SAES-422 Multistate Research Activity Accomplishments Report
Sections
Status: Approved
Basic Information
- Project No. and Title: S297 : Soil Microbial Taxonomic and Functional Diversity as Affected by Land Use and Management
- Period Covered: 10/01/2001 to 09/01/2002
- Date of Report: 08/15/2002
- Annual Meeting Dates: 06/12/2002 to 06/14/2002
Participants
Albrecht, Steve (Stephan.Albrecht@orst.edu)- USDA-ARS, Oregon, chair; Angle, Scott (ja35@UMAIL.UMD.EDU) - University of Maryland; Bryant, Tamara (TAMBOKITTY@aol.com) - University of New Hampshire, guest; Deng, Shiping (deng@mail.pss.okstate.edu) - Oklahoma State University; Entry, Jim (JEntry@KIMBERLY.ARS.PN.USBR.GOV) - USDA-ARS, Idaho; Godfrey Dominique (epidemic0072001@yahoo.com) - University of Georgia, guest; Hagedorn, Charles (Chuck) (chagedor@vt.edu) - Virginia Tech; Hartel, Peter (pghartel@imap.arches.uga.edu) - University of Georgia; Jubb, Gerald (Skip) (jubbg@vt.edu) - Virginia Tech/Virginia Ag Experiment Station, acting Administrative Advisor; Hickey, William (wjhickey@facstaff.wisc.edu) - University of Wisconsin; Jenkins, Michael (mjenkins@imap.arches.uga.edu) - USDA-ARS, Georgia; Kuntz, Robin (rlkuntz@arches.uga.edu) - University of Georgia, guest; Nakatsu, Cindy (cnakatsu@purdue.edu) - Purdue University; Reilly, John (jpr11@cornell.edu) - Cornell University, guest; Savin, Mary (msavin@uark.edu) - University of Arkansas; Sylvia, David (DMSylvia@MAIL.IFAS.UFL.EDU) - University of Florida; Thies, Janice (jet25@cornell.edu) - Cornell University, secretary and host; Wang, Ping (wang.566@osu.edu) - Ohio State University, guest; Zuberer, David (dzuberer@taexgw.tamu.edu) - Texas A&M University
Steve Albrecht, 2002 Chair, welcomed all participants to the meeting and brought the meeting to order.
Janice Thies, local organizer, presented the agenda and explained the local arrangements.
Administrative Report - Gerald (Skip) Jubb
Skip Jubb presented the Administrative Report. Unfortunately, Kriton was unable to join us due to a recent illness. As funding is getting tighter all the time, Skip advised us to emphasize high project quality and tangible outcomes. We are to work only on our defined objectives and to stay focused. Our annual report must be posted within 60 days of this meeting on the new National Information Management Support System (NIMSS). Format of final report is responsibility of the Chair (Steve Albrecht). David Sylvia manages the web page and Mike Mullen hosts the listserv for email.
Questions/Discussion:
It was apparent to all participants that funding for travel to the Annual Meeting is not managed equitably between institutions. The formula, however, is set by the states; therefore there is no way to ‘normalize‘ it.
The group acknowledged with sadness the passing of Bob Klucas, who joined the group in the early 1980s and contributed to it for over 20 years.
The remainder of the day was given over to group reports from all three objectives.
Peter Hartel - Obj #1
Peter provided an update of the work in Georgia on bacterial source tracking. Key points were:
1. The Hartel group has a laser focus on Obj #1 and has been very successful in obtaining extramural funding.
2. GA/ID collaborative E. coli work will appear in the Jour. of Environmental Quality.
3. Microbial source tracking -focus has been on E. coli, however, enormous total diversity and temporal variability is forcing them to look for another indicator - E. faecalis is looking promising as it is essentially only found in humans, wild birds and poultry.
Dominique Godfrey - Obj #1
Dominique presented a detailed report of this year‘s outcomes by the Georgia group. The primary data are contained in their Annual Report. Two key points were:
1. The greatest weakness for microbial source tracking is SAMPLING. The Georgia group is now undertaking intense targeted sampling. E. faecalis is the focus organism.
