic parameters for concentrations of minerals in longissimus muscle and their associations with palatability traits in Angus cattle. Journal of Animal Science, doi:10.2527/jas.2012- 5744. 41. Manrique, M. A. Elzo, and A. Jimenez. 2012. Cattle genetic evaluation: A historical perception. Col. J. Anim. Sci. 25:293-311. 42. Pascoa, L., A. de los Reyes, M. A. Elzo, J. L. Ferreira, L. A. F. Bezerra, and R. B. Lobo. 2011. Relative contribution of effects included in contemporary groups for adjusted and actual 120-d and 210-d weights in Nellore cattle in Brazil. Genetics and Molecular Biology 34:569-574. 5 43. Peters, S.O., K. Kizilkaya, D.J. Garrick, R.L. Fernando, J.M. Reecy, R.L. Weaber, G.A. Silver, and M.G. Thomas. 2012. Bayesian genome-wide association analyses of growth and yearling ultrasound measures of carcass traits in Brangus heifers. Journal of Animal Science, doi:10.2527/jas.2011- 4507. 44. Peters, S.O., K. Kizilkaya, D.J. Garrick, R.L. Fernando, J.M. Reecy, R.L. Weaber, G.A. Silver, and M.G. Thomas. 2012. Heritability and Bayesian genome-wide association study of first service conception and pregnancy in Brangus heifers. Journal of Animal Science, doi:10.2527/jas.2012-5580. 45. Ramírez-Díaz, J., T. A. Oliveira, A. Zampar, S. F. N. Pertile, M. A. Elzo, J. B. S. Ferraz, G. B. Mourao. 2012. Genetic parameters for carcass traits and weaning weight of composite beef cattle in Brazil. J. Anim. Sci. 90 (E-Suppl. 3):270. 46. Saatchi, M., R.D. Schnabel, M.M. Rolf, J.F. Taylor, and D.J. Garrick. 2012. Accuracy of direct genomic breeding values for nationally evaluated traits in US Limousin and Simmental beef cattle. Genetics Selection Evolution, 44:38. 47. Sun X, Qu L, Garrick DJ, Dekkers JCM, Fernando RL (2012) A Fast EM Algorithm for BayesA-Like Prediction of Genomic Breeding Values. PLoS ONE 7(11): e49157. doi:10.1371/journal.pone.0049157 48. Toledo, H. O., J. M. Berruecos, C. G. Vazquez, F. J. Ruiz, and M. A. Elzo. 2012. Genetic parameters for milk production in two Holstein cattle populations in Mexico. 48th National Livestock Research Meetings, Queretaro, Mexico, September 10-13, 2012. 49. Weber, K.L., D.J. Drake, J.F. Taylor, D.J. Garrick, L.A. Kuehn, R.M. Thallman, R.D. Schnabel, W.M. Snelling, E.J. Pollak, and A.L. Van Eenennaam. 2012. The accuracies of DNA-based estimates of genetic merit derived from Angus- or multi-breed beef cattle training populations. Journal of Animal Science doi:10.2527/jas.2011-5020 6
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