2. The fly in the ointment is that the fundamental premise for the use of indicator organisms is that they do not persist in the environment. This is likely not true for E. coli.
Questions and discussion for ALL reports are given in detail in the Meeting Minutes located on the S-297 website.
BREAK - Discussion on European Collaboration
The group was in favor of increasing collaboration overseas and developing new links. It was suggested that the Annual Meeting might be held in Europe in 2 years to facilitate integration and collaboration with European colleagues.
Jim Entry - Obj #1
Jim reported on his collaborative work with Peter Hartel on tracking E. coli in the Rock Creek catchment in ID. Limited data are available, however, contamination appears of human origin, not cattle. They will now apply intense targeted sampling. Jim has 3 years funding to do this. He will be sending the ID samples to the riboprinter in GA.
Chuck Hagedorn- Obj #1
Chuck reported on their work in the Chesapeake Bay. Antibiotic resistance, Biolog and PFGE are being used as tracking tools. They have found that some species of Enterococcus are related to certain hosts and not others and that the use of phenotypic markers only yields broad categories. They have been doing monthly sampling of E. coli and Enterococcus for one year, and have picked up several storm events. A human signature is seen during the wet season. Their aim is to contribute to TMDLs. To date, only 1/3 of state‘s waters have been evaluated. Chuck presented a poster at ASM and has a paper coming out in JEQ shortly on this work.
Scott Angle - Obj #2
Scott spent 5 mos. at Univ. of Melbourne with Alan Baker. He taught a joint class (MD and Aus) on phytoremediation, which was recorded on a CD. Scott is studying rhizosphere ecology of hyperaccumulators and looking for potential inoculant organisms. Different plants are being examined. He has isolated 250 bacteria - mostly pseudomonads, and has found 4 that increased uptake of Ni considerably. One that increases uptake by over 30%. Scott also reported on his work in constructed Rain Guard systems in which plant heavy metal hyperaccumulators are planted to take up Zn from tires. Anaerobic denitrification, C decomposition and decreased erosion are other benefits of the Rain Guards.
Cindy Nakatsu - Obj #2
At Pudue, remediation work is focusing on site assessment. Real-time PCR is being used to target aerobic oxygenase genes. A remediation method is put in place and then evaluated for increasing degradation. They are following gene copy number to see if it increases over time. They are also monitoring wells. This work is soon to be published.
David Zuberer - Obj #2
David reported on their work on water-soluble C in turf grass (urban Agriculture), where they are particularly interested in C dynamics and bioclogging in sand-based root zones. Although the greens‘ design is aeration and drainage friendly, they find a black zone developing after a few years. ‘Snake oil‘ products, that are being sold to greens-keepers as cure-alls, were discussed extensively.
Janice Thies - Obj #1 and #3
Cornell University hosted a workshop to train S-297 participants in the denaturing gradient gel electrophoresis (DGGE) and terminal restriction fragment length polymorphism (TRFLP) analyses for soil microbial community analysis 6/8-11/02.
Cornell report - Federal Formula Funds funding has been obtained to begin collaborative work in Obj #1 with Hartel/Hagedorn/Emerson et al., beginning 10/1/02.
Bill Hickey - Obj #2
Bill reported on his work in characterizing PAH degrading bacteria isolated from humic acid (HA) solutions. He is studying the bioavailability of phenanthrene, which is sorbed by OM and has a low aqueous solubility. The hypothesis being tested is that enrichment systems with sorbed PAH may yield organisms relevant to biodegradation in soil. REP PCR fingerprints and 16S sequence analysis are being used to characterize PAH degraders. Mechanisms of degradation are also being studied.
David Sylvia - Obj #3
Dave reported on studies in dune stabilization. They have examined compatible plant/mycorrhizal fungus ecotype combinations from micro-propagated sea oats planted on FL beaches. Fungal diversity is being characterized by large subunit rRNA gene amplification and sequencing at four geographically diverse sites. They have found:
1. as much intra-site variability as inter-site variability.
2. a range of symbiotic effectiveness within the beach dune system, which affords the opportunity for selection of superior AM fungal-host combinations.
3. the origin of host and AM fungi has little predictive value in screening these combinations.
Shiping Deng - Obj #2
Shiping is studying nitroaromatic contamination and associated degrading bacteria in TNT contaminated soils. She has been conducting bioreactor studies with engineers. TNT-RDX-HMX - remediation sometimes works, sometimes not. The impact of contamination on soil N pools and the microbial community are being investigated. Microbial biomass, enzyme activity and total recoverable bacteria are all seriously affected in contaminated soils. Controlled studies are also in progress in which TNT has been added to healthy soils and the community response measured. DGGE and 16S sequencing of isolates are being conducted.
Textbook Committee - David Sylvia
Principles and Application of Soil Microbiology - 2nd Edition. David reviewed for us the proposed chapters and authors. These can be found on the S-297 website.
Steve Albrecht -
Steve is studying organic matter (OM) dynamics in varying tillage systems in Eastern OR, where low soil OM is the primary problem. They have found that:
1. Tillage that returns residue and low-till practices increase soil OM.
2. Light fraction (sodium iodide or sodium tungstate) centrifugation is correlated with reduced tillage operations.
Steve has also been working on:
1. building a model for C sequestration,
2. examining microbial diversity in different tillage operations, and
3. N mineralization studies post manure application in sandy soils in areas new to cattle production.
Ping Wang-
Ping reported on tillage trials in OH (long term no-till for 45 y). TRFLP is being used to compare community structure between tillage treatments. They are also monitoring animal pathogens by examining leachate for E. coli O157:H7 and Cryptosporidium. NOTE: Warren Dick - message delivered by Ping Wang. Warren would be glad to develop a proposal or cooperate with like-minded researchers. His projects can be linked into all 3 objectives.
Chuck Hagedorn-
Announced the newsletter devoted to bacterial source tracking "Environmental Detection News." Copies of the first issue were distributed. The newsletter is meant to be a more informal information-sharing medium.
Textbook discussion
David Sylvia reported that they expect to have the new edition on the shelf for Fall 2003. It should be to Prentice Hall by end of this year. The Laboratory manual is also in the works. Prentice Hall will not be the publisher. Dave requested sharing of exercises in our courses that might be useful, including molecular exercises. The 2nd edition of the textbook will be dedicated to the memory of Bob Klucas.
Election of officers and selection of next year‘s meeting site
Janice Thies is the chair for 2002-03. The chair-elect position was open for election. There were two self-nominations: Jim Entry and Mary Savin. These nominations were both seconded by Cindy Nakatsu. The vote was taken by a show of hands. Mary Savin was elected by a vote of 10 to 0.
Next year‘s meeting site:
Next year‘s meeting will be held in Puerto Rico, June 2-4, 2003. Eduardo Schroeder will be the local host in concert with Peter Hartel. Other members of the planning committee are: Jim Entry and Robin Kuntz.
Discussion on future collaborative grants - whole group
The following ideas and funding sources were discussed:
Bacterial source tracking:
1. National Park Service, Yellowstone, is interested.
2. Coastal Zone management, the Sea Grant Program , 319 Funds and EPA.
Biosafety issues:
1. The Military (DOD) - Camps need baselines established.
2. The STAR program
3. Local/State Water Quality initiatives.
Other funding sources: NSF - Microbial Observatories Program.
We all wish Kriton the very best. On behalf of group we wish him a speedy recovery.
Where does S-297 stand in the Multistate program?
We would appreciate if the station directors were to provide feedback of a substantive nature. We would also deeply appreciate some encouragement and support for the work we are doing - if they think our research is worthy of it. Administratively, how do we remove participants that are no longer active? Peter Hartel proposed that if no progress report has been received in the last 2 years, which is current project‘s duration, then remove the participant from the list. In order to stay on, they must submit a progress report within the next 30 days. Steve Albrecht will communicate this in conjunction to soliciting input to the annual report. He will also contact Skip Jubb to clarify the membership list of record and email the current list to all participants.
The chair, Steve Albrecht, thanked our host, Janice Thies, for making the arrangements for this year‘s meeting.
Move to adjourn: J. Thies
Second: D. Zuberer
Meeting was adjourned at 12:01 pm